Is it possible to show a root element and its neighbors only without going deeper? I need this because I want that user expands the tree by clicking on nodes, while initially, the user can see only the first level.
I'm going to use cytoscape.js-view-utilities plugin for showing/hiding elements.
I know that there is neighborhood() method, but cannot figure out how to do this
As you said, you can do it by using view-utilities extension. First you should hide all nodes except the root and its neighbors. Then with a tap event on nodes, you can show neighbors of clicked node. In the below example, if you click on node n1 and n2, their neighbors are shown. If you want to differentiate nodes with hidden neighbors, you can assign them a new class and style, and define your tap event on that class.
var cy = window.cy = cytoscape({
container: document.getElementById('cy'),
layout: {name: 'breadthfirst', directed: true},
style: [{
selector: 'node',
css: {
'label': 'data(id)'
}
}
],
elements: {
nodes: [{
data: {
id: 'n0'
}
},
{
data: {
id: 'n1'
}
},
{
data: {
id: 'n2'
}
},
{
data: {
id: 'n3'
}
},
{
data: {
id: 'n4'
}
},
{
data: {
id: 'n5'
}
},
{
data: {
id: 'n6'
}
}
],
edges: [{
data: {
id: 'n0n1',
source: 'n0',
target: 'n1',
}
},
{
data: {
id: 'n0n2',
source: 'n0',
target: 'n2'
}
},
{
data: {
id: 'n1n3',
source: 'n1',
target: 'n3'
}
},
{
data: {
id: 'n1n4',
source: 'n1',
target: 'n4'
}
},
{
data: {
id: 'n2n5',
source: 'n2',
target: 'n5'
}
},
{
data: {
id: 'n2n6',
source: 'n2',
target: 'n6'
}
}
]
}
});
var instance = cy.viewUtilities();
instance.hide(cy.elements().difference(cy.getElementById('n0').closedNeighborhood()));
cy.on('tap', 'node', function(event){
instance.show(event.target.neighborhood());
});
body {
font: 14px helvetica neue, helvetica, arial, sans-serif;
}
#button {
z-index = 1000;
}
#cy {
height: 95%;
width: 95%;
left: 0;
top: 50;
z-index = 900;
position: absolute;
}
<html>
<head>
<meta charset=utf-8 />
<meta name="viewport" content="user-scalable=no, initial-scale=1.0, minimum-scale=1.0, maximum-scale=1.0, minimal-ui">
<script src="https://unpkg.com/cytoscape/dist/cytoscape.min.js">
</script>
<script src="https://unpkg.com/cytoscape-view-utilities/cytoscape-view-utilities.js"></script>
</head>
<body>
<div id="cy"></div>
</body>
</html>
Related
Using cytoscape.js, I am setting the style of a node while defining it.
Shortened example below:
window.addEventListener('DOMContentLoaded', function(){
var cy = window.cy = cytoscape({
elements: {
nodes: [
{ data: { id: 'a', name: 'apple' }, style: { 'background-color': 'darkgreen' } },
]
}
});
});
(I have a default style for a node that is a different color)
This works fine, but when I run my code, the browser console shows the following warning:
Setting a `style` bypass at element creation is deprecated
What does it mean and what is the correct (non-deprecated) way to set it?
Thank you in advance!
