snakemake

snakemake

Snakemake: Create one target output before moving on to the next in a forked workflow

Snakemake copy one file to multiple files

snakemake - Missing input files for rule all

Does snakemake support none file Input?

Snakemake: use checksums instead of timestamps?

how to solve snakemake 5.32.0 env problem

using snakemake.utils in profile without using conda-not-block-search-path-envvars

request for clarification in snakemake's documentation regarding 'resources' and 'threads'

snakemake - configure rules to run with local container (Singularity, Docker)

Snakemake: access a list within a dict by using a wildcard

How to read the config.yaml file and feed it in snakemake

strange Gurobi error when running Snakemake

Snakemake hangs after DAG is completed for a large workflow

Accessing the attempt counter for change in job behaviour

Snakemake: Error when trying to run a rule for multiple directories and files

Snakemake 200000 job submission

Snakemake: output file name seems to require a static path portion

Catching snakemake runtime errors with onerror

How does snakemake --show-failed-logs works

"Input files updated by another job" but not true

Snakemake exit a rule during execution

Running multiple snakemake rules

Create index of a reference genome with bwa and gatk using snakemake touch

Eliminating snakemake temporary directories

Example of writing shadow rules using Snakemake

Overwrite nested config options on command line

Snakemake: Combine different rules for all files in a certain directory

Accessing file path from a config.yaml in Snakemake

NameError when ues awk in snakemake

How to choose the second wildcard for a rule depending on the first?

Snakemake perform rules based on configs

Snakemake decide which rules to execute during execution

How to use snakemake.script in wrappers?

Snakemake cannot handle very long command line?

CalledProcessError in Snakemake

Input vs Output: Job completed successfully, but some output files are missing

Snakemake: MissingInputException with inconsistent naming scheme

My workflow ignores the path decided via Inputfunction

Use snakemake's localrules in wildcard specific manner

snakemake "--max-jobs-per-second" argument doesn't work

Snakemake: parameterized runs that re-use intermediate output files

A number of Trimmomatic trimming parameters not working in Snakemake wrapper

combine to outputs of diffrent rules in Snakemake

passing parameters to cwl from snakemake

How do I make snakemake rebuild missing inputs?

Can I stop a rule in snakefile being parallel executed

Using checkpoints with snakemake gives each instance of a rule all input files

Snakemake : Can I access wildcards outside of rules?

Snakemake using the same input and output in a rule

Snakemake, RNA-seq : How can I execute one subpart of a pipeline or another subpart based on the characteristics of the sample that is analysed?

ChildIOException when creating a subdirectory of a subdirectory

Using directory as input in snakemake for particulars scripts

Snakemake tries to run rule, reason: Missing output files, but files are temporary

Can both shell: and run: be used in a single rule?

Snakemake: --use-conda with --cluster

chain/dependency of some rules by wildcards

Is it possible to dynamically add rules to 'localrules:'? [duplicate]

What are the conditions for snakemake to execute a job?

minimal requirements for specifying file paths in a cloud bucket

Specify input and output files in Snakefile

page:3 of 7 prev page next page main page

Categories

azure-powershell

fluent-assertions

spring-data-rest

instrumentation

react-google-charts

jmsserializerbundle

sql-to-linq-conversion

amazon-elasticache

grunt-contrib-uglify

apache-spark-ml

key-formal-verification

apache-commons-email

fullcalendar-scheduler

angular4-router

php-java-bridge

configuration-management

knockout-components

concept-insights

drupal-commerce

code-access-security

Resources