I have created a table using partition. I tried two ways for my s3 bucket folder as following but both ways I get no records found when I query with where clause containing partition clause.
My S3 bucket looks like following. part*.csv is what I want to query in Athena. There are other folders at same location along side output, within output.
s3://bucket-rootname/ABC-CASE/report/f78dea49-2c3a-481b-a1eb-5169d2a97747/output/part-filename121231.csv
s3://bucket-rootname/XYZ-CASE/report/678d1234-2c3a-481b-a1eb-5169d2a97747/output/part-filename213123.csv
my table looks like following
Version 1:
CREATE EXTERNAL TABLE `mytable_trial1`(
`status` string,
`ref` string)
PARTITIONED BY (
`casename` string,
`id` string)
ROW FORMAT DELIMITED
FIELDS TERMINATED BY ','
LOCATION
's3://bucket-rootname/'
TBLPROPERTIES (
'has_encrypted_data'='false',
'skip.header.line.count'='1')
ALTER TABLE mytable_trial1 add partition (casename="ABC-CASE",id="f78dea49-2c3a-481b-a1eb-5169d2a97747") location "s3://bucket-rootname/casename=ABC-CASE/report/id=f78dea49-2c3a-481b-a1eb-5169d2a97747/output/";
select * from mytable_trial1 where casename='ABC-CASE' and report='report' and id='f78dea49-2c3a-481b-a1eb-5169d2a97747' and foldername='output';
Version 2:
CREATE EXTERNAL TABLE `mytable_trial1`(
`status` string,
`ref` string)
PARTITIONED BY (
`casename` string,
`report` string,
`id` string,
`foldername` string)
ROW FORMAT DELIMITED
FIELDS TERMINATED BY ','
LOCATION
's3://bucket-rootname/'
TBLPROPERTIES (
'has_encrypted_data'='false',
'skip.header.line.count'='1')
ALTER TABLE mytable_trial1 add partition (casename="ABC-CASE",report="report",id="f78dea49-2c3a-481b-a1eb-5169d2a97747",foldername="output") location "s3://bucket-rootname/casename=ABC-CASE/report=report/id=f78dea49-2c3a-481b-a1eb-5169d2a97747/foldername=output/";
select * from mytable_trial1 where casename='ABC-CASE' and id='f78dea49-2c3a-481b-a1eb-5169d2a97747'
Show partitions shows this partition but no records found with where clause.
I worked with the AWS Support and we were able to narrow down the issue. Version 2 was right one to use since it has four partitions like my S3 bucket. Also, the Alter table command had issue with location. I used hive format location which was incorrect since my actual S3 location is not hive format. So correcting the command to following worked for me.
ALTER TABLE mytable_trial1 add partition (casename="ABC-CASE",report="report",id="f78dea49-2c3a-481b-a1eb-5169d2a97747",foldername="output") location "s3://bucket-rootname/ABC-CASE/report/f78dea49-2c3a-481b-a1eb-5169d2a97747/output/";
Preview table now shows my entries.
Related
I am trying to create a table in Athena based on a directory in S3 that looks something like this:
folders/
id=1/
folder1/
folder2/
folder3/
dt=***/
dt=***/
id=2/
...
I want to partition by two columns. One is the id, and on is the dt.
So eventually I want my table to have an id column, and for each id, all of the dt's in its sub-folder folder3. Is there any solution for this that doesn't force me to have a path like this: ...\id=\dt=?
I tried to simply set these two columns in the "partition by" section where the location is the "folders" path, then the table has no data.
I then tried using injection and setting a specific id in a where clause when querying the table, but then the table contains data I don't need, and seems the partition doesn't work as I expected.
Table DDL:
CREATE EXTERNAL TABLE IF NOT EXISTS `database`.`test_table` (
`col1` string,
`col2` string,
) PARTITIONED BY (
id string,
dt string
)
ROW FORMAT SERDE 'org.apache.hadoop.hive.serde2.lazy.LazySimpleSerDe'
WITH SERDEPROPERTIES (
'serialization.format' = ',',
'field.delim' = ','
) LOCATION 's3://folders/'
Appreciate any help!