The correct way of doing this would be to use the cytoscape stylesheet, as can be seen in every example in the docs:
var cy = (window.cy = cytoscape({
container: document.getElementById("cy"),
boxSelectionEnabled: false,
autounselectify: true,
style: [{
selector: "node",
css: {
"label": "data(id)",
"text-valign": "center",
"text-halign": "center",
"background-color": "data(color)"
}
},
{
selector: "edge",
css: {
"line-fill": "radial-gradient",
"line-gradient-stop-colors": "red green blue",
"line-gradient-stop-positions": "25 50 75"
}
}
],
elements: {
nodes: [{
data: {
id: "a",
color: "#2763c4"
}
},
{
data: {
id: "b",
color: "#37a32d"
}
},
{
data: {
id: "c",
color: "#37a32d"
}
}
],
edges: [{
data: {
source: "a",
target: "b"
}
},
{
data: {
source: "a",
target: "c"
}
}
]
},
layout: {
name: "dagre"
}
}));
cy.ready(function() {
cy.dblclick();
});
var nid = 0;
cy.bind('dblclick', function(evt) {
console.log('dblclick');
cy.add({
group: 'nodes',
data: {
id: nid,
faveColor: 'red'
},
position: {
x: evt.x,
y: evt.y
}
});
nid++;
});
cy.bind('click', 'node', function(evt) {
console.log('node clicked: ', evt.target.id());
});
body {
font: 14px helvetica neue, helvetica, arial, sans-serif;
}
#cy {
height: 100%;
width: 100%;
float: right;
position: absolute;
}
<html>
<head>
<meta charset=utf-8 />
<meta name="viewport" content="user-scalable=no, initial-scale=1.0, minimum-scale=1.0, maximum-scale=1.0, minimal-ui">
<script src="https://unpkg.com/cytoscape#3.3.0/dist/cytoscape.min.js">
</script>
<!-- cyposcape dagre -->
<script src="https://unpkg.com/dagre#0.7.4/dist/dagre.js"></script>
<script src="https://cdn.rawgit.com/cytoscape/cytoscape.js-dagre/1.5.0/cytoscape-dagre.js"></script>
<script src="https://unpkg.com/cytoscape-dblclick/dist/index.js"></script>
</head>
<body>
<div id="cy"></div>
</body>
</html>
I initialized the cytoscape like this:
var cy = cytoscape({
container: document.getElementById('cy'),
elements: [
{ data: { id: 'a' } },
{ data: { id: 'b' } },
{ data: { id: 'c' } },
{
data: {
id: 'ab',
source: 'a',
target: 'b'
}
},
{
data: {
id: 'ac',
source: 'a',
target: 'c'
}
}
]
});
Then I added a function which adds a new node whenever the user double clicks on the viewport.
var nid = 1;
document.getElementById("cy").ondblclick = function(e) {
cy.add({ data: { id: nid }, renderedPosition: { x: e.x, y: e.y } });
nid++;
};
Then I wrote this function which should be called whenever user clicks a node. It works whenever user clicks on a node which I added manually when initializing the cytoscape but the problem is its not working for the nodes which user added by double clicking.
cy.$('node').on('click', function (e) {
console.log('node clicked: ', e.target.id());
});
Any idea what am I doing wrong?
I have a working version of your code here:
var cy = (window.cy = cytoscape({
container: document.getElementById("cy"),
boxSelectionEnabled: false,
autounselectify: true,
style: [{
selector: "node",
css: {
"label": "data(id)",
"text-valign": "center",
"text-halign": "center",
"background-color": "data(faveColor)"
}
},
{
selector: "edge",
css: {
"curve-style": "bezier",
"control-point-step-size": 40,
"target-arrow-shape": "triangle"
}
}
],
elements: {
nodes: [{
data: {
id: "a",
faveColor: "#2763c4"
}
},
{
data: {
id: "b",
faveColor: "#37a32d"
}
},
{
data: {
id: "c",
faveColor: "#37a32d"
}
}
],
edges: [{
data: {
source: "a",
target: "b"
}
},
{
data: {
source: "a",
target: "c"
}
}
]
},
layout: {
name: "dagre"
}
}));
cy.ready(function() {
cy.dblclick();
});
var nid = 0;
cy.bind('dblclick', function(evt) {
cy.add({
group: 'nodes',
data: {
id: nid,
faveColor: 'red'
},
position: {
x: evt.x,
y: evt.y
}
});
nid++;
});
cy.bind('click', 'node', function(evt) {
console.log('node clicked: ', evt.target.id());
});
body {
font: 14px helvetica neue, helvetica, arial, sans-serif;
}
#cy {
height: 100%;
width: 100%;
float: right;
position: absolute;
}
<html>
<head>
<meta charset=utf-8 />
<meta name="viewport" content="user-scalable=no, initial-scale=1.0, minimum-scale=1.0, maximum-scale=1.0, minimal-ui">
<script src="https://unpkg.com/cytoscape#3.3.0/dist/cytoscape.min.js">
</script>
<!-- cyposcape dagre -->
<script src="https://unpkg.com/dagre#0.7.4/dist/dagre.js"></script>
<script src="https://cdn.rawgit.com/cytoscape/cytoscape.js-dagre/1.5.0/cytoscape-dagre.js"></script>
<script src="https://unpkg.com/cytoscape-dblclick/dist/index.js"></script>
</head>
<body>
<div id="cy"></div>
</body>
</html>
I used the cy.on()/cy.bind() method, that seems to work with newly added nodes :)
Is it possible to automatically expand the height of the container of a graph, according to the size of the graph?
