I'm trying to build a regression model in keras, the input will be a normalized greyscale image, and the output of the model will be a normalized greyscale image too.
I'm aware that a sigmoid at the output is not ideal for regression models since it gives a probability between [0 , 1] which is good for classification problems.
but since my data is already normalized between [0 , 1], would a sigmoid output be a good idea ?
Thank you
Generally the Linear activation function is used for regression problems.
Sigmoid activation function is not used for normalizing the data. This is mostly used for binary classification problems when there are 2 values(0 or 1) that need to be predicted for each binary class. Values below 0.5 will be assumed as class 0 and >0.5 will be taken as class 1(for the class between 0,1).
If you have a multi classification problem, you may need to use Softmax activation function to get the probability of each class and then use argmax() to get the high probability index to define the specific class among all other probabilities.
You can follow this link for more details.
Related
According to my knowledge(please correct me if I'm wrong),
Multi-label classification(mutually inclusive) i.e., samples might have more than 1 correct values (for example movie genre, disease detection, etc).
Multi-Class classification(mutually exclusive) i.e., samples will always have 1 correct value (for example Cat or Dog, object detection, etc) this includes Binary Classification.
Assuming output is one-hot encoding.
What are the Loss function and metrics on has to use for these 2 types?
loss func. metrics
1. multi-label: (binary, categorical) (binary_accuracy, TopKCategorical accuracy, categorical_accuracy, AUC)
2. multi-class: (binary) (binary_accuracy,f1, recall, precision)
Please tell me from the above table which of them is/are more suitable, which of them is/are wrong & Why?
If you are trying to use multi-class classification provided that the labels (y) is one hot encoded, use the loss function as categorical crossentropy and use adam optimizer (It is suitable for most cases). Also, while using multi-class classification, the number of output nodes should be the same as the number of classes (or) labels. Say if your model is going to classify the input into 4 classes, You can configure the output layer as follows..
model.add(4, activation = "softmax")
Also, forgot to mention that softmax activation should be used in the output layer for multiclass classification problems.
Incase if your y is not one hot encoded, I would advise you to choose the loss function as sparse categorical crossentropy. No other changes will be necessary.
Also, I usually split the data into test data and train data and feed them to the model like this to get the accuracy in each epoch..
history = model.fit(train_data, validation_data = test_data, epochs = 10)
Hope it solved your problem.
I am still relatively new to the world of Deep Learning. I wanted to create a Deep Learning model (preferably using Tensorflow/Keras) for image anomaly detection. By anomaly detection I mean, essentially a OneClassSVM.
I have already tried sklearn's OneClassSVM using HOG features from the image. I was wondering if there is some example of how I can do this in deep learning. I looked up but couldn't find one single code piece that handles this case.
The way of doing this in Keras is with the KerasRegressor wrapper module (they wrap sci-kit learn's regressor interface). Useful information can also be found in the source code of that module. Basically you first have to define your Network Model, for example:
def simple_model():
#Input layer
data_in = Input(shape=(13,))
#First layer, fully connected, ReLU activation
layer_1 = Dense(13,activation='relu',kernel_initializer='normal')(data_in)
#second layer...etc
layer_2 = Dense(6,activation='relu',kernel_initializer='normal')(layer_1)
#Output, single node without activation
data_out = Dense(1, kernel_initializer='normal')(layer_2)
#Save and Compile model
model = Model(inputs=data_in, outputs=data_out)
#you may choose any loss or optimizer function, be careful which you chose
model.compile(loss='mean_squared_error', optimizer='adam')
return model
Then, pass it to the KerasRegressor builder and fit with your data:
from keras.wrappers.scikit_learn import KerasRegressor
#chose your epochs and batches
regressor = KerasRegressor(build_fn=simple_model, nb_epoch=100, batch_size=64)
#fit with your data
regressor.fit(data, labels, epochs=100)
For which you can now do predictions or obtain its score:
p = regressor.predict(data_test) #obtain predicted value
score = regressor.score(data_test, labels_test) #obtain test score
In your case, as you need to detect anomalous images from the ones that are ok, one approach you can take is to train your regressor by passing anomalous images labeled 1 and images that are ok labeled 0.
This will make your model to return a value closer to 1 when the input is an anomalous image, enabling you to threshold the desired results. You can think of this output as its R^2 coefficient to the "Anomalous Model" you trained as 1 (perfect match).
Also, as you mentioned, Autoencoders are another way to do anomaly detection. For this I suggest you take a look at the Keras Blog post Building Autoencoders in Keras, where they explain in detail about the implementation of them with the Keras library.
It is worth noticing that Single-class classification is another way of saying Regression.
