Getting error in Cmake step in Dockerfile installation - cmake

Question

I am new to Docker container and kubenetes cluster. I am trying to run following section of command using buildah
##install cmake
USER root
RUN apt-get update && apt-get -y install cmake
USER ${user}
WORKDIR $HOME
## bustools_dev
RUN git clone https://github.com/Yenaled/bustools.git && \
cd bustools && \
mkdir build && \
cd build
RUN cmake ../
RUN make
RUN cd src
RUN mv bustools bustools_dev
RUN ENV PATH=$HOME/bustools/build/src/:${PATH}
but get the following error. What am I missing here?
STEP 17: WORKDIR $HOME
WARN[0002] SHELL is not supported for OCI image format, [/bin/bash -o pipefail -c] will be ignored. Must use `docker` format
--> 770a1b90326
STEP 18: RUN git clone https://github.com/Yenaled/bustools.git && cd bustools && mkdir build && cd build
Cloning into 'bustools'...
WARN[0005] SHELL is not supported for OCI image format, [/bin/bash -o pipefail -c] will be ignored. Must use `docker` format
--> 2b87555e927
STEP 19: RUN cmake ../
CMake Error: The source directory "/home" does not appear to contain CMakeLists.txt.
Specify --help for usage, or press the help button on the CMake GUI.
error building at STEP "RUN cmake ../": error while running runtime: exit status 1
ERRO[0111] exit status 1

Answer 1

I'd simplify the Dockerfile to avoid the issues with the WORKDIR setup that I think are the cause of the problem:
FROM debian:11
RUN apt-get update \
&& apt-get install --assume-yes --no-install-recommends --quiet \
ca-certificates \
cmake \
git \
g++ \
make \
libzip-dev \
&& apt-get clean all
WORKDIR /usr/local/src
RUN git clone https://github.com/Yenaled/bustools.git
RUN mkdir -p /usr/local/src/bustools/build
RUN cd /usr/local/src/bustools/build \
&& cmake .. \
&& make
[...]
Output
[...]
STEP 3/6: WORKDIR /usr/local/src
--> ffb056fd5b3
STEP 4/6: RUN git clone https://github.com/Yenaled/bustools.git
Cloning into 'bustools'...
--> 83afa44c5c8
STEP 5/6: RUN mkdir -p /usr/local/src/bustools/build
--> 2e6ed328088
STEP 6/6: RUN cd /usr/local/src/bustools/build && cmake .. && make
-- The C compiler identification is GNU 10.2.1
-- The CXX compiler identification is GNU 10.2.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
release mode
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11")
-- Configuring done
-- Generating done
-- Build files have been written to: /usr/local/src/bustools/build
Scanning dependencies of target bustools_core
[ 4%] Building CXX object src/CMakeFiles/bustools_core.dir/BUSData.cpp.o
[ 8%] Building CXX object src/CMakeFiles/bustools_core.dir/Common.cpp.o
[ 13%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_capture.cpp.o
[ 17%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_clusterhist.cpp.o
[ 21%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_collapse.cpp.o
[ 26%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_correct.cpp.o
[ 30%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_count.cpp.o
[ 34%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_extract.cpp.o
[ 39%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_inspect.cpp.o
[ 43%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_linker.cpp.o
[ 47%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_main.cpp.o
[ 52%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_mash.cpp.o
[ 56%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_merge.cpp.o
[ 60%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_predict.cpp.o
[ 65%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_project.cpp.o
[ 69%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_sort.cpp.o
[ 73%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_text.cpp.o
[ 78%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_umicorrect.cpp.o
[ 82%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_whitelist.cpp.o
[ 86%] Building C object src/CMakeFiles/bustools_core.dir/roaring.c.o
[ 91%] Linking CXX static library libbustools_core.a
[ 91%] Built target bustools_core
Scanning dependencies of target bustools
[ 95%] Building CXX object src/CMakeFiles/bustools.dir/bustools_main.cpp.o
[100%] Linking CXX executable bustools
[100%] Built target bustools
--> b08bc457b5f