I want to display lots of graphs of different sizes on a web page, without having to specify the height of each DOM container.
Does it make sense?
Answer:
It is not the best solution to change anything regarding the container of cytoscape.
Alternative for you:
It is far better to work with the padding of the graph in order to display the graph in a dynamic/suitable way. The easiest way to do that, is to add your nodes and run your layout and then, when the layout is loaded, you can call cy.fit(cy.elements(), yourPadding).
In cytoscape, padding is handled exactly the same way as in css, so you just calculate (based on the number of nodes maybe?) the appropriate padding for your graph and fit it to the viewport.
Additionally, you can always wrap things up with a slick ease-in animation to top things off.
Code:
Snippet works when you click on edit the above snippet and run it in the snippet editor, here the function does not work due to the size limitation and I can't be bothered to adjust it without seeing the outcome in the editor.
var cy = (window.cy = cytoscape({
container: document.getElementById("cy"),
boxSelectionEnabled: false,
autounselectify: true,
style: [
{
selector: "node",
css: {
content: "data(id)",
"text-valign": "bottom",
"text-halign": "center",
height: "60px",
width: "60px",
"border-color": "black",
"border-opacity": "1",
"background-image":
"https://farm8.staticflickr.com/7272/7633179468_3e19e45a0c_b.jpg"
}
},
{
selector: "edge",
css: {
"target-arrow-shape": "triangle"
}
},
{
selector: ":selected",
css: {
"background-color": "black",
"line-color": "black",
"target-arrow-color": "black",
"source-arrow-color": "black"
}
}
],
elements: {
nodes: [
{ data: { id: "n0" } },
{ data: { id: "n1" } },
{ data: { id: "n2" } },
{ data: { id: "n3" } },
{ data: { id: "n4" } },
{ data: { id: "n5" } },
{ data: { id: "n6" } },
{ data: { id: "n7" } },
{ data: { id: "n8" } },
{ data: { id: "n9" } },
{ data: { id: "n10" } },
{ data: { id: "n11" } },
{ data: { id: "n12" } },
{ data: { id: "n13" } },
{ data: { id: "n14" } },
{ data: { id: "n15" } },
{ data: { id: "n16" } }
],
edges: [
{ data: { source: "n0", target: "n1" } },
{ data: { source: "n1", target: "n2" } },
{ data: { source: "n1", target: "n3" } },
{ data: { source: "n2", target: "n7" } },
{ data: { source: "n2", target: "n11" } },
{ data: { source: "n2", target: "n16" } },
{ data: { source: "n3", target: "n4" } },
{ data: { source: "n3", target: "n16" } },
{ data: { source: "n4", target: "n5" } },
{ data: { source: "n4", target: "n6" } },
{ data: { source: "n6", target: "n8" } },
{ data: { source: "n8", target: "n9" } },
{ data: { source: "n8", target: "n10" } },
{ data: { source: "n11", target: "n12" } },
{ data: { source: "n12", target: "n13" } },
{ data: { source: "n13", target: "n14" } },
{ data: { source: "n13", target: "n15" } }
]
},
layout: {
name: "dagre",
padding: 5
}
}));
cy.unbind("click");
cy.bind("click", "node", function(event) { // just for demonstration purposes here
var coll = cy.$(event.target).successors(); // get all outgoing nodes
coll = coll.add(event.target); // add their source
var removed = cy.remove(cy.elements().not(coll)); // remove all other elements
var len = cy.nodes().length;
var pad = (len < 10 ? (len < 5 ? (len < 3 ? (len < 2 ? 150 : 100 ) : 75 ) : 50 ) : 25); // custom padding function here
cy.animate({
fit: {
eles: cy.elements(),
padding: pad
}
}, {
duration: 500,
easing: 'ease-in'
});
});
body {
font: 14px helvetica neue, helvetica, arial, sans-serif;
}
#cy {
height: 100%;
width: 100%;
position: absolute;
left: 0;
top: 0;
float: left;
}
<html>
<head>
<meta charset=utf-8 />
<meta name="viewport" content="user-scalable=no, initial-scale=1.0, minimum-scale=1.0, maximum-scale=1.0, minimal-ui">
<script src="https://cdnjs.cloudflare.com/ajax/libs/cytoscape/3.2.17/cytoscape.min.js"></script>
<script src="https://unpkg.com/jquery#3.3.1/dist/jquery.js"></script>
<script src="https://unpkg.com/dagre#0.7.4/dist/dagre.js"></script>
<script src="https://cdn.rawgit.com/cytoscape/cytoscape.js-dagre/1.5.0/cytoscape-dagre.js"></script>
</head>
<body>
<div id="cy"></div>
</body>
</html>
I'm trying to display nodes that have a font icon in the center of the node using 'content' and a text label underneath.
