After running below command
!wget -N https://github.com/alicevision/meshroom/releases/download/v2019.2.0/Meshroom-2019.2.0-linux.tar.gz
!mkdir meshroom
!tar xzf Meshroom-2019.2.0-linux.tar.gz -C ./meshroom
I get the below error in google colab please provide an alternative or solution for it.
Meshroom-2019.2.0-l 100%[===================>] 409.38M 14.1MB/s in 32s
2019-12-14 09:50:21 (12.6 MB/s) - ‘Meshroom-2019.2.0-linux.tar.gz’ saved [429271659/429271659]
tar: Meshroom-2019.2.0/qtPlugins/qml/AliceVision/libqtAliceVisionPlugin.so: Cannot create symlink to ‘libqtAliceVisionPlugin.so.0’: Operation not supported
tar: Meshroom-2019.2.0/qtPlugins/qml/AliceVision/libqtAliceVisionPlugin.so.0: Cannot create symlink to ‘libqtAliceVisionPlugin.so.0.1’: Operation not supported
tar: Meshroom-2019.2.0/qtPlugins/qml/AlembicEntity/libalembicEntityQmlPlugin.so: Cannot create symlink to ‘libalembicEntityQmlPlugin.so.0’: Operation not supported
tar: Meshroom-2019.2.0/qtPlugins/qml/AlembicEntity/libalembicEntityQmlPlugin.so.0: Cannot create symlink to ‘libalembicEntityQmlPlugin.so.0.1’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_exportPMVS: Cannot create symlink to ‘aliceVision_exportPMVS-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_cameraInit: Cannot create symlink to ‘aliceVision_cameraInit-2.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_computeStructureFromKnownPoses: Cannot create symlink to ‘aliceVision_computeStructureFromKnownPoses-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_convertLDRToHDR: Cannot create symlink to ‘aliceVision_convertLDRToHDR-0.1’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_globalSfM: Cannot create symlink to ‘aliceVision_globalSfM-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_utils_sfmLocalization: Cannot create symlink to ‘aliceVision_utils_sfmLocalization-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_meshFiltering: Cannot create symlink to ‘aliceVision_meshFiltering-3.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_cameraCalibration: Cannot create symlink to ‘aliceVision_cameraCalibration-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_utils_sfmTransform: Cannot create symlink to ‘aliceVision_utils_sfmTransform-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_imageMatching: Cannot create symlink to ‘aliceVision_imageMatching-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_utils_sfmColorHarmonize: Cannot create symlink to ‘aliceVision_utils_sfmColorHarmonize-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_exportMVSTexturing: Cannot create symlink to ‘aliceVision_exportMVSTexturing-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_utils_voctreeQueryUtility: Cannot create symlink to ‘aliceVision_utils_voctreeQueryUtility-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_exportTracks: Cannot create symlink to ‘aliceVision_exportTracks-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_rigCalibration: Cannot create symlink to ‘aliceVision_rigCalibration-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_incrementalSfM: Cannot create symlink to ‘aliceVision_incrementalSfM-2.1’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_utils_qualityEvaluation: Cannot create symlink to ‘aliceVision_utils_qualityEvaluation-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_exportMatlab: Cannot create symlink to ‘aliceVision_exportMatlab-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_meshResampling: Cannot create symlink to ‘aliceVision_meshResampling-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_featureMatching: Cannot create symlink to ‘aliceVision_featureMatching-2.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_exportMVE2: Cannot create symlink to ‘aliceVision_exportMVE2-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_utils_frustumFiltering: Cannot create symlink to ‘aliceVision_utils_frustumFiltering-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_meshDecimate: Cannot create symlink to ‘aliceVision_meshDecimate-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_utils_voctreeStatistics: Cannot create symlink to ‘aliceVision_utils_voctreeStatistics-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_convertSfMFormat: Cannot create symlink to ‘aliceVision_convertSfMFormat-2.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_cameraLocalization: Cannot create symlink to ‘aliceVision_cameraLocalization-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_exportMatches: Cannot create symlink to ‘aliceVision_exportMatches-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_depthMapFiltering: Cannot create symlink to ‘aliceVision_depthMapFiltering-2.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_prepareDenseScene: Cannot create symlink to ‘aliceVision_prepareDenseScene-2.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_exportMeshroomMaya: Cannot create symlink to ‘aliceVision_exportMeshroomMaya-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_rigLocalization: Cannot create symlink to ‘aliceVision_rigLocalization-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_utils_split360Images: Cannot create symlink to ‘aliceVision_utils_split360Images-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_exportMeshlab: Cannot create symlink to ‘aliceVision_exportMeshlab-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_utils_sfmAlignment: Cannot create symlink to ‘aliceVision_utils_sfmAlignment-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_exportColoredPointCloud: Cannot create symlink to ‘aliceVision_exportColoredPointCloud-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_utils_voctreeCreation: Cannot create symlink to ‘aliceVision_utils_voctreeCreation-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_texturing: Cannot create symlink to ‘aliceVision_texturing-3.