How do I plot boundary decisions of multiple classifiers in one figure? - matplotlib

I want to plot the decision boundary conditions for multiple decision grain boundary in the same figure
The code is as follows:
import matplotlib.pyplot as plt
from sklearn.datasets import load_iris
from sklearn.linear_model import LogisticRegression
from sklearn.inspection import DecisionBoundaryDisplay
from sklearn.discriminant_analysis import LinearDiscriminantAnalysis,QuadraticDiscriminantAnalysis
from sklearn.ensemble import AdaBoostClassifier,BaggingClassifier,RandomForestClassifier,HistGradientBoostingClassifier
from sklearn.tree import DecisionTreeClassifier
from sklearn.ensemble import VotingClassifier,ExtraTreesClassifier
iris = load_iris()
X = iris.data[:, :2]
classifiers = [LogisticRegression(solver='sag',penalty='l2',multi_class='ovr',
max_iter=25000,random_state=None,fit_intercept=True),
LinearDiscriminantAnalysis(),
QuadraticDiscriminantAnalysis(),
DecisionTreeClassifier(min_samples_leaf=1),
BaggingClassifier(),
RandomForestClassifier(),
AdaBoostClassifier(),
HistGradientBoostingClassifier(),
VotingClassifier(estimators=[('rfc',RandomForestClassifier()),
('dtc',DecisionTreeClassifier())],voting ='soft'),
ExtraTreesClassifier()]
for classifier in classifiers:
classifier.fit(X,iris.target)
disp = DecisionBoundaryDisplay.from_estimator(classifier, X, response_method="predict", xlabel=iris.feature_names[0], ylabel=iris.feature_names[1], alpha=0.5)
disp.ax_.scatter(X[:, 0], X[:, 1], c=iris.target, edgecolor="k")
plt.show()
I did not get the result that I want, I need those plots in the same figure.
Can someone help me in this case?

To get the decision boundaries of different classifiers in one figure, make sure to pass the argument ax in DecisionBoundaryDisplay.from_estimator:
# Assuming there are 10 classifiers
fig, ax = plt.subplots(nrows=5, ncols=2)
ax = ax.T.flatten()
i = 0
for classifier in classifiers:
classifier.fit(X,iris.target)
disp = DecisionBoundaryDisplay.from_estimator(classifier,
X, response_method="predict",
xlabel=iris.feature_names[0], ylabel=iris.feature_names[1],
alpha=0.5, ax=ax[i])
disp.ax_.scatter(X[:, 0], X[:, 1], c=iris.target, edgecolor="k")
# Refer to next Axes in a 5 * 2 grid created by plt.subplots
i += 1
# To get labels for contour plots
labels = np.unique(iris.target)
proxy = [plt.Rectangle((0,0),1,1,fc = pc.get_facecolor()[0]) for pc in disp.surface_.collections]
disp.ax_.legend(proxy, labels)
plt.show()
This gives:
This answer was motivated by this answer and this answer.

Related

Cannot set ylim for sklearn partial dependence plot

I am following this example on sklearn documentation
I want to change the limits of y axis so I can visually compare results from different models.
import pandas as pd
import matplotlib.pyplot as plt
from sklearn.datasets import load_diabetes
from sklearn.tree import DecisionTreeRegressor
from sklearn.inspection import PartialDependenceDisplay
diabetes = load_diabetes()
X = pd.DataFrame(diabetes.data, columns=diabetes.feature_names)
y = diabetes.target
tree = DecisionTreeRegressor()
tree.fit(X, y)
fig, ax = plt.subplots(figsize=(12, 6))
ax.set_ylim(50,300)
tree_disp = PartialDependenceDisplay.from_estimator(tree, X, ["age", "bmi"], ax=ax)
However, it seems that ax.set_ylim get ignored no matter what I specify. On the other hand, ax.set_title given in example works fine.
PartialDependenceDisplay have an axes_ attribute that represents both matplotlib's axes of the figure.
You can modify them as follow:
tree_disp = PartialDependenceDisplay.from_estimator(tree, X, ["age", "bmi"], ax=ax)
tree_disp.axes_[0][0].set_ylim(50,300)
tree_disp.axes_[0][1].set_ylim(50,300)
This will output the following plot:

Set one colorbar for two images/subplots, and another colorbar for third image in 3 panel figure

This MWE from the matplotlib doc is a useful reference.
import numpy as np
import matplotlib.pyplot as plt
# Fixing random state for reproducibility
np.random.seed(19680801)
plt.subplot(311)
plt.imshow(np.random.random((100, 100)))
plt.subplot(312)
plt.imshow(np.random.random((100, 100)))
plt.subplot(313)
plt.imshow(np.random.random((100, 100)))
plt.subplots_adjust(bottom=0.1, right=0.8, top=.9)
cax = plt.axes([0.85, 0.1, 0.075, 0.8])
plt.colorbar(cax=cax)
plt.show()
This produces:
My two main questions are:
How do I get the first two plots to share a colorbar and the third to have its own?
I don't really understand what 'cax' is doing or why the values are what they are.
As the question just says - two plots share a colorbar, you can either have the first two in the first row with a common colorbar, while the third will have another one, or you could do all 3 in separate columns with the first two sharing a colorbar.
Code for first option
import numpy as np
import matplotlib.pyplot as plt
# Fixing random state for reproducibility
np.random.seed(19680801)
fig, ax = plt.subplots()
plt.subplot(221) ## 2x2 plot, 1st item or in position 1,1
plt.imshow(np.random.random((100, 100)))
ax2 = plt.subplot(222)
im2 = ax2.imshow(np.random.random((100, 100)))
plt.colorbar(im2, ax=ax2)
ax3 = plt.subplot(223)
im3 = ax3.imshow(np.random.random((100, 100)))
plt.colorbar(im3, ax=ax3)
plt.show()
Plot
Option 2 code
import numpy as np
import matplotlib.pyplot as plt
# Fixing random state for reproducibility
np.random.seed(19680801)
fig, ax = plt.subplots(figsize=(5,6))
ax1 = plt.subplot(311) ## 3 rows and 1 column, position 1,1 =1
im = ax1.imshow(np.random.random((100, 100)))
ax2 = plt.subplot(312)
im = ax2.imshow(np.random.random((100, 100)))
ax3 = plt.subplot(313)
im3 = ax3.imshow(np.random.random((100, 100)))
plt.colorbar(im3, ax=ax3)
plt.colorbar(im, ax=[ax1, ax2], aspect = 40) ##Common colobar for ax1 and ax2; aspect used to set colorbar thickness/width
plt.show()
Plot
Although I have not used colorbar axis, it is the axis into which the colorbar is drawn, similar to what we have above in ax1, ax2, ax3 above. The numbers are used to specify where the colorbar should be located. Look at the last example here to see how the position is set. Hope this helps