Classification tries to find a probability distribution among the N possible classes, and you usually pick the most probable class as the output (that is why most Classification Networks use Sigmoid activation on their output labels, as it has range [0, 1]). Its output is discrete/categorical.
Similarly, Regression tries to find the best model that represents your data, by minimizing the error or some other metric (like the well-known R^2 metric, or Coefficient of Determination). Its output is a real number/continuous (and the reason why most Regression Networks don't use activations on their outputs). I hope this helps, good luck with your coding.
Appologizes for misuse of technical terms.
I am working on a project of semantic segmentation via CNNs ; trying to implement an architecture of type Encoder-Decoder, therefore output is the same size as the input.
How do you design the labels ?
What loss function should one apply ? Especially in the situation of heavy class inbalance (but the ratio between the classes is variable from image to image).
The problem deals with two classes (objects of interest and background). I am using Keras with tensorflow backend.
So far, I am going with designing expected outputs to be the same dimensions as the input images, applying pixel-wise labeling. Final layer of model has either softmax activation (for 2 classes), or sigmoid activation ( to express probability that the pixels belong to the objects class). I am having trouble with designing a suitable objective function for such a task, of type:
function(y_pred,y_true),
in agreement with Keras.
Please,try to be specific with the dimensions of tensors involved (input/output of the model). Any thoughts and suggestions are much appreciated. Thank you !
Actually when you use a TensorFlow backend you could simply apply a predefined Keras objectives in a following manner:
output = Convolution2D(number_of_classes, # 1 for binary case
filter_height,
filter_width,
activation = "softmax")(input_to_output) # or "sigmoid" for binary
...
model.compile(loss = "categorical_crossentropy", ...) # or "binary_crossentropy" for binary
And then feed either a one-hot encoded feature map or matrix of shape (image_height, image_width) with integer encoded classes (remember than in this case you should use sparse_categorical_crossentropy as a loss).
To deal with a class inbalance (I guess it's beacuse of a backgroud class) I strongly recommend you to read carefully answers to this Stack Overflow question.
I suggest starting with a base architecture used in practice like this one in nerve-segmentation: https://github.com/EdwardTyantov/ultrasound-nerve-segmentation. Here a dice_loss is used as a loss function. This works very well for a two class problem as has been shown in literature: https://arxiv.org/pdf/1608.04117.pdf.
Another loss function that has been widely used is cross entropy for such a problem. For problems like yours most commonly long and short skip connections are deployed to stabilize training as denoted in the paper above.
Two ways :
You could try 'flattening':
model.add(Reshape(NUM_CLASSES,HEIGHT*WIDTH)) #shape : HEIGHT x WIDTH x NUM_CLASSES
model.add(Permute(2,1)) # now itll be NUM_CLASSES x HEIGHT x WIDTH
#Use some activation here- model.activation()
#You can use Global averaging or Softmax
One hot encoding every pixel:
In this case your final layer should Upsample/Unpool/Deconvolve to HEIGHT x WIDTH x CLASSES. So your output is essentially of the shape: (HEIGHT,WIDTH,NUM_CLASSES).
This question already has answers here:
What are logits? What is the difference between softmax and softmax_cross_entropy_with_logits?
(8 answers)
Closed 2 years ago.
In the following TensorFlow function, we must feed the activation of artificial neurons in the final layer. That I understand. But I don't understand why it is called logits? Isn't that a mathematical function?
loss_function = tf.nn.softmax_cross_entropy_with_logits(
logits = last_layer,
labels = target_output
)
Logits is an overloaded term which can mean many different things:
In Math, Logit is a function that maps probabilities ([0, 1]) to R ((-inf, inf))
Probability of 0.5 corresponds to a logit of 0. Negative logit correspond to probabilities less than 0.5, positive to > 0.5.
In ML, it can be
the vector of raw (non-normalized) predictions that a classification
model generates, which is ordinarily then passed to a normalization
function. If the model is solving a multi-class classification
problem, logits typically become an input to the softmax function. The
softmax function then generates a vector of (normalized) probabilities
with one value for each possible class.
Logits also sometimes refer to the element-wise inverse of the sigmoid function.
Just adding this clarification so that anyone who scrolls down this much can at least gets it right, since there are so many wrong answers upvoted.
Diansheng's answer and JakeJ's answer get it right.
A new answer posted by Shital Shah is an even better and more complete answer.
Yes, logit as a mathematical function in statistics, but the logit used in context of neural networks is different. Statistical logit doesn't even make any sense here.
I couldn't find a formal definition anywhere, but logit basically means:
The raw predictions which come out of the last layer of the neural network.
