I am interested on the frag.dat function on seqRFLP, but this function only work for single enzyme per run (enzymes = X).
frag.dat(fil = fas, enznames = X, enzdata = enzdata)
Here is the simple example
directory <- system.file("extdata", package = "seqRFLP")
path <- file.path(directory, "try.fasta")
fas <- read.fasta(path)
frag.dat(fil = fas, enznames = "AluI", enzdata = enzdata)
and the result
enznames recogSite cutting_Site
>try AluI AG'CT 55,94,244,256,343,553
But if i want multiple enzyme at one run, then
frag.dat(fil = fas, enznames = "AluI", "TaqI", enzdata = enzdata)
Error in frag.dat(fil = fas, enznames = "AluI", "TaqI", enzdata = enzdata) :
unused argument ("TaqI")
Any sugestion to run multiple enzyme at once? Thanks in advance.
Related
I use selenium with pytest to do some automation testing and I use a fixture to take a screenshot when it fails here is the code for the fixture:
timestamp = datetime.now().strftime('%H-%M-%S')
pytest_html = item.config.pluginmanager.getplugin('html')
outcome = yield
report = outcome.get_result()
extra = getattr(report, 'extra', [])
if report.when == 'call':
# always add url to report
# extra.append(pytest_html.extras.url('E:\Python Projects\StackField\screenshot'))
xfail = hasattr(report, 'wasxfail')
if (report.skipped and xfail) or (report.failed and not xfail):
feature_request = item.funcargs["request"]
driver = feature_request.getfixturevalue("setup")
img_name = "name.png"
img_path = os.path.join("E:\Python Projects\StackField\screenshot", img_name)
driver.save_screenshot(img_path)
# extra.append(pytest_html.extras.image('E:\Python Projects\StackField\screenshot' + timestamp + '.png'))
if (report.skipped and xfail) or (report.failed and not xfail):
# only add additional html on failure
extra.append(pytest_html.extras.image(img_path))
extra.append(pytest_html.extras.html('<div>Additional HTML</div>'))
report.extra = extra
And I got an issue when more than 1 test is failed the same screenshot is added to the report my next question is how can I add more than 1 screenshot inside?
Thank you in advance!
Seems you save all screenshots with the same name.
Try to set the unique name for the screenshot:
from random import randrange
if (report.skipped and xfail) or (report.failed and not xfail):
feature_request = item.funcargs["request"]
driver = feature_request.getfixturevalue("setup")
timestamp = datetime.now().strftime('%H-%M-%S')
img_name = "name" + timestamp + ".png"
# (even better also add some random number in advance "name" + timestamp + randrange(100) + ".png"
img_path = os.path.join("E:\Python Projects\StackField\screenshot", img_name)
driver.save_screenshot(img_path)
When I run script in game, I got an error message like this:
.\AI\haick.lua:104: bad argument #1 to 'find' (string expected, got nill)
local haick = {}
haick.type = type
haick.tostring = tostring
haick.require = require
haick.error = error
haick.getmetatable = getmetatable
haick.setmetatable = setmetatable
haick.ipairs = ipairs
haick.rawset = rawset
haick.pcall = pcall
haick.len = string.len
haick.sub = string.sub
haick.find = string.find
haick.seed = math.randomseed
haick.max = math.max
haick.abs = math.abs
haick.open = io.open
haick.rename = os.rename
haick.remove = os.remove
haick.date = os.date
haick.exit = os.exit
haick.time = GetTick
haick.actors = GetActors
haick.var = GetV
--> General > Seeding Random:
haick.seed(haick.time())
--> General > Finding Script Location:
local scriptLocation = haick.sub(_REQUIREDNAME, 1, haick.find(_REQUIREDNAME,'/[^\/:*?"<>|]+$'))
Last line (104 in file) causes error and I don`t know how to fix it.
There are links to .lua files below:
https://drive.google.com/file/d/1F90v-h4VjDb0rZUCUETY9684PPGw7IVG/view?usp=sharing
https://drive.google.com/file/d/1fi_wmM3rg7Ov33yM1uo7F_7b-bMPI-Ye/view?usp=sharing
Help, pls!
When you use a function in Lua, you are expected to pass valid arguments for the function.
To use a variable, you must first define it, _REQUIREDNAME in this case is not available, haick.lua file is incomplete. The fault is of the author of the file.
Lua has a very useful reference you can use if you need help, see here
I want to combine two requests to the Google cloud text-to-speech API in a single mp3 output. The reason I need to combine two requests is that the output should contain two different languages.
