As an example, how do I convert df to df1, by gathering rows into matrices based on shared values in a specific column tidx?
>>> df = pd.DataFrame({'col3':[[1,40],[2,50],[3,60],[4,70]], 'tidx':[21,22,23,21]})
>>> df['col3'] = df['col3'].apply(np.array)
>>> df
col3 tidx
0 [1, 40] 21
1 [2, 50] 22
2 [3, 60] 23
3 [4, 70] 21
>>> df1 = pd.DataFrame({'col3':[[[1,40],[4,70]],[[2,50]],[[3,60]]], 'tidx':[21,22,23]})
>>> df1['col3'] = df1['col3'].apply(np.array)
>>> df1
col3 tidx
0 [[1, 40], [4, 70]] 21
1 [[2, 50]] 22
2 [[3, 60]] 23
You can use .groupby and then apply list function as shown in example below.
df = pd.DataFrame({'col3':[[1,40],[2,50],[3,60],[4,70]], 'tidx':[21,22,23,21]})
df1 = df.groupby('tidx')['col3'].apply(list).reset_index()
Related
This is a similar question to this thread.
Lets consider df as:
df = pd.DataFrame([["a", 2, 3], ["b", 5, 6], ["c", 8, 9],["a", 0, 0], ["a", 8, 7], ["c", 2, 1]], columns = ["A", "B", "C"])
How can you calculate the difference between all rows and the row at Nth index in a group (lowest index for EACH group) for column "B", and put it in column "D"? I want to calculate mean square displacement for my data and I want to calculate the difference of values in a column in each group with the first appeared row in that group.
I tried:
df['D'] = df.groupby(["A"])['B'].sub(df.groupby(['A'])["B"].iloc[0])
Group = df.groupby(["A"])
However using .sub and groupby raise the following error:
AttributeError: 'SeriesGroupBy' object has no attribute 'sub'
the desired result would be like this:
A B C D
0 a 2 3 0 *lowest index in group "a"
1 b 5 6 0 *lowest index in group "b"
2 c 8 9 0 *lowest index in group "c"
3 a 0 0 -2
4 a 8 7 6
5 c 2 1 -6
I guess this answer could be enough of a hint for you:
import pandas as pd
df = pd.DataFrame([["a", 2, 3], ["b", 5, 6], ["c", 8, 9],["a", 0, 0], ["a", 8, 7], ["c", 2, 1]], columns = ["A", "B", "C"])
print("df:")
print(df)
print()
groupA = df.groupby(['A'])
print("groupA:")
print(groupA.groups)
print()
print("lowest indices for each group from columnA:")
lowest_indices = dict()
for k, v in groupA.groups.items():
lowest_indices[k] = v[0]
print(lowest_indices)
print()
columnB = df['B']
print("columnB:")
print(columnB)
print()
df['D'] = df['B']
for i in range(len(df)):
group_at_i = df['A'].iloc[i]
lowest_index_of_that = lowest_indices[group_at_i]
b_element_at_that_index = df['B'].iloc[lowest_index_of_that]
the_difference = df['B'].iloc[i] - b_element_at_that_index
df.loc[i, 'D'] = the_difference
print("df:")
print(df)
Supposing that i have a simple pd.DataFrame like so:
d = {'col1': [1, 20], 'col2': [3, 40], 'col3': [5, 50]}
df = pd.DataFrame(data=d)
df
col1 col2 col4
0 1 3 5
1 20 40 60
is there a way to convert this to nasted pandas Dataframe (df_new) , so as when i call df_new.values[0] taking as ouptut:
array(
[0 1
1 3
2 5
Length: 3, dtype: int], dtype=object)
I still don't think I understand the exact requirement, but here is something:
One way of getting the desired output is this:
>>> pd.Series(df.T[0].values)
0 1
1 3
2 5
dtype: int64
If you want to have these as 2d arrays:
>>> np.array(pd.DataFrame(df.T[0].values).reset_index())
array([[0, 1],
[1, 3],
[2, 5]])
>>> np.array(pd.DataFrame(df.T[1].values).reset_index())
array([[ 0, 20],
[ 1, 40],
[ 2, 50]])
Given the following DataFrame:
pd.DataFrame({
'x': [0, 1],
'y': [0, 1],
'a_idx': [0, 1],
'a_val': [2, 3],
'b_idx': [4, 5],
'b_val': [6, 7],
})
What is the cleanest way to pivot the DataFrame based on the prefix of the idx and val columns if you have an indeterminate amount of unique prefixes (a, b, ... n), so as to obtain the following DataFrame?
pd.DataFrame({
'x': [0, 1, 0, 1],
'y': [0, 1, 0, 1],
'key': ['a','a','b','b'],
'idx': [0, 1, 4, 5],
'val': [2, 3, 6, 7]
})
I am not very knowledgeable in pandas, so my easiest solution was to go earlier in the data generation process and generate a subset of the result DataFrame for each prefix in SQL, and then concat the result sets into a final DataFrame. I'm curious however if there is a simple way to do this using the API of pandas.DataFrame. Is there such a thing?
