I need to create a figure in a file without displaying it within IPython notebook. I am not clear on the interaction between IPython and matplotlib.pylab in this regard. But, when I call pylab.savefig("test.png") the current figure get's displayed in addition to being saved in test.png. When automating the creation of a large set of plot files, this is often undesirable. Or in the situation that an intermediate file for external processing by another app is desired.
Not sure if this is a matplotlib or IPython notebook question.
This is a matplotlib question, and you can get around this by using a backend that doesn't display to the user, e.g. 'Agg':
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt
plt.plot([1,2,3])
plt.savefig('/tmp/test.png')
EDIT: If you don't want to lose the ability to display plots, turn off Interactive Mode, and only call plt.show() when you are ready to display the plots:
import matplotlib.pyplot as plt
# Turn interactive plotting off
plt.ioff()
# Create a new figure, plot into it, then close it so it never gets displayed
fig = plt.figure()
plt.plot([1,2,3])
plt.savefig('/tmp/test0.png')
plt.close(fig)
# Create a new figure, plot into it, then don't close it so it does get displayed
plt.figure()
plt.plot([1,3,2])
plt.savefig('/tmp/test1.png')
# Display all "open" (non-closed) figures
plt.show()
We don't need to plt.ioff() or plt.show() (if we use %matplotlib inline). You can test above code without plt.ioff(). plt.close() has the essential role. Try this one:
%matplotlib inline
import pylab as plt
# It doesn't matter you add line below. You can even replace it by 'plt.ion()', but you will see no changes.
## plt.ioff()
# Create a new figure, plot into it, then close it so it never gets displayed
fig = plt.figure()
plt.plot([1,2,3])
plt.savefig('test0.png')
plt.close(fig)
# Create a new figure, plot into it, then don't close it so it does get displayed
fig2 = plt.figure()
plt.plot([1,3,2])
plt.savefig('test1.png')
If you run this code in iPython, it will display a second plot, and if you add plt.close(fig2) to the end of it, you will see nothing.
In conclusion, if you close figure by plt.close(fig), it won't be displayed.
Related
Embed IPython in a script and run:
from IPython import embed
# code ...
embed()
%matplotlib
#^ With or without; same result
fig = plt.figure()
Can't do anything with fig at this point.
It's already shown and the window is displayed,
even though I never called show.
plt.show() # does absolutely nothing
I normally import matplotlib in IPython this way:
%matplotlib inline
import matplotlib.pyplot as plt
ax, fig = plt.subplots()
plt.plot([[1,1], [2,2]])
plt.show()
Does this help?
I am making a python script using the PyCharm IDE, and the idea is to display descriptive statistics and a box plot for each group in a DataFrame. The statistics displays, but the boxplot is nowhere to be seen...
I have tried Googling an answer, but it does not seem this question have been answered before.
import pandas as pd
import matplotlib as plt
(...)
for name, group in grouped:
if len(group) > 3:
print("\n\nNAME: {}".format(name))
print("GROUP: {}".format(group))
print("DESCRIPTIVE STATISTICS
{}".format(group.distance2.describe()))
print(group.distance2.plot.box())
group.distance2.plot.box()
I do not get any error messages, the code runs and completes, but I do not know where the boxplot is supposed to display.
I think the code as it is does not create a matplotlib figure object. Try creating a test data object for group.distance2, then create a matplotlib boxplot object. I am assuming you are using the matplotlib library.
import matplotlib.pyplot as plt
for name, group in grouped:
if len(group) > 3:
data = group.distance2
# create a matplotlib figure object
fig, axs = plt.subplots(1, 1)
# basic plot
axs[0, 0].boxplot(data)
axs[0, 0].set_title('basic plot of group.distance2')
plt.show()
It that works, you can try putting several group data into one figure (axes). Here is more information: https://matplotlib.org/3.1.0/gallery/statistics/boxplot_demo.html
I used matplotlib to create a graphics window, but I do not want the user to manually close it. Is there a way to disable the closing button in the upper right corner? See screenshot
The solution will depend on the backend in use.
PyQt
For the PyQt backend, you can do the following:
import matplotlib
# make sure Qt backend is used
matplotlib.use("Qt4Agg")
from PyQt4 import QtCore
import matplotlib.pyplot as plt
# create a figure and some subplots
fig, ax = plt.subplots(figsize=(4,2))
ax.plot([2,3,5,1])
fig.tight_layout()
win = plt.gcf().canvas.manager.window
win.setWindowFlags(win.windowFlags() | QtCore.Qt.CustomizeWindowHint)
win.setWindowFlags(win.windowFlags() & ~QtCore.Qt.WindowCloseButtonHint)
plt.show()
This will disable the close button (not hide it).