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_exportCameraFrustums: Cannot create symlink to ‘aliceVision_exportCameraFrustums-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_exportAnimatedCamera: Cannot create symlink to ‘aliceVision_exportAnimatedCamera-2.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_meshing: Cannot create symlink to ‘aliceVision_meshing-3.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_utils_rigTransform: Cannot create symlink to ‘aliceVision_utils_rigTransform-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_exportKeypoints: Cannot create symlink to ‘aliceVision_exportKeypoints-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_convertFloatDescriptorToUchar: Cannot create symlink to ‘aliceVision_convertFloatDescriptorToUchar-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_depthMapEstimation: Cannot create symlink to ‘aliceVision_depthMapEstimation-2.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_convertRAW: Cannot create symlink to ‘aliceVision_convertRAW-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_utils_keyframeSelection: Cannot create symlink to ‘aliceVision_utils_keyframeSelection-2.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_meshDenoising: Cannot create symlink to ‘aliceVision_meshDenoising-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/bin/aliceVision_featureExtraction: Cannot create symlink to ‘aliceVision_featureExtraction-1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libgfortran.so.3: Cannot create symlink to ‘libgfortran.so.3.0.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libaliceVision_multiview.so.2: Cannot create symlink to ‘libaliceVision_multiview.so.2.2’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libcolamd.so.2: Cannot create symlink to ‘libcolamd.so.2.9.6’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libgomp.so.1: Cannot create symlink to ‘libgomp.so.1.0.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/liblapack.so.3: Cannot create symlink to ‘liblapack.so.3.8.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libopencv_imgcodecs.so.4.1: Cannot create symlink to ‘libopencv_imgcodecs.so.4.1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libopencv_imgproc.so.4.1: Cannot create symlink to ‘libopencv_imgproc.so.4.1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libaliceVision_gpu.so.2: Cannot create symlink to ‘libaliceVision_gpu.so.2.2’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libceres.so.1: Cannot create symlink to ‘libceres.so.1.14.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libIlmThread-2_3.so.24: Cannot create symlink to ‘libIlmThread-2_3.so.2.3.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libaliceVision_sfmData.so.2: Cannot create symlink to ‘libaliceVision_sfmData.so.2.2’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libaliceVision_matching.so.2: Cannot create symlink to ‘libaliceVision_matching.so.2.2’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libraw_r.so.19: Cannot create symlink to ‘libraw_r.so.19.0.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libaliceVision_kvld.so.2: Cannot create symlink to ‘libaliceVision_kvld.so.2.2’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libIlmImf-2_3.so.24: Cannot create symlink to ‘libIlmImf-2_3.so.2.3.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libcamd.so.2: Cannot create symlink to ‘libcamd.so.2.4.6’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libtiff.so.5: Cannot create symlink to ‘libtiff.so.5.4.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libsuitesparseconfig.so.4: Cannot create symlink to ‘libsuitesparseconfig.so.4.5.6’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libaliceVision_localization.so.2: Cannot create symlink to ‘libaliceVision_localization.so.2.2’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libz.so.1: Cannot create symlink to ‘libz.so.1.2.11’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libAlembic.so.1.7: Cannot create symlink to ‘libAlembic.so.1.7.11’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libaliceVision_numeric.so.2: Cannot create symlink to ‘libaliceVision_numeric.so.2.2’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libopencv_videoio.so.4.1: Cannot create symlink to ‘libopencv_videoio.so.4.1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libHalf-2_3.so.24: Cannot create symlink to ‘libHalf-2_3.so.2.3.