How to plot an kernel density estimation in seaborn scatterplot plot

I would like to plot the same as shown in the picture( but only the red part). The curve is a kernel density estimate based only on the X-values (the y-values are irrelevant and actually all 1,2 or 3. It is here just plotted like this to distinguish between red an blue. I have plotted the scatterplot, but how can I include the kernel density curve on the scatterplot? (the black dotted lines in the curve are just the quartiles and the median).
import seaborn as sns; sns.set()
import matplotlib.pyplot as plt
import pandas as pd
from matplotlib.ticker import MaxNLocator
import matplotlib.pyplot as plt
from scipy.stats import norm
from sklearn.neighbors import KernelDensity
%matplotlib inline
# Change plotting style to ggplot
plt.style.use('ggplot')
from matplotlib.font_manager import FontProperties
X_plot = np.linspace(0, 30, 1000)[:, np.newaxis]
X1 = df[df['Zustandsklasse']==1]['Verweildauer'].values.reshape(-1,1)
X2 = df[df['Zustandsklasse']==2]['Verweildauer'].values.reshape(-1,1)
X3 = df[df['Zustandsklasse']==3]['Verweildauer'].values.reshape(-1,1)
#print(X1)
ax=sns.scatterplot(x="Verweildauer", y="CS_bandwith", data=df, legend="full", alpha=1)
kde=KernelDensity(kernel='gaussian').fit(X1)
log_dens = kde.score_samples(X_plot)
ax.plot(X_plot[:,0], np.exp(log_dens), color ="blue", linestyle="-", label="Gaussian Kernel")
ax.yaxis.set_major_locator(MaxNLocator(integer=True))
ax.invert_yaxis()
plt.ylim(5.5, .5)
ax.set_ylabel("Zustandsklasse")
ax.set_xlabel("Verweildauer in Jahren")
handles, labels = ax.get_legend_handles_labels()
# create the legend again skipping this first entry
leg = ax.legend(handles[1:], labels[1:], loc="lower right", ncol=2, facecolor='silver', fontsize= 7)
ax.set_xticks(np.arange(0, 30, 5))
ax2 = ax.twinx()
#get the ticks at the same heights as the left axis
ax2.set_ylim(ax.get_ylim())
s=[(df["Zustandsklasse"] == t).sum() for t in range(1, 6)]
s.insert(0, 0)
print(s)
ax2.set_yticklabels(s)
ax2.set_ylim(ax.get_ylim())
ax2.set_ylabel("Anzahl Beobachtungen")
ax2.grid(False)
#plt.tight_layout()
plt.show()
Plotting target
Whats is plotted with the code above
It's much easier if you use subplots. Here is an example with seaborn's Titanic dataset:
import pandas as pd
import matplotlib.pyplot as plt
import seaborn as sns
sns.set()
titanic = sns.load_dataset('titanic')
fig, ax = plt.subplots(nrows=3, sharex=True)
ax[2].set_xlabel('Age')
for i in [1, 2, 3]:
age_i = titanic[titanic['pclass'] == i]['age']
ax[i-1].scatter(age_i, [0] * len(age_i))
sns.kdeplot(age_i, ax=ax[i-1], shade=True, legend=False)
ax[i-1].set_yticks([])
ax[i-1].set_ylim(-0.01)
ax[i-1].set_ylabel('Class ' + str(i))

How to have only 1 shared colorbar for multiple plots [duplicate]