1. This is the very tensor on which you apply the argmax function to get the predicted class.
2. This is the very tensor which you feed into the softmax function to get the probabilities for the predicted classes.
Also, from a tutorial on official tensorflow website:
Logits Layer
The final layer in our neural network is the logits layer, which will return the raw values for our predictions. We create a dense layer with 10 neurons (one for each target class 0–9), with linear activation (the default):
logits = tf.layers.dense(inputs=dropout, units=10)
If you are still confused, the situation is like this:
raw_predictions = neural_net(input_layer)
predicted_class_index_by_raw = argmax(raw_predictions)
probabilities = softmax(raw_predictions)
predicted_class_index_by_prob = argmax(probabilities)
where, predicted_class_index_by_raw and predicted_class_index_by_prob will be equal.
Another name for raw_predictions in the above code is logit.
As for the why logit... I have no idea. Sorry.
[Edit: See this answer for the historical motivations behind the term.]
Trivia
Although, if you want to, you can apply statistical logit to probabilities that come out of the softmax function.
If the probability of a certain class is p,
Then the log-odds of that class is L = logit(p).
Also, the probability of that class can be recovered as p = sigmoid(L), using the sigmoid function.
Not very useful to calculate log-odds though.
Summary
In context of deep learning the logits layer means the layer that feeds in to softmax (or other such normalization). The output of the softmax are the probabilities for the classification task and its input is logits layer. The logits layer typically produces values from -infinity to +infinity and the softmax layer transforms it to values from 0 to 1.
Historical Context
Where does this term comes from? In 1930s and 40s, several people were trying to adapt linear regression to the problem of predicting probabilities. However linear regression produces output from -infinity to +infinity while for probabilities our desired output is 0 to 1. One way to do this is by somehow mapping the probabilities 0 to 1 to -infinity to +infinity and then use linear regression as usual. One such mapping is cumulative normal distribution that was used by Chester Ittner Bliss in 1934 and he called this "probit" model, short for "probability unit". However this function is computationally expensive while lacking some of the desirable properties for multi-class classification. In 1944 Joseph Berkson used the function log(p/(1-p)) to do this mapping and called it logit, short for "logistic unit". The term logistic regression derived from this as well.
The Confusion
Unfortunately the term logits is abused in deep learning. From pure mathematical perspective logit is a function that performs above mapping. In deep learning people started calling the layer "logits layer" that feeds in to logit function. Then people started calling the output values of this layer "logit" creating the confusion with logit the function.
TensorFlow Code
Unfortunately TensorFlow code further adds in to confusion by names like tf.nn.softmax_cross_entropy_with_logits. What does logits mean here? It just means the input of the function is supposed to be the output of last neuron layer as described above. The _with_logits suffix is redundant, confusing and pointless. Functions should be named without regards to such very specific contexts because they are simply mathematical operations that can be performed on values derived from many other domains. In fact TensorFlow has another similar function sparse_softmax_cross_entropy where they fortunately forgot to add _with_logits suffix creating inconsistency and adding in to confusion. PyTorch on the other hand simply names its function without these kind of suffixes.
Reference
The Logit/Probit lecture slides is one of the best resource to understand logit. I have also updated Wikipedia article with some of above information.
Logit is a function that maps probabilities [0, 1] to [-inf, +inf].
Softmax is a function that maps [-inf, +inf] to [0, 1] similar as Sigmoid. But Softmax also normalizes the sum of the values(output vector) to be 1.
Tensorflow "with logit": It means that you are applying a softmax function to logit numbers to normalize it. The input_vector/logit is not normalized and can scale from [-inf, inf].
This normalization is used for multiclass classification problems. And for multilabel classification problems sigmoid normalization is used i.e. tf.nn.sigmoid_cross_entropy_with_logits
Personal understanding, in TensorFlow domain, logits are the values to be used as input to softmax. I came to this understanding based on this tensorflow tutorial.
https://www.tensorflow.org/tutorials/layers
Although it is true that logit is a function in maths(especially in statistics), I don't think that's the same 'logit' you are looking at. In the book Deep Learning by Ian Goodfellow, he mentioned,
The function σ−1(x) is called the logit in statistics, but this term
is more rarely used in machine learning. σ−1(x) stands for the
inverse function of logistic sigmoid function.
In TensorFlow, it is frequently seen as the name of last layer. In Chapter 10 of the book Hands-on Machine Learning with Scikit-learn and TensorFLow by Aurélien Géron, I came across this paragraph, which stated logits layer clearly.
note that logits is the output of the neural network before going
through the softmax activation function: for optimization reasons, we
will handle the softmax computation later.
That is to say, although we use softmax as the activation function in the last layer in our design, for ease of computation, we take out logits separately. This is because it is more efficient to calculate softmax and cross-entropy loss together. Remember that cross-entropy is a cost function, not used in forward propagation.
(FOMOsapiens).