Tk
I'm not sure if Tk is able to control the close button. But what is possible is to draw a completely frameless window.
import matplotlib
# make sure Tk backend is used
matplotlib.use("TkAgg")
import matplotlib.pyplot as plt
# create a figure and some subplots
fig, ax = plt.subplots(figsize=(4,2))
ax.plot([2,3,5,1])
fig.tight_layout()
win = plt.gcf().canvas.manager.window
win.overrideredirect(1) # draws a completely frameless window
plt.show()
I want the text to appear beside the box instead of inside it:
Here is what I did:
import matplotlib as mpl
import matplotlib.pyplot as plt
from custombox import MyStyle
fig = plt.figure(figsize=(10,10))
legend_ax = plt.subplot(111)
legend_ax.annotate("Text",xy=(0.5,0.5),xycoords='data',xytext=(0.5, 0.5),textcoords= ('data'),ha="center",rotation = 180,bbox=dict(boxstyle="angled, pad=0.5", fc='white', lw=4, ec='Black'))
legend_ax.text(0.6,0.5,"Text", ha="center",size=15)
Here is what it gives me:
Note: custombox is similar to the file that is written in this link:
http://matplotlib.org/1.3.1/users/annotations_guide.html
My ultimate aim is to make it look legend like where the symbol (angled box) appears beside the text that represents it.
EDIT 1: As suggested by Ajean I have annotated text separately but I can't turn of the text within the arrow
One way to do it would be to separate the text and the bbox (which you can reproduce using an arrow). The following gives me something close to what you want, I think.
import matplotlib.pyplot as plt
from matplotlib import patches
fig = plt.figure(figsize=(5,5))
ax = fig.add_subplot(111)
ax.annotate("Text", (0.4,0.5))
bb = patches.FancyArrow(0.5,0.5,0.1,0.0,length_includes_head=True, width=0.05,
head_length=0.03, head_width=0.05, fc='white', ec='black',
lw=4)
ax.add_artist(bb)
plt.show()
You can futz with the exact placement as needed. I'm not an expert on all the kwargs, so this may not be the best solution, but it will work.
I need to create a figure in a file without displaying it within IPython notebook. I am not clear on the interaction between IPython and matplotlib.pylab in this regard. But, when I call pylab.savefig("test.png") the current figure get's displayed in addition to being saved in test.png. When automating the creation of a large set of plot files, this is often undesirable. Or in the situation that an intermediate file for external processing by another app is desired.
Not sure if this is a matplotlib or IPython notebook question.
This is a matplotlib question, and you can get around this by using a backend that doesn't display to the user, e.g. 'Agg':
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt
plt.plot([1,2,3])
plt.savefig('/tmp/test.png')
EDIT: If you don't want to lose the ability to display plots, turn off Interactive Mode, and only call plt.show() when you are ready to display the plots:
import matplotlib.pyplot as plt
# Turn interactive plotting off
plt.ioff()
# Create a new figure, plot into it, then close it so it never gets displayed
fig = plt.figure()
plt.plot([1,2,3])
plt.savefig('/tmp/test0.png')
plt.close(fig)
# Create a new figure, plot into it, then don't close it so it does get displayed
plt.figure()
plt.plot([1,3,2])
plt.savefig('/tmp/test1.png')
# Display all "open" (non-closed) figures
plt.show()
We don't need to plt.ioff() or plt.show() (if we use %matplotlib inline). You can test above code without plt.ioff(). plt.close() has the essential role. Try this one:
%matplotlib inline
import pylab as plt
# It doesn't matter you add line below. You can even replace it by 'plt.ion()', but you will see no changes.
## plt.ioff()
# Create a new figure, plot into it, then close it so it never gets displayed
fig = plt.figure()
plt.plot([1,2,3])
plt.savefig('test0.png')
plt.close(fig)
# Create a new figure, plot into it, then don't close it so it does get displayed
fig2 = plt.figure()
plt.plot([1,3,2])
plt.savefig('test1.png')
If you run this code in iPython, it will display a second plot, and if you add plt.close(fig2) to the end of it, you will see nothing.
In conclusion, if you close figure by plt.close(fig), it won't be displayed.