I've spent entirely too long researching how to get two subplots to share the same y-axis with a single colorbar shared between the two in Matplotlib.
What was happening was that when I called the colorbar() function in either subplot1 or subplot2, it would autoscale the plot such that the colorbar plus the plot would fit inside the 'subplot' bounding box, causing the two side-by-side plots to be two very different sizes.
To get around this, I tried to create a third subplot which I then hacked to render no plot with just a colorbar present.
The only problem is, now the heights and widths of the two plots are uneven, and I can't figure out how to make it look okay.
Here is my code:
from __future__ import division
import matplotlib.pyplot as plt
import numpy as np
from matplotlib import patches
from matplotlib.ticker import NullFormatter
# SIS Functions
TE = 1 # Einstein radius
g1 = lambda x,y: (TE/2) * (y**2-x**2)/((x**2+y**2)**(3/2))
g2 = lambda x,y: -1*TE*x*y / ((x**2+y**2)**(3/2))
kappa = lambda x,y: TE / (2*np.sqrt(x**2+y**2))
coords = np.linspace(-2,2,400)
X,Y = np.meshgrid(coords,coords)
g1out = g1(X,Y)
g2out = g2(X,Y)
kappaout = kappa(X,Y)
for i in range(len(coords)):
for j in range(len(coords)):
if np.sqrt(coords[i]**2+coords[j]**2) <= TE:
g1out[i][j]=0
g2out[i][j]=0
fig = plt.figure()
fig.subplots_adjust(wspace=0,hspace=0)
# subplot number 1
ax1 = fig.add_subplot(1,2,1,aspect='equal',xlim=[-2,2],ylim=[-2,2])
plt.title(r"$\gamma_{1}$",fontsize="18")
plt.xlabel(r"x ($\theta_{E}$)",fontsize="15")
plt.ylabel(r"y ($\theta_{E}$)",rotation='horizontal',fontsize="15")
plt.xticks([-2.0,-1.5,-1.0,-0.5,0,0.5,1.0,1.5])
plt.xticks([-2.0,-1.5,-1.0,-0.5,0,0.5,1.0,1.5])
plt.imshow(g1out,extent=(-2,2,-2,2))
plt.axhline(y=0,linewidth=2,color='k',linestyle="--")
plt.axvline(x=0,linewidth=2,color='k',linestyle="--")
e1 = patches.Ellipse((0,0),2,2,color='white')
ax1.add_patch(e1)
# subplot number 2
ax2 = fig.add_subplot(1,2,2,sharey=ax1,xlim=[-2,2],ylim=[-2,2])
plt.title(r"$\gamma_{2}$",fontsize="18")
plt.xlabel(r"x ($\theta_{E}$)",fontsize="15")
ax2.yaxis.set_major_formatter( NullFormatter() )
plt.axhline(y=0,linewidth=2,color='k',linestyle="--")
plt.axvline(x=0,linewidth=2,color='k',linestyle="--")
plt.imshow(g2out,extent=(-2,2,-2,2))
e2 = patches.Ellipse((0,0),2,2,color='white')
ax2.add_patch(e2)
# subplot for colorbar
ax3 = fig.add_subplot(1,1,1)
ax3.axis('off')
cbar = plt.colorbar(ax=ax2)
plt.show()
Just place the colorbar in its own axis and use subplots_adjust to make room for it.
As a quick example:
import numpy as np
import matplotlib.pyplot as plt
fig, axes = plt.subplots(nrows=2, ncols=2)
for ax in axes.flat:
im = ax.imshow(np.random.random((10,10)), vmin=0, vmax=1)
fig.subplots_adjust(right=0.8)
cbar_ax = fig.add_axes([0.85, 0.15, 0.05, 0.7])
fig.colorbar(im, cax=cbar_ax)
plt.show()
Note that the color range will be set by the last image plotted (that gave rise to im) even if the range of values is set by vmin and vmax. If another plot has, for example, a higher max value, points with higher values than the max of im will show in uniform color.
You can simplify Joe Kington's code using the axparameter of figure.colorbar() with a list of axes.
From the documentation:
ax
None | parent axes object(s) from which space for a new colorbar axes will be stolen. If a list of axes is given they will all be resized to make room for the colorbar axes.
import numpy as np
import matplotlib.pyplot as plt
fig, axes = plt.subplots(nrows=2, ncols=2)
for ax in axes.flat:
im = ax.imshow(np.random.random((10,10)), vmin=0, vmax=1)
fig.colorbar(im, ax=axes.ravel().tolist())
plt.show()
This solution does not require manual tweaking of axes locations or colorbar size, works with multi-row and single-row layouts, and works with tight_layout(). It is adapted from a gallery example, using ImageGrid from matplotlib's AxesGrid Toolbox.
import numpy as np
import matplotlib.pyplot as plt
from mpl_toolkits.axes_grid1 import ImageGrid
# Set up figure and image grid
fig = plt.figure(figsize=(9.75, 3))
grid = ImageGrid(fig, 111, # as in plt.subplot(111)
nrows_ncols=(1,3),
axes_pad=0.15,
share_all=True,
cbar_location="right",
cbar_mode="single",
cbar_size="7%",
cbar_pad=0.15,
)
# Add data to image grid
for ax in grid:
im = ax.imshow(np.random.random((10,10)), vmin=0, vmax=1)
# Colorbar
ax.cax.colorbar(im)
ax.cax.toggle_label(True)
#plt.tight_layout() # Works, but may still require rect paramater to keep colorbar labels visible
plt.show()
Using make_axes is even easier and gives a better result. It also provides possibilities to customise the positioning of the colorbar.
Also note the option of subplots to share x and y axes.
import numpy as np
import matplotlib.pyplot as plt
import matplotlib as mpl
fig, axes = plt.subplots(nrows=2, ncols=2, sharex=True, sharey=True)
for ax in axes.flat:
im = ax.imshow(np.random.random((10,10)), vmin=0, vmax=1)
cax,kw = mpl.colorbar.make_axes([ax for ax in axes.flat])
plt.colorbar(im, cax=cax, **kw)
plt.show()
As a beginner who stumbled across this thread, I'd like to add a python-for-dummies adaptation of abevieiramota's very neat answer (because I'm at the level that I had to look up 'ravel' to work out what their code was doing):