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libaliceVision_fuseCut.so.2: Cannot create symlink to ‘libaliceVision_fuseCut.so.2.2’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libaliceVision_lInftyComputerVision.so.2: Cannot create symlink to ‘libaliceVision_lInftyComputerVision.so.2.2’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libaliceVision_sensorDB.so.2: Cannot create symlink to ‘libaliceVision_sensorDB.so.2.2’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libccolamd.so.2: Cannot create symlink to ‘libccolamd.so.2.9.6’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libspqr.so.2: Cannot create symlink to ‘libspqr.so.2.0.8’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libaliceVision_depthMap.so.2: Cannot create symlink to ‘libaliceVision_depthMap.so.2.2’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libopencv_calib3d.so.4.1: Cannot create symlink to ‘libopencv_calib3d.so.4.1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libaliceVision_mvsData.so.2: Cannot create symlink to ‘libaliceVision_mvsData.so.2.2’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libaliceVision_feature.so.2: Cannot create symlink to ‘libaliceVision_feature.so.2.2’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libaliceVision_rig.so.2: Cannot create symlink to ‘libaliceVision_rig.so.2.2’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libaliceVision_colorHarmonization.so.2: Cannot create symlink to ‘libaliceVision_colorHarmonization.so.2.2’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libaliceVision_sfmDataIO.so.2: Cannot create symlink to ‘libaliceVision_sfmDataIO.so.2.2’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libaliceVision_keyframe.so.2: Cannot create symlink to ‘libaliceVision_keyframe.so.2.2’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libopencv_xfeatures2d.so.4.1: Cannot create symlink to ‘libopencv_xfeatures2d.so.4.1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libaliceVision_matchingImageCollection.so.2: Cannot create symlink to ‘libaliceVision_matchingImageCollection.so.2.2’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libaliceVision_calibration.so.2: Cannot create symlink to ‘libaliceVision_calibration.so.2.2’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libjpeg.so.62: Cannot create symlink to ‘libjpeg.so.62.2.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libgeogram.so.1: Cannot create symlink to ‘libgeogram.so.1.6.6’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libblas.so.3: Cannot create symlink to ‘libblas.so.3.8.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libquadmath.so.0: Cannot create symlink to ‘libquadmath.so.0.0.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libIex-2_3.so.24: Cannot create symlink to ‘libIex-2_3.so.2.3.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libaliceVision_sfm.so.2: Cannot create symlink to ‘libaliceVision_sfm.so.2.2’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libpng16.so.16: Cannot create symlink to ‘libpng16.so.16.34.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libcudart.so.7.0: Cannot create symlink to ‘libcudart.so.7.0.28’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libcublas.so.7.0: Cannot create symlink to ‘libcublas.so.7.0.28’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libImath-2_3.so.24: Cannot create symlink to ‘libImath-2_3.so.2.3.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libamd.so.2: Cannot create symlink to ‘libamd.so.2.4.6’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libgeogram_num_3rdparty.so.1: Cannot create symlink to ‘libgeogram_num_3rdparty.so.1.6.6’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libaliceVision_system.so.2: Cannot create symlink to ‘libaliceVision_system.so.2.2’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libaliceVision_mvsUtils.so.2: Cannot create symlink to ‘libaliceVision_mvsUtils.so.2.2’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libopencv_video.so.4.1: Cannot create symlink to ‘libopencv_video.so.4.1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libgeogram_num_3rdparty.so: Cannot create symlink to ‘libgeogram_num_3rdparty.so.1’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libaliceVision_hdr.so.2: Cannot create symlink to ‘libaliceVision_hdr.so.2.2’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libaliceVision_track.so.2: Cannot create symlink to ‘libaliceVision_track.so.2.2’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libopencv_features2d.so.4.1: Cannot create symlink to ‘libopencv_features2d.so.4.1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libcholmod.so.3: Cannot create symlink to ‘libcholmod.so.3.0.11’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libOpenImageIO.so.2.0: Cannot create symlink to ‘libOpenImageIO.so.2.0.10’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libopencv_flann.so.4.1: Cannot create symlink to ‘libopencv_flann.so.4.1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libaliceVision_image.so.2: Cannot create symlink to ‘libaliceVision_image.so.2.2’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libaliceVision_mesh.so.2: Cannot create symlink to ‘libaliceVision_mesh.so.2.2’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libopencv_core.so.4.1: Cannot create symlink to ‘libopencv_core.so.4.1.0’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libaliceVision_dataio.so.2: Cannot create symlink to ‘libaliceVision_dataio.so.2.2’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libaliceVision_voctree.so.2: Cannot create symlink to ‘libaliceVision_voctree.so.2.2’: Operation not supported
tar: Meshroom-2019.2.0/aliceVision/lib/libaliceVision_geometry.so.2: Cannot create symlink to ‘libaliceVision_geometry.so.2.2’: Operation not supported
tar: Exiting with failure status due to previous errors
I tried some possible solutions but here i am directly using my drive to do the task.
I don't know any details like this to eradicate such problems it has taken a lot of time to get my hands overit please look into the error i used the opensource meshroom tool for 3d image but results are not getting out.
I am sorry to write such things but stackoverflow is not allowing me to submit my question as it thinks there are no details here and only the messy code is present which is clueless.
