work/Versions/3.9/Headers -c src/lxml/etree.c -o build/temp.macosx-10.9-universal2-cpython-39/src/lxml/etree.o -w -flat_namespace
src/lxml/etree.c:96:10: fatal error: 'Python.h' file not found
#include "Python.h"
^~~~~~~~~~
1 error generated.
Compile failed: command '/usr/bin/clang' failed with exit code 1
cc -arch x86_64 -I/usr/include/libxml2 -c /var/folders/cf/lh0781v528b2s9g1hk8v7bg40000gn/T/xmlXPathInit1vfqpnc0.c -o var/folders/cf/lh0781v528b2s9g1hk8v7bg40000gn/T/xmlXPathInit1vfqpnc0.o
cc -arch x86_64 var/folders/cf/lh0781v528b2s9g1hk8v7bg40000gn/T/xmlXPathInit1vfqpnc0.o -lxml2 -o a.out
error: command '/usr/bin/clang' failed with exit code 1
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: legacy-install-failure
× Encountered error while trying to install package.
╰─> lxml
Try using pip3 install lxml, But the above problems still occur
Related
Can anyone help me with this issue?
In order to use dealii, I tried to install p4est using the command
./configure && make && make install
and
cmake .. -DP4EST_DIR=/usr/local -DDEAL_II_WITH_P4EST=ON -DDEAL_II_WITH_MPI=ON -DCMAKE_INSTALL_PREFIX=/usr/local
under "build" folder, but some error occurs.
I also opened the file dealii-9.0.0/build/CMakeFiles/CMakeError.log, it says:
Source file was:
int main() { return 0; }
Performing C++ SOURCE FILE Test rt_LIBRARY failed with the following output:
Change Dir: /Users/chuxiaoyun/Downloads/dealii-9.0.0/build/CMakeFiles/CMakeScratch/TryCompile-Fscvq9
Run Build Command(s):/usr/bin/make -f Makefile cmTC_bc7f9/fast && /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTC_bc7f9.dir/build.make CMakeFiles/cmTC_bc7f9.dir/build
Building CXX object CMakeFiles/cmTC_bc7f9.dir/src.cxx.o
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -Drt_LIBRARY -arch arm64 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.1.sdk -mmacosx-version-min=11.6 -MD -MT CMakeFiles/cmTC_bc7f9.dir/src.cxx.o -MF CMakeFiles/cmTC_bc7f9.dir/src.cxx.o.d -o CMakeFiles/cmTC_bc7f9.dir/src.cxx.o -c /Users/chuxiaoyun/Downloads/dealii-9.0.0/build/CMakeFiles/CMakeScratch/TryCompile-Fscvq9/src.cxx
Linking CXX executable cmTC_bc7f9
/opt/homebrew/Cellar/cmake/3.25.0/bin/cmake -E cmake_link_script CMakeFiles/cmTC_bc7f9.dir/link.txt --verbose=1
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -arch arm64 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.1.sdk -mmacosx-version-min=11.6 -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_bc7f9.dir/src.cxx.o -o cmTC_bc7f9 -lrt
ld: library not found for -lrt
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[1]: *** [cmTC_bc7f9] Error 1
make: *** [cmTC_bc7f9/fast] Error 2
CMake Error at cmake/macros/macro_configure_feature.cmake:112 (MESSAGE):
Could not find the p4est library!
Insufficient p4est installation found!
p4est has to be configured with MPI enabled.
Please ensure that a suitable p4est library is installed on your computer.
If the library is not at a default location, either provide some hints for
autodetection,
$ P4EST_DIR="..." cmake <...>
$ cmake -DP4EST_DIR="..." <...>
or set the relevant variables by hand in ccmake.
Call Stack (most recent call first):
cmake/macros/macro_configure_feature.cmake:269 (FEATURE_ERROR_MESSAGE)
cmake/configure/configure_p4est.cmake:78 (CONFIGURE_FEATURE)
cmake/macros/macro_verbose_include.cmake:19 (INCLUDE)
CMakeLists.txt:124 (VERBOSE_INCLUDE)
I guess I haven't installed p4est correctly, so I configure it again.
