How to run inference using Tensorflow 2.2 pb file? - tensorflow

I followed the website: https://leimao.github.io/blog/Save-Load-Inference-From-TF2-Frozen-Graph/
However, I still do not know how to run inference with frozen_func(see my code below).
Please advise how to run inference using pb file in TensorFlow 2.2. Thanks.
import tensorflow as tf
def wrap_frozen_graph(graph_def, inputs, outputs, print_graph=False):
def _imports_graph_def():
tf.compat.v1.import_graph_def(graph_def, name="")
wrapped_import = tf.compat.v1.wrap_function(_imports_graph_def, [])
import_graph = wrapped_import.graph
print("-" * 50)
print("Frozen model layers: ")
layers = [op.name for op in import_graph.get_operations()]
if print_graph == True:
for layer in layers:
print(layer)
print("-" * 50)
return wrapped_import.prune(
tf.nest.map_structure(import_graph.as_graph_element, inputs),
tf.nest.map_structure(import_graph.as_graph_element, outputs))
# Load frozen graph using TensorFlow 1.x functions
with tf.io.gfile.GFile("/content/drive/My Drive/Model_file/froze_graph.pb", "rb") as f:
graph_def = tf.compat.v1.GraphDef()
loaded = graph_def.ParseFromString(f.read())
# Wrap frozen graph to ConcreteFunctions
frozen_func = wrap_frozen_graph(graph_def=graph_def,
inputs=["wav_data:0"],
outputs=["labels_softmax:0"],
print_graph=True)

You can use tf.graph_util.import_graph_def inside a tf.function to do that. For example, suppose you make a test GraphDef file my_func.pb like this:
import tensorflow as tf
# Test function to make into a GraphDef file
#tf.function
def my_func(x):
return tf.square(x, name='y')
# Get graph
g = my_func.get_concrete_function(tf.TensorSpec(None, tf.float32)).graph
# Write to file
tf.io.write_graph(g, '.', 'my_func.pb', as_text=False)
You can then load it and use it like this:
import tensorflow as tf
from tensorflow.core.framework.graph_pb2 import GraphDef
# Load GraphDef
with open('my_func.pb', 'rb') as f:
gd = GraphDef()
gd.ParseFromString(f.read())
#tf.function
def my_func2(x):
# Ensure the input is a tensor of the right type
x = tf.convert_to_tensor(x, tf.float32)
# Import the graph giving x as input and getting the output y
y = tf.graph_util.import_graph_def(
gd, input_map={'x:0': x}, return_elements=['y:0'])[0]
return y
tf.print(my_func2(2))
# 4

Related

How to load model back from cpkt, .meta, .index and .pb files for Mobilenet v3?

I have downloaded checkpoints along with model for Mobilenet v3. After extraction of rar file, I get two folders and two other files. Directory looks like following
Main Folder
ema (folder)
checkpoint
model-x.data-00000-of-00001
model-x.index
model-x.meta
pristine (folder)
model.ckpt-y.data-00000-of-00001
model.ckpt-y.index
model.ckpt-y.meta
.pb
.tflite
I have tried many codes among which few are below.
import tensorflow as tf
from tensorflow.python.platform import gfile
model_path = "./weights/v3-large-minimalistic_224_1.0_uint8/model.ckpt-3868848"
detection_graph = tf.Graph()
with tf.Session(graph=detection_graph) as sess:
# Load the graph with the trained states
loader = tf.train.import_meta_graph(model_path+'.meta')
loader.restore(sess, model_path)
The above code results in following error
Node {{node batch_processing/distort_image/switch_case/indexed_case}} of type Case has '_lower_using_switch_merge' attr set but it does not support lowering.
I tried following code:
import tensorflow as tf
import sys
sys.path.insert(0, 'models/research/slim')
from nets.mobilenet import mobilenet_v3
tf.reset_default_graph()
file_input = tf.placeholder(tf.string, ())
image = tf.image.decode_jpeg(tf.read_file('test.jpg'))
images = tf.expand_dims(image, 0)
images = tf.cast(images, tf.float32) / 128. - 1
images.set_shape((None, None, None, 3))
images = tf.image.resize_images(images, (224, 224))
model = mobilenet_v3.wrapped_partial(mobilenet_v3.mobilenet,
new_defaults={'scope': 'MobilenetEdgeTPU'},
conv_defs=mobilenet_v3.V3_LARGE_MINIMALISTIC,
depth_multiplier=1.0)
with tf.contrib.slim.arg_scope(mobilenet_v3.training_scope(is_training=False)):
logits, endpoints = model(images)
ema = tf.train.ExponentialMovingAverage(0.999)
vars = ema.variables_to_restore()
print(vars)
with tf.Session() as sess:
tf.train.Saver(vars).restore(sess, './weights/v3-large-minimalistic_224_1.0_uint8/saved_model.pb')
tf.train.Saver().save(sess, './weights/v3-large-minimalistic_224_1.0_uint8/pristine/model.ckpt')
The above code generates following error:
Unable to open table file ./weights/v3-large-minimalistic_224_1.0_uint8/saved_model.pb: Data loss: not an sstable (bad magic number): perhaps your file is in a different file format and you need to use a different restore operator?
[[node save/RestoreV2 (defined at <ipython-input-11-1531bbfd84bb>:29) ]]
How can I load Mobilenet v3 model along with the checkpoints and use it for my data?
try this
with tf.contrib.slim.arg_scope(mobilenet_v3.training_scope(is_training=False)):
logits, endpoints = mobilenet_v3.large_minimalistic(images)
instead of
model = mobilenet_v3.wrapped_partial(mobilenet_v3.mobilenet,
new_defaults={'scope': 'MobilenetEdgeTPU'},
conv_defs=mobilenet_v3.V3_LARGE_MINIMALISTIC,
depth_multiplier=1.0)
with tf.contrib.slim.arg_scope(mobilenet_v3.training_scope(is_training=False)):
logits, endpoints = model(images)

