currently,MPI is started like this:
QStringList params = QStringList{"mpiexec.exe", "-hosts", QString::number(nodes.size()), ips,
solver.exe,
"--mpi", "-p", QString::number(coreNum),
"../transfer/project/project.json"};
QString param;
for (auto& p : params)
param += p + " ";
start("C:/Windows/System32/cmd.exe /C " + param);
The problem is that only cmd.exe's process handler will be returned,so after solver.exe finised,cmd.exe exits,but both mpiexec.exe and solver.exe won't.Due to the process handlers of the both can't be gotten,no way to stop them.
The question is that,with QT5+Windows,by these invocation chain:
cmd.exe -----> mpiexec.exe -------> solver.exe
How to start mpiexe.exe to ensure both mpiexec.exe and solver.exe can be stopped after solver.exe finished?
Related
I'm working on a bioinformatics pipeline and one of the rule is to perform genome assembly using SPAdes (https://github.com/ablab/spades):
rule perform_de_novo_assembly_using_spades:
input:
bam = input.bam
output:
spades_contigs = directory(_RESULTS_DIR + "assembled_spades/")
threads:
_NBR_CPUS
run:
out_dir = _RESULTS_DIR + "assembled_spades/"
command = "spades.py -t " + str(threads) + " --12 " + input.bam + " -o " + out_dir
shell(command + " || true")
... More rules
onsuccess: print("Pipeline completed successfully!")
onerror: print("One or more errors occurred. Please refer to log file.")
The problem is sometimes for some problematic input files SPAdes can fail, resulting in my workflow being terminated. Therefore I added " || true " to the shell command to run SPAdes (according to this post: What would be an elegant way of preventing snakemake from failing upon shell/R error?) so that workflow will continue despite SPAdes failing. However right now my pipeline will run and still gives the "Pipeline completed successfully!" onsuccess message at the end. Ideally I want to it to print the onerror message "One or more errors occurred. Please refer to log file." Is there a way to make my workflow continue to the end despite SPAdes giving a runtime error and snakemake catching the error so that it displays the onerror message at the end?
I'm actually developing a project that read data from 19 PLCs Siemens S1500 and 1 modicon. I have used the scraper tool following this tutorial:
PLC4x scraper tutorial
but when the scraper is working for a little amount of time I get the following exception:
I have changed the scheduled time between 1 to 100 and I always get the same exception when the scraper reach the same number of received messages.
I have tested if using PlcDriverManager instead of PooledPlcDriverManager could be a solution but the same problem persists.
In my pom.xml I use the following dependency:
<dependency>
<groupId>org.apache.plc4x</groupId>
<artifactId>plc4j-scraper</artifactId>
<version>0.7.0</version>
</dependency>
I have tried to change the version to an older one like 0.6.0 or 0.5.0 but the problem still persists.
If I use the modicon (Modbus TCP) I also get this exception after a little amount of time.
Anyone knows why is happening this error? Thanks in advance.
Edit: With the scraper version 0.8.0-SNAPSHOT I continue having this problem.
Edit2: This is my code, I think the problem can be that in my scraper I am opening a lot of connections and when it reaches 65526 messages it fails. But since all the processing is happenning inside the lambda function and I'm using a PooledPlcDriverManager, I think the scraper is using only one connection so I dont know where is the mistake.
try {
// Create a new PooledPlcDriverManager
PlcDriverManager S7_plcDriverManager = new PooledPlcDriverManager();
// Trigger Collector
TriggerCollector S7_triggerCollector = new TriggerCollectorImpl(S7_plcDriverManager);
// Messages counter
AtomicInteger messagesCounter = new AtomicInteger();
// Configure the scraper, by binding a Scraper Configuration, a ResultHandler and a TriggerCollector together
TriggeredScraperImpl S7_scraper = new TriggeredScraperImpl(S7_scraperConfig, (jobName, sourceName, results) -> {
LinkedList<Object> S7_results = new LinkedList<>();
messagesCounter.getAndIncrement();
S7_results.add(jobName);
S7_results.add(sourceName);
S7_results.add(results);
logger.info("Array: " + String.valueOf(S7_results));
logger.info("MESSAGE number: " + messagesCounter);
// Producer topics routing
String topic = "s7" + S7_results.get(1).toString().substring(S7_results.get(1).toString().indexOf("S7_SourcePLC") + 9 , S7_results.get(1).toString().length());
String key = parseKey_S7("s7");
String value = parseValue_S7(S7_results.getLast().toString(),S7_results.get(1).toString());
logger.info("------- PARSED VALUE -------------------------------- " + value);
// Create my own Kafka Producer
ProducerRecord<String, String> record = new ProducerRecord<String, String>(topic, key, value);
// Send Data to Kafka - asynchronous
producer.send(record, new Callback() {
public void onCompletion(RecordMetadata recordMetadata, Exception e) {
// executes every time a record is successfully sent or an exception is thrown
if (e == null) {
// the record was successfully sent
logger.info("Received new metadata. \n" +
"Topic:" + recordMetadata.topic() + "\n" +
"Partition: " + recordMetadata.partition() + "\n" +
"Offset: " + recordMetadata.offset() + "\n" +
"Timestamp: " + recordMetadata.timestamp());
} else {
logger.error("Error while producing", e);
}
}
});
}, S7_triggerCollector);
S7_scraper.start();
S7_triggerCollector.start();
} catch (ScraperException e) {
logger.error("Error starting the scraper (S7_scrapper)", e);
}
So in the end indeed it was the PLC that was simply hanging up the connection randomly. However the NiFi integration should have handled this situation more gracefully. I implemented a fix for this particular error ... could you please give version 0.8.0-SNAPSHOT a try (or use 0.8.0 if we happen to have released it already)
I am working on simple minecraft launcher using c#. I would like to auto connect the user to our server using IP address and Port when user start minecraft.