# p4est-2.8 ./configure --enable-mpi.
( Here shows we are using MPI. I also tried p4est-2.8 ./configure --enable-mpi --prefix=/usr/local)
Then I tried to build and install p4est, but it gives me an error during installation:
# make
# ➜ p4est-2.8 make install
/Applications/Xcode.app/Contents/Developer/usr/bin/make install-recursive
Making install in sc
/Applications/Xcode.app/Contents/Developer/usr/bin/make install-am
build-aux/install-sh -c -d '/Users/xiaoyun/Downloads/p4est-2.8/local/lib'
/bin/sh ./libtool --mode=install /usr/bin/install -c src/libsc.la '/Users/xiaoyun/Downloads/p4est-2.8/local/lib'
libtool: install: /usr/bin/install -c src/.libs/libsc.0.dylib /Users/xiaoyun/Downloads/p4est-2.8/local/lib/libsc.0.dylib
install: /Users/xiaoyun/Downloads/p4est-2.8/local/lib/libsc.0.dylib: Permission denied
make[4]: *** [install-libLTLIBRARIES] Error 71
make[3]: *** [install-am] Error 2
make[2]: *** [install] Error 2
make[1]: *** [install-recursive] Error 1
I have no idea why the permission is denied, I also tried sudo make install:
objc[71909]: Class AMSupportURLConnectionDelegate is implemented in both /usr/lib/libauthinstall.dylib (0x20230f7e8) and /System/Library/PrivateFrameworks/MobileDevice.framework/Versions/A/MobileDevice (0x10c9082c8). One of the two will be used. Which one is undefined.
objc[71909]: Class AMSupportURLSession is implemented in both /usr/lib/libauthinstall.dylib (0x20230f838) and /System/Library/PrivateFrameworks/MobileDevice.framework/Versions/A/MobileDevice (0x10c908318). One of the two will be used. Which one is undefined.
shell-init: error retrieving current directory: getcwd: cannot access parent directories: Operation not permitted
job-working-directory: error retrieving current directory: getcwd: cannot access parent directories: Operation not permitted
make: getcwd: Operation not permitted
make: Nothing to be done for `install'.
Envs: Ubuntu 18.04, Miniconda3, python=3.7(GCC=7.3.0), GCC -v (7.4.0)
The error occurs when I run the following command:
scons build/X86/gem5.opt -j8
The error is as follow:
[ LINK] -> X86/marshal
lto1: internal compiler error: in lto_tag_to_tree_code, at lto-streamer.h:1005
Please submit a full bug report,
with preprocessed source if appropriate.
See <file:///usr/share/doc/gcc-7/README.Bugs> for instructions.
lto-wrapper: fatal error: g++ returned 1 exit status
compilation terminated.
/usr/bin/ld: error: lto-wrapper failed
collect2: error: ld returned 1 exit status
scons: *** [build/X86/marshal] Error 1
scons: building terminated because of errors.
And I am wondering how to fix it.
enter code hereerror: command '/usr/bin/clang' failed with exit status 1
----------------------------------------
Command "/Library/Frameworks/Python.framework/Versions/3.6/bin/python3.6 -u -c "import setuptools, tokenize;file='/private/var/folders/hl/zm3tpkmd4ws1b21nk792wdj80000gn/T/pip-build-g2pxxnlc/murmurhash/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record /var/folders/hl/zm3tpkmd4ws1b21nk792wdj80000gn/T/pip-wjdy1tf5-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/var/folders/hl/zm3tpkmd4ws1b21nk792wdj80000gn/T/pip-build-g2pxxnlc/murmurhash/
enter code hereFailed building wheel for regex
Running setup.py clean for regex
Failed to build regex
Installing collected packages: html5lib, pathlib, regex, msgpack-python, tqdm, toolz
Found existing installation: html5lib 0.999999999
Uninstalling html5lib-0.999999999:
Successfully uninstalled html5lib-0.999999999
Found existing installation: regex 2017.11.9
Uninstalling regex-2017.11.9:
Successfully uninstalled regex-2017.11.9
Running setup.py install for regex ... error
Complete output from command /Users/venkateshpala/anaconda3/bin/python -u -c "import setuptools, tokenize;file='/private/var/folders/hl/zm3tpkmd4ws1b21nk792wdj80000gn/T/pip-build-ltar9s28/regex/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record /var/folders/hl/zm3tpkmd4ws1b21nk792wdj80000gn/T/pip-edv9r7il-record/install-record.txt --single-version-externally-managed --compile:
/Users/venkateshpala/anaconda3/lib/python3.6/site-packages/setuptools/dist.py:351: UserWarning: Normalizing '2017.04.05' to '2017.4.5'
normalized_version,
running install
running build
running build_py
creating build
creating build/lib.macosx-10.7-x86_64-3.6