Can I get a Keras model from a .pb file?

I have a ptocolbuffer file for a VGG model.I need to generate the keras model. Can I use the .pb file to generate Keras model so that I can use the Keras features like summary?
I loaded the .pb file in tf and generate model cofigs and layer weights.
import tensorflow as tf
from tensorflow.python.platform import gfile
from tensorflow.python.framework import tensor_util
GRAPH_PB_PATH = './small_vgg_tf_graph.pb'
with tf.Session() as sess:
print("load graph")
with gfile.FastGFile(GRAPH_PB_PATH,'rb') as f:
graph_def = tf.GraphDef()
graph_def.ParseFromString(f.read())
sess.graph.as_default()
tf.import_graph_def(graph_def, name='')
graph_nodes=[n for n in graph_def.node]
names = []
for t in graph_nodes:
names.append(t.name)
with open('names.txt','w') as fh:
for i in names:
fh.write(str(i)+'\n')
weight_nodes = [n for n in graph_def.node if n.op == 'Const']
with open('weights.txt','w') as fh:
for n in weight_nodes:
fh.write("Name of the node - %s" % n.name+'\n')
fh.write("Value - " )
fh.write(str(tensor_util.MakeNdarray(n.attr['value'].tensor))+'\n')
with open('ops.txt','w') as fh:
for op in sess.graph.get_operations():
fh.write(str(op)+'\n')
I want to generate Keras like summary file

Tensorboard embeddings does not display tensors?

Tensorboard provides embedding visualization of tensorflow variables by using tf.train.Saver(). The following is a working example (from this answer)
import os
import tensorflow as tf
from tensorflow.examples.tutorials.mnist import input_data
from tensorflow.contrib.tensorboard.plugins import projector
LOG_DIR = '/tmp/emb_logs/'
metadata = os.path.join(LOG_DIR, 'metadata.tsv')
mnist = input_data.read_data_sets('MNIST_data')
#Variables
images = tf.Variable(mnist.test.images, name='images')
weights=tf.Variable(tf.random_normal([3,3,1,16]))
biases=tf.Variable(tf.zeros([16]))
#Tensor from the variables
x = tf.reshape(images, shape=[-1, 28, 28, 1])
conv_layer=tf.nn.conv2d(x, weights, [1,1,1,1], padding="SAME")
conv_layer=tf.add(conv_layer, biases)
y = tf.reshape(conv_layer, shape=[-1, 28*28*16])
with open(metadata, 'wb') as metadata_file:
for row in mnist.test.labels:
metadata_file.write('%d
' % row)
with tf.Session() as sess:
saver = tf.train.Saver([images])
sess.run(images.initializer)
saver.save(sess, os.path.join(LOG_DIR, 'images.ckpt'))
config = projector.ProjectorConfig()
# One can add multiple embeddings.
embedding = config.embeddings.add()
embedding.tensor_name = images.name
# Link this tensor to its metadata file (e.g. labels).
embedding.metadata_path = metadata
# Saves a config file that TensorBoard will read during startup.
projector.visualize_embeddings(tf.summary.FileWriter(LOG_DIR), config)
How can I visualize embeddings from a tensorflow tensor, like y in the code above?
Simply replacing
saver = tf.train.Saver([images])
with
saver = tf.train.Saver([y])
doesn't work, because of the following error:
474 var = ops.convert_to_tensor(var, as_ref=True)
475 if not BaseSaverBuilder._IsVariable(var):
476 raise TypeError("Variable to save is not a Variable: %s" % var)
477 name = var.op.name
478 if name in names_to_saveables:
TypeError: Variable to save is not a Variable: Tensor("Reshape_11:0", shape=(10000, 12544), dtype=float32)
Does anyone know of an alternative to generate tensorboard embedding visualizations of a tf.tensor?
You could create a new variable you can assign the value of y to.
y_var = tf.Variable(tf.shape(y))
saver = tf.train.Saver([y_var])
assign_op = y_var.assign(y)
...
# Training
sess.run((loss, assign_op))
saver.save(...)
tf.summary.tensor_summary will save a summary for an arbitrary Tensor.