You can "manually" add the partitions using something like
alter table your_table add if not exists
partition (id=1, dt=0)
location '/id=1/folder3/dt=0/'
partition (id=1, dt=1)
location 'id=1/folder3/dt=1'
...
you can programmatically add all your partitions on s3 this way using the aws cli to list all folders, loop over them and add them to the partition table using a query like the above (see the docs).
An alternative is to use partition projection with custom storage locations, which has the benefit of giving you faster queries and removes the need for manually adding new partitions when new data arrives to S3 (see the partition projection docs, specially the section on custom S3 locations).
So I'm trying to run the following simple query on redshift spectrum:
select * from company.vehicles where vehicle_id is not null
and it return 0 rows(all of the rows in the table are null). However when I run the same query on athena it works fine and return results. Tried msck repair but both athena and redshift are using the same metastore so it shouldn't matter.
I also don't see any errors.
The format of the files is orc.
The create table query is:
CREATE EXTERNAL TABLE 'vehicles'(
'vehicle_id' bigint,
'parent_id' bigint,
'client_id' bigint,
'assets_group' int,
'drivers_group' int)
PARTITIONED BY (
'dt' string,
'datacenter' string)
ROW FORMAT SERDE
'org.apache.hadoop.hive.ql.io.orc.OrcSerde'
STORED AS INPUTFORMAT
'org.apache.hadoop.hive.ql.io.orc.OrcInputFormat'
OUTPUTFORMAT
'org.apache.hadoop.hive.ql.io.orc.OrcOutputFormat'
LOCATION
's3://company-rt-data/metadata/out/vehicles/'
TBLPROPERTIES (
'CrawlerSchemaDeserializerVersion'='1.0',
'CrawlerSchemaSerializerVersion'='1.0',
'classification'='orc',
'compressionType'='none')
Any idea?
How did you create your external table ??
For Spectrum,you have to explicitly set the parameters to treat what should be treated as null
add the parameter 'serialization.null.format'='' in TABLE PROPERTIES so that all columns with '' will be treated as NULL to your external table in spectrum
**
CREATE EXTERNAL TABLE external_schema.your_table_name(
)
row format delimited
fields terminated by ','
stored as textfile
LOCATION [filelocation]
TABLE PROPERTIES('numRows'='100', 'skip.header.line.count'='1','serialization.null.format'='');
**
Alternatively,you can setup the SERDE-PROPERTIES while creating the external table which will automatically recognize NULL values
Eventually it turned out to be a bug in redshift. In order to fix it, we needed to run the following command:
ALTER TABLE table_name SET TABLE properties(‘orc.schema.resolution’=‘position’);
I had a similar problem and found this solution.
In my case I had external tables that were created with Athena pointing to an S3 bucket that contained heavily nested JSON data. To access them with Redshift I used json_serialization_enable to true; before my queries to make the nested JSON columns queryable. This lead to some columns being NULL when the JSON exceeded a size limit, see here:
If the serialization overflows the maximum VARCHAR size of 65535, the cell is set to NULL.
To solve this issue I used Amazon Redshift Spectrum instead of serialization: https://docs.aws.amazon.com/redshift/latest/dg/tutorial-query-nested-data.html.
My data are distributed over multiple directories and multiple tab-separated files within those directories. The general structure looks like this:
s3://bucket_name/directory/{year}{month}/{iso_2}/{year}{month}{day}_table.bcp.gz
where {year} is the 4-digit year, {month} is the 2-digit month, {day} is the 2-digit day and {iso_2} is the ISO2 country code.
How do I set this up as a table in Athena?
Athena uses Hive DDL, so you just need to run a normal Hive create statement:
CREATE EXTERNAL TABLE table_name(
col_1 string,
...
col_n string)
PARTITIONED BY (
year_month string,
iso_2 string)
ROW FORMAT DELIMITED FIELDS TERMINATED BY '\t'
STORED AS TEXTFILE
LOCATION 's3://bucket_name/directory/';
Then register these directories as new partitions to the required table by running MSCK REPAIR TABLE table_name. If this fails for some reason (which it sometimes does in Athena) you'll need to run all the add partition statements for your existing directories:
ALTER TABLE table_name ADD PARTITION
(year_month=201601,iso=US) LOCATION 's3://bucket_name/directory/201601/US/';
ALTER TABLE table_name ADD PARTITION
(year_month=201602,iso=US) LOCATION 's3://bucket_name/directory/201602/US/';
ALTER TABLE table_name ADD PARTITION
(year_month=201601,iso=GB) LOCATION 's3://bucket_name/directory/201601/GB/';
etc.
