TL;DR: can anyone help w/ geospatial things in R using geom_raster() in ggplot?
Basically it seems that my issue is stemming from the fact that I don't have perfectly gridded values (aka I get this message: "Warning: Raster pixels are placed at uneven vertical/horizontal intervals and will be shifted. Consider using geom_tile() instead."). So, if I switch to geom_tile, then I can control the size of the tiles, but then they look chunky and awful since there's no interpolation feature in geom_tile. If I use geom_raster, I think it gets confused what size it should plot the pixels since it's not perfectly gridded, so when I facet my ggplot, the output sometimes will have teeny tiny dots (or even no dots at all) on some facets, and pretty maps on the other facets. When I round the lat/lon coordinates to 0 decimal places, this fixes the teeny tiny / no dots problem, but then ends up with things just like geom_tile (chunky with no blending between).Any ideas on how to fix this? I think if there's a way to manually interpolate to fill in NA values so that I do have nice symmetrically-gridded data, then geom_raster should work fine. Like what needs to happen is for each situation where we're missing a value at a certain lat/lon, we need to take the mean value between the two closest neighboring points to fill in that missing lat/lon point on the grid. But I'm not sure how to do this (aka how to convert from my dataframe into all the different spatial classes and back again). Then again, this manual approach might be overcomplicating things and I'd love a simpler solution. (fingers crossed)
I'm building this in a shiny app with crazy long code, and a very large dataset, but happy to share additional info as needed!
example plot
example plot2
warning example
Related
I have SVG abirtrary paths which i need to pack as efficiently as possible within a given rectangle(as less waste of space as possible). After some research i found the bin packing algorithms which seems to be dealing with boxes and not curved random shapes(my SVG shapes are quite complex and include beziers etc.).
AFAIK, there is no deterministic algorithm for actually packing abstract shapes.
I wish to be proven wrong here which would be ideal(having a mathematical deterministic method for packing them). In case I am right however and there is not, what would be the best approach to this problem
The subject name is Shape Nesting, Nesting Problem or Nesting Process.
In Shape Nesting there is no single/uniform algorithm or mathematical method for nesting shapes and getting the least space waste possible.
The 1st method is the packing algorithm(creates an imaginary bounding
box for each shape and uses a rectangular 2D algorithm to pack the
bounding boxes).
This method is fast but the least efficient in regards to space
waste.
The 2nd method is some kind of incremental rotation. The algorithm
rotates the shape at incremental steps and checks if it fits in the
space. This is better than the packing method in regards to space
waste but it is painstakingly slow,
What are some other classroom examples for achieving a solution to this problem?
[Edit1] new answer
as mentioned before bin-packing is NP complete (hard) so forget about algebraic solution
known approaches are:
generate and test
either you test all possibility of the problem and remember the best solution or incrementally add items (not all at once) one by one with the same way. It is basically what you are doing now without proper heuristic is unusably slow. But has the best space efficiency (the first one is much better but much slower) O(N!)
take advantage of sorting items by size
something like this it is much faster almost O(N.log(N)) (according to used sorting algorithm). Space efficiency strongly depends on the items size range and count. For rectangular shapes is this the best approach (fastest and usable even for N>1000). For complex shapes is this not a good way but look at it anyway maybe you get some idea ...
use of Neural network
This is extremly vague approach without any warrant of solution but possible best space efficiency/runtime ratio
I think there could be some field approach out there
I sow a few for generating graph layouts. All items create fields (booth attractive and repulsive) so they are moving to semi-stable state.
At first all items are at random locations
When the movement stop remember best solution and shake all items a little or randomize their position again.
Cycle this few times
This approach is much faster then genere and test and can provide very close solution to it but it can hang in local min/max or oscillate if the fields are not optimally choosed. For example all items can have constant attractive force to each other and repulsive force getting stronger only when the items are very close. You have to prevent overlapping of items (either by stronger repulsion or by collision tests). You have also to create some rotation moment for example with that repulsive force. It differs on any vertex so it creates a rotation moment (that can automatically align similar sides closer together). Also you can have semi-stable state with big distances between items and after finding best solution just turn off repulsion fields so they stick together. Sometimes it can have better results some times not ... here is nice example for graph layout computation
Logic to strategically place items in a container with minimum overlapping connections
Demo from the same QA
And here solver for placing sliders in 2D:
How to implement a constraint solver for 2-D geometry?