My styling is currently:
{
'selector': 'node[icon]',
'style': {
'content': 'data(icon)',
'font-family': 'Material Icons',
'text-valign': 'center',
'text-halign': 'center'
}
},
{
'selector': 'node[label]',
'style': {
'label': 'data(label)',
'text-valign': 'bottom',
'text-halign': 'center'
}
}
However, this doesn't work as i assume both of the styles is used on one element (the node).
There are a few solutions I've considered, such as:
Putting the label on a parent node
Use Popper.js or similar to show the label
Use a multi-lined label
The first 2 seem 'hacky', and the third could cause a lot of alignment problems. Is there a better solution to this?
I've found a solution using the extension: https://github.com/kaluginserg/cytoscape-node-html-label.
You can create custom HTML labels for nodes which do not interfere with the base Cytoscape labels. An example of using the Material Icons:
// Initialise the HTML Label
this.cy.nodeHtmlLabel([{
query: '.nodeIcon',
halign: 'center',
valign: 'center',
halignBox: 'center',
valignBox: 'center',
tpl: (data) => {
return '<i class="material-icons">' + data.icon + '</i>';
}
}]);
// Add the HTML Label to the node:
const node = {
group: 'nodes',
data: {
id: data.id,
label: data.label,
icon: data.icon
},
classes: 'nodeIcon' // <---- Add the HTML Label class here
};
With the method you can dynamically create nodes with font icons without the need to download a load of images.
You can even add CSS styling to change the colour of the icon:
If you want an icon as the nodes body, you can use it as the background image and define the label like you do:
var cy = window.cy = cytoscape({
container: document.getElementById('cy'),
boxSelectionEnabled: false,
autounselectify: true,
style: [{
selector: 'node',
css: {
'label': 'data(id)',
'text-valign': 'bottom',
'text-halign': 'center',
'height': '60px',
'width': '60px',
'border-color': 'black',
'border-opacity': '1',
'background-image': 'https://farm8.staticflickr.com/7272/7633179468_3e19e45a0c_b.jpg',
"text-background-opacity": 1,
"text-background-color": "lightgray"
}
},
{
selector: ':selected',
css: {
'background-color': 'black',
'line-color': 'black',
'target-arrow-color': 'black',
'source-arrow-color': 'black'
}
}
],
elements: {
nodes: [{
data: {
id: 'n0'
}
},
{
data: {
id: 'n1'
}
},
{
data: {
id: 'n2'
}
},
{
data: {
id: 'n3'
}
},
{
data: {
id: 'n4'
}
},
{
data: {
id: 'n5'
}
},
{
data: {
id: 'n6'
}
},
{
data: {
id: 'n7'
}
},
{
data: {
id: 'n8'
}
},
{
data: {
id: 'n9'
}
},
{
data: {
id: 'n10'
}
},
{
data: {
id: 'n11'
}
},
{
data: {
id: 'n12'
}
},
{
data: {
id: 'n13'
}
},
{
data: {
id: 'n14'
}
},
{
data: {
id: 'n15'
}
},
{
data: {
id: 'n16'
}
}
],
edges: [{
data: {
source: 'n0',
target: 'n1'
}
},
{
data: {
source: 'n1',
target: 'n2'
}
},
{
data: {
source: 'n1',
target: 'n3'
}
},
{
data: {
source: 'n2',
target: 'n7'
}
},
{
data: {
source: 'n2',
target: 'n11'
}
},
{
data: {
source: 'n2',
target: 'n16'
}
},
{
data: {
source: 'n3',
target: 'n4'
}
},
{
data: {
source: 'n3',
target: 'n16'
}
},
{
data: {
source: 'n4',
target: 'n5'
}
},
{
data: {
source: 'n4',
target: 'n6'
}
},
{
data: {
source: 'n6',
target: 'n8'
}
},
{
data: {
source: 'n8',
target: 'n9'
}
},
{
data: {
source: 'n8',
target: 'n10'
}
},
{
data: {
source: 'n11',
target: 'n12'
}
},
{
data: {
source: 'n12',
target: 'n13'
}
},
{
data: {
source: 'n13',
target: 'n14'
}
},
{
data: {
source: 'n13',
target: 'n15'
}
},
]
},
layout: {
name: 'dagre',
padding: 5
}
});
body {
font: 14px helvetica neue, helvetica, arial, sans-serif;
}
#cy {
height: 100%;
width: 75%;
position: absolute;
left: 0;
top: 0;
float: left;
}