import numpy as np
import matplotlib.pyplot as plt
fig, ((ax1,ax2,ax3),(ax4,ax5,ax6)) = plt.subplots(2,3)
axlist = [ax1,ax2,ax3,ax4,ax5,ax6]
first = ax1.imshow(np.random.random((10,10)), vmin=0, vmax=1)
third = ax3.imshow(np.random.random((12,12)), vmin=0, vmax=1)
fig.colorbar(first, ax=axlist)
plt.show()
Much less pythonic, much easier for noobs like me to see what's actually happening here.
Shared colormap and colorbar
This is for the more complex case where the values are not just between 0 and 1; the cmap needs to be shared instead of just using the last one.
import numpy as np
from matplotlib.colors import Normalize
import matplotlib.pyplot as plt
import matplotlib.cm as cm
fig, axes = plt.subplots(nrows=2, ncols=2)
cmap=cm.get_cmap('viridis')
normalizer=Normalize(0,4)
im=cm.ScalarMappable(norm=normalizer)
for i,ax in enumerate(axes.flat):
ax.imshow(i+np.random.random((10,10)),cmap=cmap,norm=normalizer)
ax.set_title(str(i))
fig.colorbar(im, ax=axes.ravel().tolist())
plt.show()
As pointed out in other answers, the idea is usually to define an axes for the colorbar to reside in. There are various ways of doing so; one that hasn't been mentionned yet would be to directly specify the colorbar axes at subplot creation with plt.subplots(). The advantage is that the axes position does not need to be manually set and in all cases with automatic aspect the colorbar will be exactly the same height as the subplots. Even in many cases where images are used the result will be satisfying as shown below.
When using plt.subplots(), the use of gridspec_kw argument allows to make the colorbar axes much smaller than the other axes.
fig, (ax, ax2, cax) = plt.subplots(ncols=3,figsize=(5.5,3),
gridspec_kw={"width_ratios":[1,1, 0.05]})
Example:
import matplotlib.pyplot as plt
import numpy as np; np.random.seed(1)
fig, (ax, ax2, cax) = plt.subplots(ncols=3,figsize=(5.5,3),
gridspec_kw={"width_ratios":[1,1, 0.05]})
fig.subplots_adjust(wspace=0.3)
im = ax.imshow(np.random.rand(11,8), vmin=0, vmax=1)
im2 = ax2.imshow(np.random.rand(11,8), vmin=0, vmax=1)
ax.set_ylabel("y label")
fig.colorbar(im, cax=cax)
plt.show()
This works well, if the plots' aspect is autoscaled or the images are shrunk due to their aspect in the width direction (as in the above). If, however, the images are wider then high, the result would look as follows, which might be undesired.
A solution to fix the colorbar height to the subplot height would be to use mpl_toolkits.axes_grid1.inset_locator.InsetPosition to set the colorbar axes relative to the image subplot axes.
import matplotlib.pyplot as plt
import numpy as np; np.random.seed(1)
from mpl_toolkits.axes_grid1.inset_locator import InsetPosition
fig, (ax, ax2, cax) = plt.subplots(ncols=3,figsize=(7,3),
gridspec_kw={"width_ratios":[1,1, 0.05]})
fig.subplots_adjust(wspace=0.3)
im = ax.imshow(np.random.rand(11,16), vmin=0, vmax=1)
im2 = ax2.imshow(np.random.rand(11,16), vmin=0, vmax=1)
ax.set_ylabel("y label")
ip = InsetPosition(ax2, [1.05,0,0.05,1])
cax.set_axes_locator(ip)
fig.colorbar(im, cax=cax, ax=[ax,ax2])
plt.show()
New in matplotlib 3.4.0
Shared colorbars can now be implemented using subfigures:
New Figure.subfigures and Figure.add_subfigure allow ... localized figure artists (e.g., colorbars and suptitles) that only pertain to each subfigure.
The matplotlib gallery includes demos on how to plot subfigures.
Here is a minimal example with 2 subfigures, each with a shared colorbar:
fig = plt.figure(constrained_layout=True)
(subfig_l, subfig_r) = fig.subfigures(nrows=1, ncols=2)
axes_l = subfig_l.subplots(nrows=1, ncols=2, sharey=True)
for ax in axes_l:
im = ax.imshow(np.random.random((10, 10)), vmin=0, vmax=1)
# shared colorbar for left subfigure
subfig_l.colorbar(im, ax=axes_l, location='bottom')
axes_r = subfig_r.subplots(nrows=3, ncols=1, sharex=True)
for ax in axes_r:
mesh = ax.pcolormesh(np.random.randn(30, 30), vmin=-2.5, vmax=2.5)
# shared colorbar for right subfigure
subfig_r.colorbar(mesh, ax=axes_r)
The solution of using a list of axes by abevieiramota works very well until you use only one row of images, as pointed out in the comments. Using a reasonable aspect ratio for figsize helps, but is still far from perfect. For example:
import numpy as np
import matplotlib.pyplot as plt
fig, axes = plt.subplots(nrows=1, ncols=3, figsize=(9.75, 3))
for ax in axes.flat:
im = ax.imshow(np.random.random((10,10)), vmin=0, vmax=1)
fig.colorbar(im, ax=axes.ravel().tolist())
plt.show()
The colorbar function provides the shrink parameter which is a scaling factor for the size of the colorbar axes. It does require some manual trial and error. For example:
fig.colorbar(im, ax=axes.ravel().tolist(), shrink=0.75)
To add to #abevieiramota's excellent answer, you can get the euqivalent of tight_layout with constrained_layout. You will still get large horizontal gaps if you use imshow instead of pcolormesh because of the 1:1 aspect ratio imposed by imshow.
import numpy as np
import matplotlib.pyplot as plt
