Zooming a pherical projection in matplotlib - matplotlib

I need to display a catalogue of galaxies projected on the sky. Not all the sky is relevant here, so I need to center an zoom on the relevant part. I am OK with more or less any projection, like Lambert, Mollweide, etc. Here are mock data and code sample, using Mollweide:
# Generating mock data
np.random.seed(1234)
(RA,Dec)=(np.random.rand(100)*60 for _ in range(2))
# Creating projection
projection='mollweide'
fig = plt.figure(figsize=(20, 10));
ax = fig.add_subplot(111, projection=projection);
ax.scatter(np.radians(RA),np.radians(Dec));
# Creating axes
xtick_labels = ["$150^{\circ}$", "$120^{\circ}$", "$90^{\circ}$", "$60^{\circ}$", "$30^{\circ}$", "$0^{\circ}$",
"$330^{\circ}$", "$300^{\circ}$", "$270^{\circ}$", "$240^{\circ}$", "$210^{\circ}$"]
labels = ax.set_xticklabels(xtick_labels, fontsize=15);
ytick_labels = ["$-75^{\circ}$", "$-60^{\circ}$", "$-45^{\circ}$", "$-30^{\circ}$", "$-15^{\circ}$",
"$0^{\circ}$","$15^{\circ}$", "$30^{\circ}$", "$45^{\circ}$", "$60^{\circ}$",
"$75^{\circ}$", "$90^{\circ}$"]
ax.set_yticklabels(ytick_labels,fontsize=15);
ax.set_xlabel("RA");
ax.xaxis.label.set_fontsize(20);
ax.set_ylabel("Dec");
ax.yaxis.label.set_fontsize(20);
ax.grid(True);
The result is the following:
I have tried various set_whateverlim, set_extent, clip_box and so on, as well as importing cartopy and passing ccrs.LambertConformal(central_longitude=...,central_latitude=...) as arguments. I was unable to get a result.
Furthermore, I would like to shift RA tick labels down, as they are difficult to read with real data. Unfortunately, ax.tick_params(pad=-5) doesn't do anything.

Related

Plotting xarray.DataArray and Geopandas together - aspect ratio errors

I am trying to create two images side by side: one satellite image alone, and next to it, the same satellite image with outlines of agricultural fields. My raster data "raster_clip" is loaded into rioxarray (original satellite image from NAIP, converted from .sid to .tif), and my vector data "ag_clip" is in geopandas. My code is as follows:
fig, (ax1, ax2) = plt.subplots(ncols = 2, figsize=(14,8))
raster_clip.plot.imshow(ax=ax1)
raster_clip.plot.imshow(ax=ax2)
ag_clip.boundary.plot(ax=ax1, color="yellow")
I can't seem to figure out how to get the y axes in each plot to be the same. When the vector data is excluded, then the two plots end up the same shape and size.
I have tried the following:
Setting sharey=True in the subplots method. Doesn't affect shape of resulting images, just removes the tic labels on the second image.
Setting "aspect='equal'" in the imshow method, leads to an error, which doesn't make sense because the 'aspect' kwarg is listed in the documentation for xarray.plot.imshow.
plt.imshow's 'aspect' kwarg is not available in xarray
Removing the "figsize" variable, doesn't affect the ratio of the two plots.
not entirely related to your question but i've used cartopy before for overlaying a GeoDataFrame to a DataArray
plt.figure(figsize=(16, 8))
ax = plt.subplot(projection=ccrs.PlateCarree())
ds.plot(ax=ax)
gdf.plot(ax=ax)

Is Cartopy capable of plotting georeferenced data from another planet (e.g., Mars, the Moon)?

I'm working with several data sets from the Moon and Mars (topography, crustal thickness) and was wondering if Cartopy can manipulate these data given the reference ellipsoids are different. Do custom ellipsoids need to be created, or are they built in to Cartopy?
I figured out how to do this on my own. Here's the solution I came up with...
Step 1
Import Cartopy...
import cartopy.crs as ccrs
After importing Cartopy and loading your data set, you need to change Cartopy's Globe class such that it does not use the WGS84 ellipse. Simply define new semi-major and semi-minor axes and tell Cartopy to refrain from using a terrestrial ellipse.
img_globe = ccrs.Globe(semimajor_axis = semimajor, semiminor_axis = semiminor, ellipse = None)
Step 2
Next, choose a map projection for plotting and identify your data's format. I decided to plot my data using a Mollweide coordinate system and found my data is defined in the Plate Carree coordinate system. Now we can define the map projection and coordinate system for the data using the new Globe class defined above.
projection = ccrs.Mollweide(globe = img_globe)
data_crs = ccrs.PlateCarree(globe = img_globe)
Step 3
Lastly, plot your data using standard Matplotlib syntax with two important caveats. First create axes that implement the map projection.
fig = plt.figure(figsize = (6,6))
ax = plt.axes(projection = projection)
When plotting the data, you have to inform Matplotlib how your data are formatted using the transform argument.
ax.imshow(data, extent = extent, cmap = 'viridis', transform = data_crs)
The end result looks like this...