copying Python3/regex.py -> build/lib.macosx-10.7-x86_64-3.6
copying Python3/_regex_core.py -> build/lib.macosx-10.7-x86_64-3.6
copying Python3/test_regex.py -> build/lib.macosx-10.7-x86_64-3.6
running build_ext
building '_regex' extension
creating build/temp.macosx-10.7-x86_64-3.6
creating build/temp.macosx-10.7-x86_64-3.6/Python3
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/venkateshpala/anaconda3/include -arch x86_64 -I/Users/venkateshpala/anaconda3/include -arch x86_64 -I/Users/venkateshpala/anaconda3/include/python3.6m -c Python3/_regex.c -o build/temp.macosx-10.7-x86_64-3.6/Python3/_regex.o
xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun
error: command 'gcc' failed with exit status 1
----------------------------------------
Rolling back uninstall of regex
Command "/Users/venkateshpala/anaconda3/bin/python -u -c "import setuptools, tokenize;file='/private/var/folders/hl/zm3tpkmd4ws1b21nk792wdj80000gn/T/pip-build-ltar9s28/regex/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record /var/folders/hl/zm3tpkmd4ws1b21nk792wdj80000gn/T/pip-edv9r7il-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/var/folders/hl/zm3tpkmd4ws1b21nk792wdj80000gn/T/pip-build-ltar9s28/regex/
The thing is there are some libraries that we(macOs users) can't install unless there is Xcode installed or binaries of Xcode is what I was asked for during the time of Installation after which I was able to download and run the spaCy on my Machine.
in your log:
command 'gcc' failed with exit status 1
Installing gcc might fix the error, or another compatible compiler symlinked to gcc.
Ubuntu 16.04
gcc 5.4.0
java 1.8.0_91
bazel 0.3.1 (download the releases , haven't build from source because it build fail)
I change the config file follow the discussion here and here because it works for ./configure.
I clone the lastest code and configure without GPU. Here is my build instruction at the root directory of tensorflow
bazel build -c opt //tensorflow/tools/pip_package:build_pip_package
The error log:
ERROR: /home/gt/.cache/bazel/_bazel_gt/3d5d29ec73796bda2fc5b2dffed26f47/external/protobuf/BUILD:333:1: Linking of rule '#protobuf//:protoc' failed: gcc failed: error executing command /usr/bin/gcc -o bazel-out/host/bin/external/protobuf/protoc -Wl,-no-as-needed -B/usr/bin -B/usr/bin -pass-exit-codes '-Wl,--build-id=md5' '-Wl,--hash-style=gnu' -Wl,-S -Wl,--gc-sections ... (remaining 1 argument(s) skipped): com.google.devtools.build.lib.shell.BadExitStatusException: Process exited with status 1.
bazel-out/host/bin/external/protobuf/_objs/protoc/external/protobuf/src/google/protobuf/compiler/main.o: In function `main':
main.cc:(.text.startup.main+0x2db): undefined reference to `vtable for google::protobuf::compiler::php::Generator'
main.cc:(.text.startup.main+0x642): undefined reference to `vtable for google::protobuf::compiler::php::Generator'
main.cc:(.text.startup.main+0x740): undefined reference to `vtable for google::protobuf::compiler::php::Generator'
collect2: error: ld returned 1 exit status
Target //tensorflow/tools/pip_package:build_pip_package failed to build
Use --verbose_failures to see the command lines of failed build steps.
This is a bug in protobuf, we signaled it already two weeks ago. See https://github.com/google/protobuf/issues/2133
Trying to install SyntaxNet on Ubuntu 14.04 LTS, build fails with gcc unrecognized command line option '-h'.
Searched gcc documentation and there seems to be no such command line option.
Have anybody seen this?
sudo /home/user/bin/bazel test --linkopt=-headerpad_max_install_names --spawn_strategy=standalone --genrule_strategy=standalone \
syntaxnet/... util/utf8/...
INFO: Found 65 targets and 12 test targets...
ERROR: /home/user/.cache/bazel/_bazel_root/1a72b3057373bad6ae8a8f20db5423d4/external/re2/BUILD:9:1: Linking of rule '#re2//:re2' failed: gcc failed: error executing command /usr/bin/gcc -shared -o bazel-out/local-opt/bin/external/re2/libre2.so -pthread -no-canonical-prefixes -B/usr/bin -B/usr/bin -pass-exit-codes '-Wl,--build-id=md5' '-Wl,--hash-style=gnu' ... (remaining 3 argument(s) skipped): com.google.devtools.build.lib.shell.BadExitStatusException: Process exited with status 1.
gcc: error: unrecognized command line option '-h'
INFO: Elapsed time: 0.857s, Critical Path: 0.45s