Let's try wide_to_long with extras:
(pd.wide_to_long(df,stubnames=['a','b'],
i=['x','y'],
j='key',
sep='_',
suffix='\\w+'
)
.unstack('key').stack(level=0).reset_index()
)
Or manually with melt:
out = df.melt(['x', 'y'])
out = (out.join(out['variable'].str.split('_', expand=True))
.rename(columns={0: 'key'})
.pivot_table(index=['x', 'y', 'key'], columns=[1], values='value')
.reset_index()
)
Output:
key x y level_2 idx val
0 0 0 a 0 2
1 0 0 b 4 6
2 1 1 a 1 3
3 1 1 b 5 7
How can I use pd.cut() in Dask?
Because of the large dataset, I am not able to put the whole dataset into memory before finishing the pd.cut().
Current code that is working in Pandas but needs to be changed to Dask:
import pandas as pd
d = {'name': [1, 5, 1, 10, 5, 1], 'amount': [1, 5, 3, 8, 4, 1]}
df = pd.DataFrame(data=d)
#Groupby name and add column sum (of amounts) and count (number of grouped rows)
df = (df.groupby('name')['amount'].agg(['sum', 'count']).reset_index().sort_values(by='name', ascending=True))
print(df.head(15))
#Groupby bins and chnage sum and count based on grouped rows
df = df.groupby(pd.cut(df['name'],
bins=[0,4,8,100],
labels=['namebin1', 'namebin2', 'namebin3']))['sum', 'count'].sum().reset_index()
print(df.head(15))
Output:
name sum count
0 namebin1 5 3
1 namebin2 9 2
2 namebin3 8 1
I tried:
import pandas as pd
import dask.dataframe as dd
d = {'name': [1, 5, 1, 10, 5, 1], 'amount': [1, 5, 3, 8, 4, 1]}
df = pd.DataFrame(data=d)
df = dd.from_pandas(df, npartitions=2)
df = df.groupby('name')['amount'].agg(['sum', 'count']).reset_index()
print(df.head(15))
df = df.groupby(df.map_partitions(pd.cut,
df['name'],
bins=[0,4,8,100],
labels=['namebin1', 'namebin2', 'namebin3']))['sum', 'count'].sum().reset_index()
print(df.head(15))
Gives error:
TypeError("cut() got multiple values for argument 'bins'",)
The reason why you're seeing this error is that pd.cut() is being called with the partition as the first argument which it doesn't expect (see the docs).
You can wrap it in a custom function and call that instead, like so:
import pandas as pd
import dask.dataframe as dd
def custom_cut(partition, bins, labels):
result = pd.cut(x=partition["name"], bins=bins, labels=labels)
return result
d = {'name': [1, 5, 1, 10, 5, 1], 'amount': [1, 5, 3, 8, 4, 1]}
df = pd.DataFrame(data=d)
df = dd.from_pandas(df, npartitions=2)
df = df.groupby('name')['amount'].agg(['sum', 'count']).reset_index()
df = df.groupby(df.map_partitions(custom_cut,
bins=[0,4,8,100],
labels=['namebin1', 'namebin2', 'namebin3']))[['sum', 'count']].sum().reset_index()
df.compute()
name sum count
namebin1 5 3
namebin2 9 2
namebin3 8 1
I have:
df = pd.DataFrame(
[
[22, 33, 44],
[55, 11, 22],
[33, 55, 11],
],
index=["abc", "def", "ghi"],
columns=list("abc")
) # size(3,3)
and:
unique = pd.Series([11, 22, 33, 44, 55]) # size(1,5)
then I create a new df based on unique and df, so that:
df_new = pd.DataFrame(index=unique, columns=df.columns) # size(5,3)
From this newly created df, I'd like to create a new boolean df based on unique and df, so that the end result is:
df_new = pd.DataFrame(
[
[0, 1, 1],
[1, 0, 1],
[1, 1, 0],
[0, 0, 1],
[1, 1, 0],
],
index=unique,
columns=df.columns
)
This new df is either true or false depending on whether the value is present in the original dataframe or not. For example, the first column has three values: [22, 55, 33]. In a df with dimensions (5,3), this first column would be: [0, 1, 1, 0, 1] i.e. [0, 22, 33, 0 , 55]
I tried filter2 = unique.isin(df) but this doesn't work, also notnull. I tried applying a filter but the dimensions returned were incorrect. How can I do this?
Use DataFrame.stack with DataFrame.reset_index, DataFrame.pivot, then check if not missing values by DataFrame.notna, cast to integers for True->1 and False->0 mapping and last remove index and columns names by DataFrame.rename_axis:
df_new = (df.stack()
.reset_index(name='v')
.pivot('v','level_1','level_0')
.notna()
.astype(int)
.rename_axis(index=None, columns=None))
print (df_new)
a b c
11 0 1 1
22 1 0 1
33 1 1 0
44 0 0 1
55 1 1 0
Helper Series is not necessary, but if there is more values or is necessary change order by helper Series use add DataFrame.reindex:
#added 66
unique = pd.Series([11, 22, 33, 44, 55,66])
df_new = (df.stack()
.reset_index(name='v')
.pivot('v','level_1','level_0')
.reindex(unique)
.notna()
.astype(int)
.rename_axis(index=None, columns=None))
print (df_new)
a b c
11 0 1 1
22 1 0 1
33 1 1 0
44 0 0 1
55 1 1 0
66 0 0 0