<html>
<head>
<meta charset=utf-8 />
<meta name="viewport" content="user-scalable=no, initial-scale=1.0, minimum-scale=1.0, maximum-scale=1.0, minimal-ui">
<script src="https://cdnjs.cloudflare.com/ajax/libs/cytoscape/3.2.17/cytoscape.min.js"></script>
<script src="https://unpkg.com/jquery#3.3.1/dist/jquery.js"></script>
<script src="https://unpkg.com/dagre#0.7.4/dist/dagre.js"></script>
<script src="https://cdn.rawgit.com/cytoscape/cytoscape.js-dagre/1.5.0/cytoscape-dagre.js"></script>
</head>
<body>
<div id="cy"></div>
</body>
</html>
I first create a graph with 100's of connected nodes. After all the nodes have been added I call
cy.layout({name: "dagre"});
Next, I'm creating 5 or so additional connected nodes I call layout on the nodes added but it doesn't lay them out as expected. Instead of being more like a tree all the nodes are in a straight line.
It looks like this:
var collection = cy.collection();
collection.merge(eles);
...
// I merge in another 5 newly created nodes.
// Next I call layout
collection.layout({
name: "dagre", fit: false,
boundingBox: {
x1: mousex - width / 2, y1: mousey - height / 2, x2: mousex + width, y2: mousey + height
},
nodeSep: 30
}).run();
But I expect it to look like the image below.
In order to get it to look like the above, I call layout shown below.
cy.layout({name: "dagre"});
I've looked through all the options for a dagre layout and can't find anything to make it create the tree.
Edit: The dagre layout needs nodes and edges to calculate the right positions for the nodes, the way you use it, dagre thinks you give it 5 seperate nodes, which explains your wrong layout. The mistake lies here:
collection.merge(eles); // here you should add all relevant nodes and edges
End
I have an example for you --->here<---, just copy that and add your real data:
var cy = (window.cy = cytoscape({
container: document.getElementById("cy"),
boxSelectionEnabled: false,
autounselectify: true,
style: [
{
selector: "node",
css: {
content: "data(id)",
"text-valign": "center",
"text-halign": "center",
height: "60px",
width: "100px",
shape: "rectangle",
"background-color": "data(faveColor)"
}
},
{
selector: "edge",
css: {
"curve-style": "bezier",
"control-point-step-size": 40,
"target-arrow-shape": "triangle"
}
}
],
elements: {
nodes: [
{ data: { id: "Top", faveColor: "#2763c4" } },
{ data: { id: "yes", faveColor: "#37a32d" } },
{ data: { id: "no", faveColor: "#2763c4" } },
{ data: { id: "Third", faveColor: "#2763c4" } },
{ data: { id: "Fourth", faveColor: "#56a9f7" } }
],
edges: [
{ data: { source: "Top", target: "yes" } },
{ data: { source: "Top", target: "no" } },
{ data: { source: "no", target: "Third" } },
{ data: { source: "Third", target: "Fourth" } },
{ data: { source: "Fourth", target: "Third" } }
]
},
layout: {
name: "random"
}
}));
cy.ready(function () {
setTimeout(function () {
cy.nodes().layout({ name: 'dagre' }).run(); // this is what you do!!
setTimeout(function () {
cy.elements().layout({ name: 'dagre' }).run(); // this is what you should do!!
},5000);
}, 5000);
});
body {
font: 14px helvetica neue, helvetica, arial, sans-serif;
}
#cy {
height: 100%;
width: 100%;
left: 0;
top: 0;
float: left;
position: absolute;
}
<html>
<head>
<meta charset=utf-8 />
<meta name="viewport" content="user-scalable=no, initial-scale=1.0, minimum-scale=1.0, maximum-scale=1.0, minimal-ui">
<script src="https://cdnjs.cloudflare.com/ajax/libs/cytoscape/3.2.17/cytoscape.min.js">
</script>
<!-- cyposcape dagre -->
<script src="https://unpkg.com/dagre#0.7.4/dist/dagre.js"></script>
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