Why is Google colab TPU slow? - tensorflow

Question

I'm using Talos to run hyperparameter tuning of a Keras model. Running this short code on Google colab TPU is very slow. I think it has something to do with the type of data. Should I convert it to tensors to make the TPU faster?
%tensorflow_version 2.x
import os
import tensorflow as tf
import talos as ta
from tensorflow.keras.models import Sequential
from tensorflow.keras.layers import Dense
from tensorflow.keras.optimizers import Adam
from sklearn.model_selection import train_test_split
def iris_model(x_train, y_train, x_val, y_val, params):
# Specify a distributed strategy to use TPU
resolver = tf.distribute.cluster_resolver.TPUClusterResolver(tpu='grpc://' + os.environ['COLAB_TPU_ADDR'])
tf.config.experimental_connect_to_host(resolver.master())
tf.tpu.experimental.initialize_tpu_system(resolver)
strategy = tf.distribute.experimental.TPUStrategy(resolver)
# Use the strategy to create and compile a Keras model
with strategy.scope():
model = Sequential()
model.add(Dense(32, input_shape=(4,), activation=tf.nn.relu, name="relu"))
model.add(Dense(3, activation=tf.nn.softmax, name="softmax"))
model.compile(optimizer=Adam(learning_rate=0.1), loss=params['losses'])
# Convert data type to use TPU
x_train = x_train.astype('float32')
x_val = x_val.astype('float32')
# Fit the Keras model on the dataset
out = model.fit(x_train, y_train, batch_size=params['batch_size'], epochs=params['epochs'], validation_data=[x_val, y_val], verbose=0, steps_per_epoch=0)
return out, model
# Load dataset
X, y = ta.templates.datasets.iris()
# Train and test set
x_train, x_val, y_train, y_val = train_test_split(X, y, test_size=0.30, shuffle=False)
# Create a hyperparameter distributions
p = {'losses': ['logcosh'], 'batch_size': [128, 256, 384, 512, 1024], 'epochs': [10, 20]}
# Use Talos to scan the best hyperparameters of the Keras model
scan_object = ta.Scan(x_train, y_train, params=p, model=iris_model, experiment_name='test', x_val=x_val, y_val=y_val, fraction_limit=0.5)

Answer 1

Thank you for your question.
Unfortunately, I was not able to get your code sample to run on TensorFlow 2.2, so I don't know what performance you were seeing originally. I was able to fix it up and get it running on TPUs with the following changes:
Replace tf.config.experimental_connect_to_host(resolver.master()) with tf.config.experimental_connect_to_cluster(resolver)
Move TPU initialization outside of iris_model().
Use tf.data.Dataset for TPU input.
Here's the modified Colab code:
# Run this to install Talos before running the rest of the code.
!pip install git+https://github.com/autonomio/talos#1.0
%tensorflow_version 2.x
import os
import tensorflow as tf
import talos as ta
from tensorflow.keras.models import Sequential
from tensorflow.keras.layers import Dense
from tensorflow.keras.optimizers import Adam
from sklearn.model_selection import train_test_split
print(tf.__version__) # TF 2.2.0 in my case
resolver = tf.distribute.cluster_resolver.TPUClusterResolver(tpu='grpc://' + os.environ['COLAB_TPU_ADDR'])
tf.config.experimental_connect_to_cluster(resolver)
tf.tpu.experimental.initialize_tpu_system(resolver)
def iris_model(x_train, y_train, x_val, y_val, params):
# Use the strategy to create and compile a Keras model
strategy = tf.distribute.experimental.TPUStrategy(resolver)
with strategy.scope():
model = Sequential()
model.add(Dense(32, input_shape=(4,), activation=tf.nn.relu, name="relu"))
model.add(Dense(3, activation=tf.nn.softmax, name="softmax"))
model.compile(optimizer=Adam(learning_rate=0.1), loss=params['losses'])
train_dataset = tf.data.Dataset.from_tensor_slices((x_train, y_train)).batch(params['batch_size'])
val_dataset = tf.data.Dataset.from_tensor_slices((x_val, y_val)).batch(params['batch_size'])
# Fit the Keras model on the dataset
out = model.fit(train_dataset, epochs=params['epochs'], validation_data=val_dataset)
return out, model
# Load dataset
X, y = ta.templates.datasets.iris()
# Train and test set
x_train, x_val, y_train, y_val = train_test_split(X, y, test_size=0.30, shuffle=False)
# Create a hyperparameter distributions
p = {'losses': ['logcosh'], 'batch_size': [128, 256, 384, 512, 1024], 'epochs': [10, 20]}
# Use Talos to scan the best hyperparameters of the Keras model
scan_object = ta.Scan(x_train, y_train, params=p, model=iris_model, experiment_name='test', x_val=x_val, y_val=y_val, fraction_limit=0.5)
For me, the last call took a little less than 2 minutes.
For well-known datasets, you can skip the step of creating your own tf.data.Dataset by using the TensorFlow Datasets library. TFDS does have the iris dataset in their library. For an end-to-end example of using TFDS with TPUs, see TensorFlow's official TPU guide.