[Edit0] old answer before reformulating the question
I am not clear what you want to achieve.
have SVG picture and want to separate its parts to rectangular regions
as filled as can be
least empty space in them
no shape change in picture
have svg picture and want to change its shapes according to some purpose
if this is the case some additional info is needed
[solution for 1]
create a list of points for whole SVG in global SVG space (all points are transformed)
for line you need add 2 points
for rectangles 4 points
circle/elipse/bezier/eliptic arc 8 points
find local centres of mass
use classical approach
or can speed things up by computing the average density of points per x,y axis separately and after that just check all combinations of found positions of local max of densities if they really are sub cluster center or not.
all sub cluster center is the center of your region
now find the most far points which are still part of your cluster (the are close enough to neighbour points)
create rectangular area that cover all points from sub cluster.
you also can remove all used points from list
repeat fro all valid sub clusters
until all points are used
another not precise but simpler approach is:
find SVG size
create planar map of svg with some precision for example int map[256][256].
size of map can be constant or with the same aspect as SVG
clear map with 0
for any point of SVG set related map point to 1 (or inc or whatever)
now just segmentate map and you will have find your objects
after segmentation you have position and size of all objects
so finding of bounding boxes should be easy
You can start with a variant of the rectangle bin-packing algorithm and add rotation. There is a method "Guillotine bin packer" and you can download a paper and a library at github.
Currently I'm working on a little project just for a bit of fun. It is a C++, WinAPI application using OpenGL.
I hope it will turn into a RTS Game played on a hexagon grid and when I get the basic game engine done, I have plans to expand it further.
At the moment my application consists of a VBO that holds vertex and heightmap information. The heightmap is generated using a midpoint displacement algorithm (diamond-square).
In order to implement a hexagon grid I went with the idea explained here. It shifts down odd rows of a normal grid to allow relatively easy rendering of hexagons without too many further complications (I hope).
After a few days it is beginning to come together and I've added mouse picking, which is implemented by rendering each hex in the grid in a unique colour, and then sampling a given mouse position within this FBO to identify the ID of the selected cell (visible in the top right of the screenshot below).
In the next stage of my project I would like to look at generating more 'playable' terrains. To me this means that the shape of each hexagon should be more regular than those seen in the image above.
So finally coming to my point, is there:
A way of smoothing or adjusting the vertices in my current method
that would bring all point of a hexagon onto one plane (coplanar).
EDIT:
For anyone looking for information on how to make points coplanar here is a great explination.
A better approach to procedural terrain generation that would allow
for better control of this sort of thing.
A way to represent my vertex information in a different way that allows for this.
To be clear, I am not trying to achieve a flat hex grid with raised edges or platforms (as seen below).
)
I would like all the geometry to join and lead into the next bit.
I'm hope to achieve something similar to what I have now (relatively nice undulating hills & terrain) but with more controllable plateaus. This gives me the flexibility of cording off areas (unplayable tiles) later on, where I can add higher detail meshes if needed.
Any feedback is welcome, I'm using this as a learning exercise so please - all comments welcome!
It depends on what you actually want and what you mean by "more controlled".
Do you want to be able to say "there will be a mountain on coordinates [11, -127] with radius 20"? Complexity of this this depends on how far you want to go. If you want just mountains, then radial gradients are enough (just add the gradient values to the noise values). But if you want some more complex shapes, you are in for a treat.
I explore this idea to great depth in my project (please consider that the published version is just a prototype, which is currently undergoing major redesign, it is completely usable a map generator though).
Another way is to make the generation much more procedural - you just specify a sequence of mathematical functions, which you apply on the terrain. Even a simple value transformation can get you very far.
All of these methods should work just fine for hex grid. If artefacts occur because of the odd-row shift, then you could interpolate the odd rows instead (just calculate the height value for the vertex from the two vertices between which it is located with simple linear interpolation formula).
Consider a function, which maps the purple line into the blue curve - it emphasizes lower located heights as well as very high located heights, but makes the transition between them steeper (this example is just a cosine function, making the curve less smooth would make the transformation more prominent).
You could also only use bottom half of the curve, making peaks sharper and lower located areas flatter (thus more playable).
"sharpness" of the curve can be easily modulated with power (making the effect much more dramatic) or square root (decreasing the effect).
Implementation of this is actually extremely simple (especially if you use the cosine function) - just apply the function on each pixel in the map. If the function isn't so mathematically trivial, lookup tables work just fine (with cubic interpolation between the table values, linear interpolation creates artefacts).
Several more simple methods of "gamification" of random noise terrain can be found in this paper: "Realtime Synthesis of Eroded Fractal Terrain for Use in Computer Games".
Good luck with your project
Im trying to transform a path along an arc.
My project is running on osX 10.8.2 and the painting is done via CoreAnimation in CALayers.
There is a waveform in my project which will be painted by a path. There are about 200 sample points which are mirrored to the bottom side. These are painted 60 times per second and updated to a song postion.