Below code works fine for many language pair combinations, but unfortunately not for all. If I request e.g. a sentence in English and one in German and combine them everything works. If I request one in English and one in Japanes I can't combine the two files in a single output. The output only contains the first sentence and instead of the second sentence, it outputs silence.
I tried now multiple ways to combine the two outputs but the result stays the same. The code below should show the issue.
Please run the code first with:
python synthesize_bug.py --t1 'Hallo' --code1 de-De --t2 'August' --code2 de-De
This works perfectly.
python synthesize_bug.py --t1 'Hallo' --code1 de-De --t2 'こんにちは' --code2 ja-JP
This doesn't work. The single files are ok, but the combined files contain silence instead of the Japanese part.
Also, if used with two Japanes sentences everything works.
I already filed a bug report at Google with no response yet, but maybe it's just me who is doing something wrong here with encoding assumptions. Hope someone has an idea.
#!/usr/bin/env python
import argparse
# [START tts_synthesize_text_file]
def synthesize_text_file(text1, text2, code1, code2):
"""Synthesizes speech from the input file of text."""
from apiclient.discovery import build
import base64
service = build('texttospeech', 'v1beta1')
collection = service.text()
data1 = {}
data1['input'] = {}
data1['input']['ssml'] = '<speak><break time="2s"/></speak>'
data1['voice'] = {}
data1['voice']['ssmlGender'] = 'FEMALE'
data1['voice']['languageCode'] = code1
data1['audioConfig'] = {}
data1['audioConfig']['speakingRate'] = 0.8
data1['audioConfig']['audioEncoding'] = 'MP3'
request = collection.synthesize(body=data1)
response = request.execute()
audio_pause = base64.b64decode(response['audioContent'].decode('UTF-8'))
raw_pause = response['audioContent']
ssmlLine = '<speak>' + text1 + '</speak>'
data1 = {}
data1['input'] = {}
data1['input']['ssml'] = ssmlLine
data1['voice'] = {}
data1['voice']['ssmlGender'] = 'FEMALE'
data1['voice']['languageCode'] = code1
data1['audioConfig'] = {}
data1['audioConfig']['speakingRate'] = 0.8
data1['audioConfig']['audioEncoding'] = 'MP3'
request = collection.synthesize(body=data1)
response = request.execute()
# The response's audio_content is binary.
with open('output1.mp3', 'wb') as out:
out.write(base64.b64decode(response['audioContent'].decode('UTF-8')))
print('Audio content written to file "output1.mp3"')
audio_text1 = base64.b64decode(response['audioContent'].decode('UTF-8'))
raw_text1 = response['audioContent']
ssmlLine = '<speak>' + text2 + '</speak>'
data2 = {}
data2['input'] = {}
data2['input']['ssml'] = ssmlLine
data2['voice'] = {}
data2['voice']['ssmlGender'] = 'MALE'
data2['voice']['languageCode'] = code2 #'ko-KR'
data2['audioConfig'] = {}
data2['audioConfig']['speakingRate'] = 0.8
data2['audioConfig']['audioEncoding'] = 'MP3'
request = collection.synthesize(body=data2)
response = request.execute()
# The response's audio_content is binary.
with open('output2.mp3', 'wb') as out:
out.write(base64.b64decode(response['audioContent'].decode('UTF-8')))
print('Audio content written to file "output2.mp3"')
audio_text2 = base64.b64decode(response['audioContent'].decode('UTF-8'))
raw_text2 = response['audioContent']
result = audio_text1 + audio_pause + audio_text2
with open('result.mp3', 'wb') as out:
out.write(result)
print('Audio content written to file "result.mp3"')
raw_result = raw_text1 + raw_pause + raw_text2
with open('raw_result.mp3', 'wb') as out:
out.write(base64.b64decode(raw_result.decode('UTF-8')))
print('Audio content written to file "raw_result.mp3"')
# [END tts_synthesize_text_file]ls
if __name__ == '__main__':
parser = argparse.ArgumentParser(
description=__doc__,
formatter_class=argparse.RawDescriptionHelpFormatter)
parser.add_argument('--t1')
parser.add_argument('--code1')
parser.add_argument('--t2')
parser.add_argument('--code2')
args = parser.parse_args()
synthesize_text_file(args.t1, args.t2, args.code1, args.code2)
You can find the answer here:
https://issuetracker.google.com/issues/120687867
Short answer: It's not clear why it is not working, but Google suggests a workaround to first write the files as .wav, combine and then re-encode the result to mp3.