To start minecraft I use process with specific arguments :
minecraftGame.StartInfo = new ProcessStartInfo("java");
minecraftGame.StartInfo.Arguments = CreateCommand();
CreateCommand() function create every arguments needed to start correctly the game :
arguments.Append("--username ");
arguments.Append(CommonData.launcherProfileJson.authenticationDatabase.selectedProfile.name + " ");
arguments.Append("--version ");
arguments.Append(ManifestManager.minecraftVersionJson.Id + " ");
arguments.Append("--gameDir ");
arguments.Append(CommonData.aramisFolder + " ");
arguments.Append("--assetsDir ");
arguments.Append(CommonData.aramisFolder + "assets/ ");
arguments.Append("--assetIndex ");
arguments.Append(ManifestManager.minecraftVersionJson.Assets + " ");
arguments.Append("--uuid ");
arguments.Append(CommonData.launcherProfileJson.authenticationDatabase.selectedProfile.id + " ");
arguments.Append("--accessToken ");
arguments.Append(CommonData.launcherProfileJson.authenticationDatabase.accessToken + " ");
arguments.Append("--userType ");
arguments.Append("mojang ");
arguments.Append("--versionType ");
arguments.Append("Vanilla ");
Do someone know the commands to autoconnect minecraft to a server ?
I tried this :
arguments.Append("--versionType ");
arguments.Append("Vanilla ");
arguments.Append("mc.hypixel.net:25565 ");
But commands is ignored.
Then following this page :
I tried to move the line arguments.Append("mc.hypixel.net:25565 "); to the third position (and some others position). But it still doesn't work and command is ignored. Someone got an idea ?
Thanks a lot !
Bye.
I found the solution. You can use specific arguments --server and --port
Bye
I am new to noflo and looking at examples in order to explore it. The spreadsheet example looked interesting but I couldn't make it run. First, it takes some time and manual debugging to identify missing components, not a big deal and I believe will be improved in the future, for now the error message I get is
return process.component.outPorts[port].attach(socket);
^
TypeError: undefined is not a function
Apparently, before this isAddressable() was also undefined. Checked with this SO issue but I don't have any noflo 0.4 as a dependency anywhere. Spent some time to debug it but seemingly stuck at it, decided to post to SO.
The question is, what are the correct steps to run the spreadsheet example?
For reproduction, here is what I have done:
0) install the following components
noflo-adapters
noflo-core
noflo-couchdb
noflo-filesystem
noflo-groups
noflo-objects
noflo-packets
noflo-strings
noflo-tika
noflo-xml
i) edit spreadsheet/parse.fbp, because first error was
throw new Error("No outport '" + port + "' defined in process " + proc
^
Error: No outport 'error' defined in process Read (Read() ERROR -> IN Display())
apparently couchdb ReadDocument component does not provide Error outport. therefore replaced ReadDocument with ReadFile.
18c18
< 'tika-app-0.9.jar' -> TIKA Read(ReadDocument)
---
> 'tika-app-0.9.jar' -> TIKA Read(ReadFile)
ii) at this point, received the following:
if (process.component.outPorts[port].isAddressable()) {
^
TypeError: undefined is not a function
and improvised a stunt by checking if isAddressable is defined at this location of code:
## -259,9 +261,11 ##
throw new Error("No outport '" + port + "' defined in process " + process.id + " (" + (socket.getId()) + ")");
return;
}
- if (process.component.outPorts[port].isAddressable()) {
+ if (process.component.outPorts[port].isAddressable && process.component.outPorts[port].isAddressable()) {
return process.component.outPorts[port].attach(socket, index);
}
return process.component.outPorts[port].attach(socket);
};
and either way fails. Again, the question is What are the correct steps to run the spreadsheet example?
Thanks in advance.
I use UIAutomation to automate an iPad application. I have tried to use
(object) performTaskWithPathArgumentsTimeout(path, args, timeout) to run Safari.app from my script:
var target = UIATarget.localTarget();
var host = target.host();
var result = host.performTaskWithPathArgumentsTimeout("/Applications/Safari.app", ["http://www.google.com"], 30);
UIALogger.logDebug("exitCode: " + result.exitCode);
UIALogger.logDebug("stdout: " + result.stdout);
UIALogger.logDebug("stderr: " + result.stderr);
I got the following results:
exitCode: 5
stdout:
stderr:
I’ve also tried to launch echo:
var target = UIATarget.localTarget();
var host = target.host();
var result = host.performTaskWithPathArgumentsTimeout("/bin/echo", ["Hello
World"], 5);
UIALogger.logDebug("exitCode: " + result.exitCode);
UIALogger.logDebug("stdout: " + result.stdout);
UIALogger.logDebug("stderr: " + result.stderr);
Results:
exitCode: 0
stdout: Hello World
stderr:
So, looks like performTaskWithPathArgumentsTimeout works for specific applications only.
Could you please help me to answer the following questions:
1. What does exitCode = 5 mean?
2. Which processes can be launched using performTaskWithPathArgumentsTimeout function?
1) Exit code 5 is most likely EIO, as defined in : Input/Output error. You're attempting to execute "/Applications/Safari.app", which to the launching task is a directory and not a binary.
2) You can launch any application with performTaskWithPathArgumentsTimeout() that NSTask can launch. As long as it's a valid executable, it should work.
For your specific example though, Safari won't accept an argument passed on the command line like that as a URL to visit. You need to use open /Applications/Safari.app "http://www.google.com" instead:
var result = host.performTaskWithPathArgumentsTimeout("/usr/bin/open", ["/Applications/Safari.app", "http://www.google.com"], 30);