Please ignore the white line, it is just a rotation indicator.
What i am trying to achieve is drawing a waveform along an arc. "Up" should point to the middle. It does not need to go all the way around. The waveform should be painted along the green circle. Please take a look at the sketch provided below.
Im not sure how to achieve this in a performant manner. There are many points per second that need coordinate correction.
I tried coming up with some ideas of my own:
1) There is the possibility to add linear transformations to paths, which, i think, will not help me here. The only thing i can think of is adding a point, rotating the path with a transformation, adding another point, rotating and so on. But this would be very slow i think
2) Drawing the path into an image and bending it would surely lead to image-artifacts.
3) Maybe the best idea would be to precompute sample points on an arc, then save save a vector to the center. Taking the y-coordinates of the waveform, placing them on the sample points and moving them along the vector to the center.
But maybe i am just not seeing some kind of easy solution to this problem. Help is really appreciated and fresh ideas very welcome. Thank you in advance!
IMHO, the most efficient way to go (in terms of CPU usage) would be to use some form of pre-computed approach that would take into account the resolution of the display.
Cleverly precomputed values
I would go for the mathematical transformation (from linear to polar) and combine two facts:
There is no need to perform expansive mathematical computation
There is no need to render two points that are too close from each other
I have no ready-made algorithm for you, but you could use a pre-computed sin or cos table, and match the data range to the display size in order to work with integers.
For instance imagine we have some data ranging from 0 to 1E6 and we need to display the sin value of each point in a 100 pix height rectangle. We can use a pre-computed sin table and work with integers. This way displaying the sin value of a point would be much quicker. This concept can be refined to get a nicer result.
Also, there are some ways to retain only significant points of a curve so that the displayed curve actually looks like the original (see the Ramer–Douglas–Peucker algorithm on wikipedia). But I found it to be inefficient for quickly displaying ever-changing data.
Using multicore rendering
You could compute different areas of the curve using multiple cores (can be tricky)
Or you could use pre-computing using several cores, and one core to do finish the job.
I have a seemingly simple problem, but an easy solution is alluding me. I have a very large series (tens or hundreds of thousands of points), and I just need to visualize it at different zoom levels, but generally zoomed well out. Basically, I want to plot it in a tool like Matlab or Pyplot, but knowing that each pixel can't represent the potentially many hundreds of points that map to it, I'd like to see both the min and the max of all the array entries that map to a pixel, so that I can generally understand what's going on. Is there a simple way of doing this?
Try hexbin. By setting the reduce_C_function I think you can get what you want. Ex:
import matplotlib.pyplot as plt
import numpy as np
plt.hexbin(x,y,C=C, reduce_C_function=np.max) # C = f(x,y)
would give you a hexagonal heatmap where the color in the pixel is the maximum value in the bin.
If you only want to bin in one direction, see this this method.
First option you may want to try is Gephi- https://gephi.org/
Here is another option, though I'm not quite sure it will work. It's hard to say without seeing the data.
Try going to this link- http://bl.ocks.org/3887118. Do you see toward the bottom of the page data.tsv with all of the values? IF you can save your data to resemble this then the HTML code above should be able to build your data in the scatter plot example shown in that link.
Otherwise, try visiting this link to fashion your data to a more appropriate web page.
There are a set of research tools called TimeSearcher 1--3 that provide some examples of how to deal with large time-series datasets. Below are some example images from TimeSearcher 2 and 3.
I realized that simple plot() in MATLAB actually gives me more or less what I want. When zoomed out, it renders all of the datapoints that map to a pixel column as vertical line segments from the minimum to the maximum within the set, so as not to obscure the function's actual behavior. I used area() to increase the contrast.
I'm trying to develop an app which allows you to walk around, and where you walked will be drawn on a map. I have this all working fine, but I'm finding that even with a reasonably accurate GPS location the points still jump around a bit. When drawn on a map this has the effect of creating a squiggly or zig-zag line.
I'm looking for suggestions/strategies on how to smooth the data, so that the line drawn on the map is more of a smooth best fit, rather than an accurate point to point drawing.
There are many different types of smoothing algorithms you could apply to the data (for a few starting points, see this Wikipedia article). The only way to know for sure which is/are suitable for your application is to implement and test them.
Simple or weighted moving averages are fairly common (taking the last n samples and averaging them), but have the problem of lagging behind the data. A common one for filtering signal noise is a high-pass filter, which attenuates small (noisy) movements while passing through larger ones. Apple has some code for this in their AccelerometerGraph sample.
I'd suggest trying those out first as they're easy to implement, before looking at the move complex ones.