TFSlim - problems loading saved checkpoint for VGG16

(1) I'm trying to fine-tune a VGG-16 network using TFSlim by loading pretrained weights into all layers except thefc8 layer. I achieved this by using the TF-SLIm function as follows:
import tensorflow as tf
import tensorflow.contrib.slim as slim
import tensorflow.contrib.slim.nets as nets
vgg = nets.vgg
# Specify where the Model, trained on ImageNet, was saved.
model_path = 'path/to/vgg_16.ckpt'
# Specify where the new model will live:
log_dir = 'path/to/log/'
images = tf.placeholder(tf.float32, [None, 224, 224, 3])
predictions = vgg.vgg_16(images)
variables_to_restore = slim.get_variables_to_restore(exclude=['fc8'])
restorer = tf.train.Saver(variables_to_restore)
init = tf.initialize_all_variables()
with tf.Session() as sess:
sess.run(init)
restorer.restore(sess,model_path)
print "model restored"
This works fine as long as I do not change the num_classes for the VGG16 model. What I would like to do is to change the num_classes from 1000 to 200. I was under the impression that if I did this modification by defining a new vgg16-modified class that replaces the fc8 to produce 200 outputs, (along with a variables_to_restore = slim.get_variables_to_restore(exclude=['fc8']) that everything will be fine and dandy. However, tensorflow complains of a dimensions mismatch:
InvalidArgumentError (see above for traceback): Assign requires shapes of both tensors to match. lhs shape= [1,1,4096,200] rhs shape= [1,1,4096,1000]
So, how does one really go about doing this ? The documentation for TFSlim is really patchy and there are several versions scattered on Github - so not getting much help there.
You can try using slim's way of restoring — slim.assign_from_checkpoint.
There is related documentation in the slim sources:
https://github.com/tensorflow/tensorflow/blob/129665119ea60640f7ed921f36db9b5c23455224/tensorflow/contrib/slim/python/slim/learning.py
Corresponding part:
*************************************************
* Fine-Tuning Part of a model from a checkpoint *
*************************************************
Rather than initializing all of the weights of a given model, we sometimes
only want to restore some of the weights from a checkpoint. To do this, one
need only filter those variables to initialize as follows:
...
# Create the train_op
train_op = slim.learning.create_train_op(total_loss, optimizer)
checkpoint_path = '/path/to/old_model_checkpoint'
# Specify the variables to restore via a list of inclusion or exclusion
# patterns:
variables_to_restore = slim.get_variables_to_restore(
include=["conv"], exclude=["fc8", "fc9])
# or
variables_to_restore = slim.get_variables_to_restore(exclude=["conv"])
init_assign_op, init_feed_dict = slim.assign_from_checkpoint(
checkpoint_path, variables_to_restore)
# Create an initial assignment function.
def InitAssignFn(sess):
sess.run(init_assign_op, init_feed_dict)
# Run training.
slim.learning.train(train_op, my_log_dir, init_fn=InitAssignFn)
Update
I tried the following:
import tensorflow as tf
import tensorflow.contrib.slim as slim
import tensorflow.contrib.slim.nets as nets
images = tf.placeholder(tf.float32, [None, 224, 224, 3])
predictions = nets.vgg.vgg_16(images)
print [v.name for v in slim.get_variables_to_restore(exclude=['fc8']) ]
And got this output (shortened):
[u'vgg_16/conv1/conv1_1/weights:0',
u'vgg_16/conv1/conv1_1/biases:0',
…
u'vgg_16/fc6/weights:0',
u'vgg_16/fc6/biases:0',
u'vgg_16/fc7/weights:0',
u'vgg_16/fc7/biases:0',
u'vgg_16/fc8/weights:0',
u'vgg_16/fc8/biases:0']
So it looks like you should prefix scope with vgg_16:
print [v.name for v in slim.get_variables_to_restore(exclude=['vgg_16/fc8']) ]
gives (shortened):
[u'vgg_16/conv1/conv1_1/weights:0',
u'vgg_16/conv1/conv1_1/biases:0',
…
u'vgg_16/fc6/weights:0',
u'vgg_16/fc6/biases:0',
u'vgg_16/fc7/weights:0',
u'vgg_16/fc7/biases:0']
Update 2
Complete example that executes without errors (at my system).
import tensorflow as tf
import tensorflow.contrib.slim as slim
import tensorflow.contrib.slim.nets as nets
s = tf.Session(config=tf.ConfigProto(gpu_options={'allow_growth':True}))
images = tf.placeholder(tf.float32, [None, 224, 224, 3])
predictions = nets.vgg.vgg_16(images, 200)
variables_to_restore = slim.get_variables_to_restore(exclude=['vgg_16/fc8'])
init_assign_op, init_feed_dict = slim.assign_from_checkpoint('./vgg16.ckpt', variables_to_restore)
s.run(init_assign_op, init_feed_dict)
In the example above vgg16.ckpt is a checkpoint saved by tf.train.Saver for 1000 classes VGG16 model.
Using this checkpoint with all variables of 200 classes model (including fc8) gives the following error:
init_assign_op, init_feed_dict = slim.assign_from_checkpoint('./vgg16.ckpt', slim.get_variables_to_restore())
---------------------------------------------------------------------------
ValueError Traceback (most recent call last)
1 init_assign_op, init_feed_dict = slim.assign_from_checkpoint(
----> 2 './vgg16.ckpt', slim.get_variables_to_restore())
/usr/local/lib/python2.7/dist-packages/tensorflow/contrib/framework/python/ops/variables.pyc in assign_from_checkpoint(model_path, var_list)
527 assign_ops.append(var.assign(placeholder_value))
528
--> 529 feed_dict[placeholder_value] = var_value.reshape(var.get_shape())
530
531 assign_op = control_flow_ops.group(*assign_ops)
ValueError: total size of new array must be unchanged