Let's imagine I store one file per day in a format:
/path/to/files/2016/07/31.csv
/path/to/files/2016/08/01.csv
/path/to/files/2016/08/02.csv
How can I read the files in a single Hive table for a given date range (for example from 2016-06-04 to 2016-08-03)?
Assuming every files follow the same schema, I would then suggest that you store the files with the following naming convention :
/path/to/files/dt=2016-07-31/data.csv
/path/to/files/dt=2016-08-01/data.csv
/path/to/files/dt=2016-08-02/data.csv
You could then create an external table partitioned by dt and pointing to the location /path/to/files/
CREATE EXTERNAL TABLE yourtable(id int, value int)
PARTITIONED BY (dt string)
ROW FORMAT DELIMITED FIELDS TERMINATED BY ','
LOCATION '/path/to/files/'
If you have several partitions and don't want to write alter table yourtable add partition ... queries for each one, you can simply use the repair command that will automatically add partitions.
msck repair table yourtable
You can then simply select data within a date range by specifying the partition range
SELECT * FROM yourtable WHERE dt BETWEEN '2016-06-04' and '2016-08-03'
Without moving your file:
Design your table schema. In hive shell, create the table (partitioned by date)
Loading files into tables
Query with HiveQL ( select * from table where dt between '2016-06-04 ' and '2016-08-03')
Moving your file:
Design your table schema. In hive shell, create the table (partitioned by date)
move /path/to/files/2016/07/31.csv under /dbname.db/tableName/dt=2016-07-31, then you'll have
/dbname.db/tableName/dt=2016-07-31/file1.csv
/dbname.db/tableName/dt=2016-08-01/file1.csv
/dbname.db/tableName/dt=2016-08-02/file1.csv
load partition with
alter table tableName add partition (dt=2016-07-31);
See Add partitions
In Spark-shell, read hive table
/path/to/data/user_info/dt=2016-07-31/0000-0
1.create sql
val sql = "CREATE EXTERNAL TABLE `user_info`( `userid` string, `name` string) PARTITIONED BY ( `dt` string) ROW FORMAT SERDE 'org.apache.hadoop.hive.serde2.lazy.LazySimpleSerDe' STORED AS INPUTFORMAT 'org.apache.hadoop.mapred.TextInputFormat' OUTPUTFORMAT 'org.apache.hadoop.hive.ql.io.HiveIgnoreKeyTextOutputFormat' LOCATION 'hdfs://.../data/user_info'"
2. run it
spark.sql(sql)
3.load data
val rlt= spark.sql("alter table user_info add partition (dt=2016-09-21)")
4.now you can select data from table
val df = spark.sql("select * from user_info")
I'm trying to create a bucket in hive by using following commands:
hive> create table emp( id int, name string, country string)
clustered by( country)
row format delimited
fields terminated by ','
stored as textfile ;
Command is executing successfully: when I load data into this table, it executes successfully and all data is shown when using select * from emp.
However, on HDFS it is only creating one table and only one file is there with all data. That is, there is no folder for specific country records.
First of all, in the DDL statement you have to explicitly mention how many buckets you want.
create table emp( id int, name string, country string)
clustered by( country)
INTO 2 BUCKETS
row format delimited
fields terminated by ','
stored as textfile ;
In the above statement I have mention 2 buckets, similarly you can mention any number you want.
Still you are not done!!
After that, while loading data into the table you also have to mention the below hint to hive.
set hive.enforce.bucketing = true;
That should do it.
After this you should be able to see that number of files created under the table directory is same as the number of buckets mentioned in the DDL statement.
Bucketing doesn't create HDFS folders, rather if you want a separate floder to be created for a country then you should PARTITION.
Please go through hive partitioning and bucketing in detail.