Visualizing Data, Tracking Specific SD Values

BLUF: I want to track a specific Std Dev, e.g. 1.0 to 1.25, by color coding it and making a separate KDF or other probability density graph.
What I want to do with this is be able to pick out other Std Dev ranges and get back new graphs that I can turn around and use to predict outcomes in that specific Std Dev.
Data: https://www.dropbox.com/s/y78pynq9onyw9iu/Data.csv?dl=0
What I have so far is normalized data that looks like a shotgun blast:
Code used to produce it:
data = pd.read_csv("Data.csv")
sns.jointplot(data.x,data.y, space=0.2, size=10, ratio=2, kind="reg");
What I want to achieve here looks like what I have marked up below:
I kind of know how to do this in RStudio using RidgePlot-type functions, but I'm at a loss here in Python, even while using Seaborn. Any/All help appreciated!
The following code might point you in the right directly, you can tweak the appearance of the plot as you please from there.
tips = sns.load_dataset("tips")
g = sns.jointplot(x="total_bill", y="tip", data=tips)
top_lim = 4
bottom_lim = 2
temp = tips.loc[(tips.tip>=bottom_lim)&(tips.tip<top_lim)]
g.ax_joint.axhline(top_lim, c='k', lw=2)
g.ax_joint.axhline(bottom_lim, c='k', lw=2)
# we have to create a secondary y-axis to the joint-plot, otherwise the
# kde might be very small compared to the scale of the original y-axis
ax_joint_2 = g.ax_joint.twinx()
sns.kdeplot(temp.total_bill, shade=True, color='red', ax=ax_joint_2, legend=False)
ax_joint_2.spines['right'].set_visible(False)
ax_joint_2.spines['top'].set_visible(False)
ax_joint_2.yaxis.set_visible(False)

change matplotlib data in gui

I've developed an gui with python pyqt. There I have a matplotlib figure with x,y-Data and vlines that needs to change dynamically with a QSlider.
Right now I change the data just with deleting everything and plot again but this is not effective
This is how I do it:
def update_verticalLines(self, Data, xData, valueSlider1, valueSlider2, PlotNr, width_wg):
if PlotNr == 2:
self.axes.cla()
self.axes.plot(xData, Data, color='b', linewidth=2)
self.axes.vlines(valueSlider1,min(Data),max(Data),color='r',linewidth=1.5, zorder = 4)
self.axes.vlines(valueSlider2,min(Data),max(Data),color='r',linewidth=1.5, zorder = 4)
self.axes.text(1,0.8*max(Data),str(np.round(width_wg,2))+u"µm", fontsize=16, bbox=dict(facecolor='m', alpha=0.5))
self.axes.text(1,0.6*max(Data),"Pos1: "+str(round(valueSlider1,2))+u"µm", fontsize=16, bbox=dict(facecolor='m', alpha=0.5))
self.axes.text(1,0.4*max(Data),"Pos2: "+str(round(valueSlider2,2))+u"µm", fontsize=16, bbox=dict(facecolor='m', alpha=0.5))
self.axes.grid(True)
self.draw()
"vlines" are LineCollections in matplotlib. I searched in the documentation but could not find any hint to a function like 'set_xdata' How can I change the x value of vertical lines when they are already drawn and embedded into FigureCanvas?
I have the same problem with changing the x and y data. When trying the known functions of matplotlib like 'set_data', I get an error that AxisSubPlot does not have this attribute.
In the following is my code for the FigureCanvas Class. The def update_verticalLines should only contain commands for changing the x coord of the vlines and not complete redraw.
Edit: solution
Thanks #Craigular Joe
This was not exactly how it worked for me. I needed to change something:
def update_verticalLines(self, Data, xData, valueSlider1, valueSlider2, PlotNr, width_wg):
self.vLine1.remove()
self.vLine1 = self.axes.vlines(valueSlider1,min(Data), max(Data), color='g', linewidth=1.5, zorder = 4)
self.vLine2.remove()
self.vLine2 = self.axes.vlines(valueSlider2,min(Data), max(Data), color='g', linewidth=1.5, zorder = 4)
self.axes.draw_artist(self.vLine1)
self.axes.draw_artist(self.vLine2)
#self.update()
#self.flush_events()
self.draw()
update() did not work without draw(). (The old vlines stayed)
flush_events() did some crazy stuff. I have two instances of FigureCanvas. flush_events() caused that within the second instance call the vlines moved with the slider but moved then back to the start position.
When you create the vlines, save a reference to them, e.g.
self.my_vlines = self.axes.vlines(...)
so that when you want to change them, you can just remove and replace them, e.g.
self.my_vlines.remove()
self.my_vlines = self.axes.vlines(...)
# Redraw vline
self.axes.draw_artist(self.my_vlines)
# Add newly-rendered lines to drawing backend
self.update()
# Flush GUI events for figure
self.flush_events()
By the way, in the future you should try your best to pare down your code sample to just the essential parts. Having a lot of unnecessary sample code makes it hard to understand your question. :)

Add a new axis to the right/left/top-right of an axis

How do you add an axis to the outside of another axis, keeping it within the figure as a whole? legend and colorbar both have this capability, but implemented in rather complicated (and for me, hard to reproduce) ways.
You can use the subplots command to achieve this, this can be as simple as py.subplot(2,2,1) where the first two numbers describe the geometry of the plots (2x2) and the third is the current plot number. In general it is better to be explicit as in the following example
import pylab as py
# Make some data
x = py.linspace(0,10,1000)
cos_x = py.cos(x)
sin_x = py.sin(x)
# Initiate a figure, there are other options in addition to figsize
fig = py.figure(figsize=(6,6))
# Plot the first set of data on ax1
ax1 = fig.add_subplot(2,1,1)
ax1.plot(x,sin_x)
# Plot the second set of data on ax2
ax2 = fig.add_subplot(2,1,2)
ax2.plot(x,cos_x)
# This final line can be used to adjust the subplots, if uncommentted it will remove all white space
#fig.subplots_adjust(left=0.13, right=0.9, top=0.9, bottom=0.12,hspace=0.0,wspace=0.0)
Notice that this means things like py.xlabel may not work as expected since you have two axis. Instead you need to specify ax1.set_xlabel("..") this makes the code easier to read.
More examples can be found here.