Tensorflow inception_v2_resnet inference

With reference to this post:
Using pre-trained inception_resnet_v2 with Tensorflow
i am trying to use the inception_resnet_v2 model to get predictions of images also. Therefore i looked at the snippet and tried to get it running, but it says "input_tensor" is not defined. Is there anything missing in the code mentioned or can anyone get me some hint to get it running / how to define the input_tensor variable?
Here is the snippet again:
import tensorflow as tf
slim = tf.contrib.slim
from PIL import Image
from inception_resnet_v2 import *
import numpy as np
checkpoint_file = 'inception_resnet_v2_2016_08_30.ckpt'
sample_images = ['dog.jpg', 'panda.jpg']
#Load the model
sess = tf.Session()
arg_scope = inception_resnet_v2_arg_scope()
with slim.arg_scope(arg_scope):
logits, end_points = inception_resnet_v2(input_tensor, is_training=False)
saver = tf.train.Saver()
saver.restore(sess, checkpoint_file)
for image in sample_images:
im = Image.open(image).resize((299,299))
im = np.array(im)
im = im.reshape(-1,299,299,3)
predict_values, logit_values = sess.run([end_points['Predictions'],logits], feed_dict={input_tensor: im})
print (np.max(predict_values), np.max(logit_values))
print (np.argmax(predict_values), np.argmax(logit_values))
Thanks
The code snippet appears to lack any definition for input_tensor. Looking at the definition of the inception_resnet_v2() function, the fact that the tensor is used in a feed_dict, and the fact that the size of your image is 299 x 299, you could define input_tensor as follows:
input_tensor = tf.placeholder(tf.float32, [None, 299, 299, 3])