fig, axes = plt.subplots(nrows=2, ncols=2, constrained_layout=True)
for ax in axes.flat:
im = ax.pcolormesh(np.random.random((10,10)), vmin=0, vmax=1)
fig.colorbar(im, ax=axes.flat)
plt.show()
I noticed that almost every solution posted involved ax.imshow(im, ...) and did not normalize the colors displayed to the colorbar for the multiple subfigures. The im mappable is taken from the last instance, but what if the values of the multiple im-s are different? (I'm assuming these mappables are treated in the same way that the contour-sets and surface-sets are treated.) I have an example using a 3d surface plot below that creates two colorbars for a 2x2 subplot (one colorbar per one row). Although the question asks explicitly for a different arrangement, I think the example helps clarify some things. I haven't found a way to do this using plt.subplots(...) yet because of the 3D axes unfortunately.
If only I could position the colorbars in a better way... (There is probably a much better way to do this, but at least it should be not too difficult to follow.)
import matplotlib
from matplotlib import cm
import matplotlib.pyplot as plt
import numpy as np
from mpl_toolkits.mplot3d import Axes3D
cmap = 'plasma'
ncontours = 5
def get_data(row, col):
""" get X, Y, Z, and plot number of subplot
Z > 0 for top row, Z < 0 for bottom row """
if row == 0:
x = np.linspace(1, 10, 10, dtype=int)
X, Y = np.meshgrid(x, x)
Z = np.sqrt(X**2 + Y**2)
if col == 0:
pnum = 1
else:
pnum = 2
elif row == 1:
x = np.linspace(1, 10, 10, dtype=int)
X, Y = np.meshgrid(x, x)
Z = -np.sqrt(X**2 + Y**2)
if col == 0:
pnum = 3
else:
pnum = 4
print("\nPNUM: {}, Zmin = {}, Zmax = {}\n".format(pnum, np.min(Z), np.max(Z)))
return X, Y, Z, pnum
fig = plt.figure()
nrows, ncols = 2, 2
zz = []
axes = []
for row in range(nrows):
for col in range(ncols):
X, Y, Z, pnum = get_data(row, col)
ax = fig.add_subplot(nrows, ncols, pnum, projection='3d')
ax.set_title('row = {}, col = {}'.format(row, col))
fhandle = ax.plot_surface(X, Y, Z, cmap=cmap)
zz.append(Z)
axes.append(ax)
## get full range of Z data as flat list for top and bottom rows
zz_top = zz[0].reshape(-1).tolist() + zz[1].reshape(-1).tolist()
zz_btm = zz[2].reshape(-1).tolist() + zz[3].reshape(-1).tolist()
## get top and bottom axes
ax_top = [axes[0], axes[1]]
ax_btm = [axes[2], axes[3]]
## normalize colors to minimum and maximum values of dataset
norm_top = matplotlib.colors.Normalize(vmin=min(zz_top), vmax=max(zz_top))
norm_btm = matplotlib.colors.Normalize(vmin=min(zz_btm), vmax=max(zz_btm))
cmap = cm.get_cmap(cmap, ncontours) # number of colors on colorbar
mtop = cm.ScalarMappable(cmap=cmap, norm=norm_top)
mbtm = cm.ScalarMappable(cmap=cmap, norm=norm_btm)
for m in (mtop, mbtm):
m.set_array([])
# ## create cax to draw colorbar in
# cax_top = fig.add_axes([0.9, 0.55, 0.05, 0.4])
# cax_btm = fig.add_axes([0.9, 0.05, 0.05, 0.4])
cbar_top = fig.colorbar(mtop, ax=ax_top, orientation='vertical', shrink=0.75, pad=0.2) #, cax=cax_top)
cbar_top.set_ticks(np.linspace(min(zz_top), max(zz_top), ncontours))
cbar_btm = fig.colorbar(mbtm, ax=ax_btm, orientation='vertical', shrink=0.75, pad=0.2) #, cax=cax_btm)
cbar_btm.set_ticks(np.linspace(min(zz_btm), max(zz_btm), ncontours))
plt.show()
plt.close(fig)
## orientation of colorbar = 'horizontal' if done by column
This topic is well covered but I still would like to propose another approach in a slightly different philosophy.
It is a bit more complex to set-up but it allow (in my opinion) a bit more flexibility. For example, one can play with the respective ratios of each subplots / colorbar:
import matplotlib.pyplot as plt
import numpy as np
from matplotlib.gridspec import GridSpec
# Define number of rows and columns you want in your figure
nrow = 2
ncol = 3
# Make a new figure
fig = plt.figure(constrained_layout=True)
# Design your figure properties
widths = [3,4,5,1]
gs = GridSpec(nrow, ncol + 1, figure=fig, width_ratios=widths)
# Fill your figure with desired plots
axes = []
for i in range(nrow):
for j in range(ncol):
axes.append(fig.add_subplot(gs[i, j]))
im = axes[-1].pcolormesh(np.random.random((10,10)))
# Shared colorbar
axes.append(fig.add_subplot(gs[:, ncol]))
fig.colorbar(im, cax=axes[-1])
plt.show()
The answers above are great, but most of them use the fig.colobar() method applied to a fig object. This example shows how to use the plt.colobar() function, applied directly to pyplot:
def shared_colorbar_example():
fig, axs = plt.subplots(nrows=3, ncols=3)
for ax in axs.flat:
plt.sca(ax)
color = np.random.random((10))
plt.scatter(range(10), range(10), c=color, cmap='viridis', vmin=0, vmax=1)
plt.colorbar(ax=axs.ravel().tolist(), shrink=0.6)
plt.show()
shared_colorbar_example()
Since most answers above demonstrated usage on 2D matrices, I went with a simple scatter plot. The shrink keyword is optional and resizes the colorbar.
If vmin and vmax are not specified this approach will automatically analyze all of the subplots for the minimum and maximum value to be used on the colorbar. The above approaches when using fig.colorbar(im) scan only the image passed as argument for min and max values of the colorbar.
Result:

Visualize 1-dimensional data in a sequential colormap

I have a pandas series containing numbers ranging between 0 and 100. I want to visualise it in a horizontal bar consisting of 3 main colours.
I have tried using seaborn but all I can get is a heatmap matrix. I have also tried the below code, which is producing what I need but not in the way I need it.
x = my_column.values
y = x
t = x
fig, (ax1, ax2) = plt.subplots(1, 2)
ax1.scatter(x, y, c=t, cmap='brg')
ax2.scatter(x, y, c=t, cmap='brg')
plt.show()
What I'm looking for is something similar to the below figure, how can I achieve that using matplotlib or seaborn?
The purpose of this is not quite clear, however, the following would produce an image like the one shown in the question:
import numpy as np
import matplotlib.pyplot as plt
from matplotlib.colors import LinearSegmentedColormap
x = np.linspace(100,0,101)
fig, ax = plt.subplots(figsize=(6,1), constrained_layout=True)
cmap = LinearSegmentedColormap.from_list("", ["limegreen", "gold", "crimson"])
ax.imshow([x], cmap=cmap, aspect="auto",
extent=[x[0]-np.diff(x)[0]/2, x[-1]+np.diff(x)[0]/2,0,1])
ax.tick_params(axis="y", left=False, labelleft=False)
plt.show()