If you check math Logit function, it converts real space from [0,1] interval to infinity [-inf, inf].
Sigmoid and softmax will do exactly the opposite thing. They will convert the [-inf, inf] real space to [0, 1] real space.
This is why, in machine learning we may use logit before sigmoid and softmax function (since they match).
And this is why "we may call" anything in machine learning that goes in front of sigmoid or softmax function the logit.
Here is G. Hinton video using this term.
Here is a concise answer for future readers. Tensorflow's logit is defined as the output of a neuron without applying activation function:
logit = w*x + b,
x: input, w: weight, b: bias. That's it.
The following is irrelevant to this question.
For historical lectures, read other answers. Hats off to Tensorflow's "creatively" confusing naming convention. In PyTorch, there is only one CrossEntropyLoss and it accepts un-activated outputs. Convolutions, matrix multiplications and activations are same level operations. The design is much more modular and less confusing. This is one of the reasons why I switched from Tensorflow to PyTorch.
logits
The vector of raw (non-normalized) predictions that a classification model generates, which is ordinarily then passed to a normalization function. If the model is solving a multi-class classification problem, logits typically become an input to the softmax function. The softmax function then generates a vector of (normalized) probabilities with one value for each possible class.
In addition, logits sometimes refer to the element-wise inverse of the sigmoid function. For more information, see tf.nn.sigmoid_cross_entropy_with_logits.
official tensorflow documentation
They are basically the fullest learned model you can get from the network, before it's been squashed down to apply to only the number of classes we are interested in. Check out how some researchers use them to train a shallow neural net based on what a deep network has learned: https://arxiv.org/pdf/1312.6184.pdf
It's kind of like how when learning a subject in detail, you will learn a great many minor points, but then when teaching a student, you will try to compress it to the simplest case. If the student now tried to teach, it'd be quite difficult, but would be able to describe it just well enough to use the language.
The logit (/ˈloʊdʒɪt/ LOH-jit) function is the inverse of the sigmoidal "logistic" function or logistic transform used in mathematics, especially in statistics. When the function's variable represents a probability p, the logit function gives the log-odds, or the logarithm of the odds p/(1 − p).
See here: https://en.wikipedia.org/wiki/Logit
In the deep learning implementations related to object detection and semantic segmentation, I have seen the output layers using either sigmoid or softmax. I am not very clear when to use which? It seems to me both of them can support these tasks. Are there any guidelines for this choice?
softmax() helps when you want a probability distribution, which sums up to 1. sigmoid is used when you want the output to be ranging from 0 to 1, but need not sum to 1.
In your case, you wish to classify and choose between two alternatives. I would recommend using softmax() as you will get a probability distribution which you can apply cross entropy loss function on.
The sigmoid and the softmax function have different purposes. For a detailed explanation of when to use sigmoid vs. softmax in neural network design, you can look at this article: "Classification: Sigmoid vs. Softmax."
Short summary:
If you have a multi-label classification problem where there is more than one "right answer" (the outputs are NOT mutually exclusive) then you can use a sigmoid function on each raw output independently. The sigmoid will allow you to have high probability for all of your classes, some of them, or none of them.
If you instead have a multi-class classification problem where there is only one "right answer" (the outputs are mutually exclusive), then use a softmax function. The softmax will enforce that the sum of the probabilities of your output classes are equal to one, so in order to increase the probability of a particular class, your model must correspondingly decrease the probability of at least one of the other classes.
Object detection is object classification used on a sliding window in the image. In classification it is important to find the correct output in some class space. E.g. you detect 10 different objects and you want to know which object is the most likely one in there. Then softmax is good because of its proberty that the whole layer sums up to 1.
Semantic segmentation on the other hand segments the image in some way. I have done semantic medical segmentation and there the output is a binary image. This means you can have sigmoid as output to predict if this pixel belongs to this specific class, because sigmoid values are between 0 and 1 for each output class.
In general Softmax is used (Softmax Classifier) when ‘n’ number of classes are there. Sigmoid or softmax both can be used for binary (n=2) classification.
Sigmoid:
S(x) = 1/ ( 1+ ( e^(-x) ))
Softmax:
σ(x)j = e / **Σ**{k=1 to K} e^zk for(j=1.....K)
Softmax is kind of Multi Class Sigmoid, but if you see the function of Softmax, the sum of all softmax units are supposed to be 1. In sigmoid it’s not really necessary.
Digging deep, you can also use sigmoid for multi-class classification. When you use a softmax, basically you get a probability of each class, (join distribution and a multinomial likelihood) whose sum is bound to be one. In case you use sigmoid for multi class classification, it’d be like a marginal distribution and a Bernoulli likelihood, p(y0/x) , p(y1/x) etc