I have managed to do this in NodeJS with just one function (idk how optimal is it, but at least it works). Maybe you could take inspiration from it
I have used memory-streams dependency from npm
var streams = require('memory-streams');
function mergeAudios(audios) {
var reader = new streams.ReadableStream();
var writer = new streams.WritableStream();
audios.forEach(element => {
if (element instanceof streams.ReadableStream) {
element.pipe(writer)
}
else {
writer.write(element)
}
});
reader.append(writer.toBuffer())
return reader
}
Input parameter is a list which contain ReadableStream or responce.audioContent from synthesizeSpeech operation. If it is readablestream, it uses pipe operation, if it is audiocontent, it uses write method. At the end all content is passed into an readabblestream.
Is there a way to color console.log messages in WebStorm like dev tools?
see image
Yes. You could do something like:
console.log('\x1b[36m%s\x1b[0m', 'I am cyan'); //cyan
%s is where in the string gets injected.
Colors reference
Reset = "\x1b[0m"
Bright = "\x1b[1m"
Dim = "\x1b[2m"
Underscore = "\x1b[4m"
Blink = "\x1b[5m"
Reverse = "\x1b[7m"
Hidden = "\x1b[8m"
FgBlack = "\x1b[30m"
FgRed = "\x1b[31m"
FgGreen = "\x1b[32m"
FgYellow = "\x1b[33m"
FgBlue = "\x1b[34m"
FgMagenta = "\x1b[35m"
FgCyan = "\x1b[36m"
FgWhite = "\x1b[37m"
BgBlack = "\x1b[40m"
BgRed = "\x1b[41m"
BgGreen = "\x1b[42m"
BgYellow = "\x1b[43m"
BgBlue = "\x1b[44m"
BgMagenta = "\x1b[45m"
BgCyan = "\x1b[46m"
BgWhite = "\x1b[47m"
Details: https://stackoverflow.com/a/41407246/2589276
No, it's not possible; styling console output is not supported. Please vote for WEB-12349 to be notified on any progress
worked for me like this:
var red = ['color: red'].join(';');
and to output:
console.log("%c I'm RED!",red)
EDIT: Works for me only in Chrome and Firefox
I am trying to match Project name in my query and also trying to print the name of the project associated with each feature record. I know there are plenty of answers but I couldn't find anything that could help me. I am trying to do something like this:
pi_query.type = "portfolioitem"
pi_query.fetch="Name,FormattedID,Owner,c_ScopingTeam,c_AspirationalRelease,c_AssignedProgram,Tags"
#To be configured as per requirement
pi_query.project_scope_up = false
pi_query.project_scope_down = false
pi_query.order = "FormattedID Asc"
pi_query.query_string = "(Project.Name = \"Uni - Serviceability\")"
pi_results = #rally.find(pi_query)
I am trying to match the project name but it simply doesn't work, I also tried printing the name of the project, i tried Project.Name, Project.Values or simply Project. But it doesn't work. I am guessing it is because of my query type which is "portfolioItem" and I can't change my type because I am getting all other attribute values correctly.
Thanks.
Make sure to fetch Project, e.g: feature_query.fetch = "Name,FormattedID,Project"
and this should work:
feature_query.query_string = "(Project.Name = \"My Project\")"
Here is an example where a feature is found by project name.
require 'rally_api'
#Setup custom app information
headers = RallyAPI::CustomHttpHeader.new()
headers.name = "create story in one project, add it to a feature from another project"
headers.vendor = "Nick M RallyLab"
headers.version = "1.0"
# Connection to Rally
config = {:base_url => "https://rally1.rallydev.com/slm"}
config[:username] = "user#co.com"
config[:password] = "secret"
config[:workspace] = "W"
config[:project] = "Product1"
config[:headers] = headers #from RallyAPI::CustomHttpHeader.new()
#rally = RallyAPI::RallyRestJson.new(config)
obj = {}
obj["Name"] = "new story xyz123"
new_s = #rally.create("hierarchicalrequirement", obj)
query = RallyAPI::RallyQuery.new()
query.type = "portfolioitem"
query.fetch = "Name,FormattedID,Project"
query.workspace = {"_ref" => "https://rally1.rallydev.com/slm/webservice/v2.0/workspace/12352608129" }
query.query_string = "(Project.Name = \"Team Group 1\")"
result = #rally.find(query)
feature = result.first
puts feature
field_updates={"PortfolioItem" => feature}
new_s.update(field_updates)