Anyways solution for this please.
Related
I have an error that says:
ln: failed to create symbolic link '/var/run/ovn/openvswitch': File exists
How can I fix this?
I am building my app with parcel after I updated the dependecies:
> parcel build index-prod.html --out-file index.html -d build --no-source-maps --no-cache
/ Building constant.js...EISDIR: illegal operation on a directory, read
EISDIR: illegal operation on a directory, read
- Building constant.js...EISDIR: illegal operation on a directory, read
EISDIR: illegal operation on a directory, read
- Building constant.js...EISDIR: illegal operation on a directory, read
EISDIR: illegal operation on a directory, read
EISDIR: illegal operation on a directory, read
| Building constant.js...EISDIR: illegal operation on a directory, read
EISDIR: illegal operation on a directory, read
EISDIR: illegal operation on a directory, read
EISDIR: illegal operation on a directory, read
- Building constant.js...EISDIR: illegal operation on a directory, read
EISDIR: illegal operation on a directory, read
\ Building constant.js...EISDIR: illegal operation on a directory, read
EISDIR: illegal operation on a directory, read
- Building constant.js...EISDIR: illegal operation on a directory, read
\ Building constant.js...EISDIR: illegal operation on a directory, read
EISDIR: illegal operation on a directory, read
EISDIR: illegal operation on a directory, read
- Building constant.js...EISDIR: illegal operation on a directory, read
EISDIR: illegal operation on a directory, read
| Building constant.js...EISDIR: illegal operation on a directory, read
EISDIR: illegal operation on a directory, read
Some hundreds of similar rows... eventually finished:
√ Built in 680.21s.
As you see it took an eternity to do it. But the build is functional.
Before npm update, it took less than 10s to do it.
What is the problem?
I tried to build a singularity container from Singularity Hub as such:
sudo singularity pull shub://marcc-hpc/pytorch
And I got
ERROR : Called singularity_config_get_value on uninitialized config subsystem.
So, I copy pasted the recipe into a file called 'recipe', and executed
sudo singularity build --sandbox myimage recipe
It hung forever at 33.3% done, as shown here:
Using container recipe deffile: recipe
Sanitizing environment
Adding base Singularity environment to container
tar: ./.exec: implausibly old time stamp -9223372036854775808
tar: ./.run: implausibly old time stamp -9223372036854775808
tar: ./.shell: implausibly old time stamp -9223372036854775808
tar: ./.singularity.d/actions/exec: implausibly old time stamp -9223372036854775808
tar: ./.singularity.d/actions/run: implausibly old time stamp -9223372036854775808
tar: ./.singularity.d/actions/shell: implausibly old time stamp -9223372036854775808
tar: ./.singularity.d/actions/start: implausibly old time stamp -9223372036854775808
tar: ./.singularity.d/actions/test: implausibly old time stamp -9223372036854775808
tar: ./.singularity.d/actions: implausibly old time stamp -9223372036854775808
tar: ./.singularity.d/env/01-base.sh: implausibly old time stamp -9223372036854775808
tar: ./.singularity.d/env/90-environment.sh: implausibly old time stamp -9223372036854775808
tar: ./.singularity.d/env/95-apps.sh: implausibly old time stamp -9223372036854775808
tar: ./.singularity.d/env/99-base.sh: implausibly old time stamp -9223372036854775808
tar: ./.singularity.d/env: implausibly old time stamp -9223372036854775808
tar: ./.singularity.d/libs: implausibly old time stamp -9223372036854775808
tar: ./.singularity.d/runscript: implausibly old time stamp -9223372036854775808
tar: ./.singularity.d/startscript: implausibly old time stamp -9223372036854775808
tar: ./.singularity.d: implausibly old time stamp -9223372036854775808
tar: ./.test: implausibly old time stamp -9223372036854775808
tar: ./dev: implausibly old time stamp -9223372036854775808
tar: ./environment: implausibly old time stamp -9223372036854775808
tar: ./etc/hosts: implausibly old time stamp -9223372036854775808
tar: ./etc/resolv.conf: implausibly old time stamp -9223372036854775808
tar: ./etc: implausibly old time stamp -9223372036854775808
tar: ./home: implausibly old time stamp -9223372036854775808
tar: ./proc: implausibly old time stamp -9223372036854775808
tar: ./root: implausibly old time stamp -9223372036854775808
tar: ./singularity: implausibly old time stamp -9223372036854775808
tar: ./sys: implausibly old time stamp -9223372036854775808
tar: ./tmp: implausibly old time stamp -9223372036854775808
tar: ./var/tmp: implausibly old time stamp -9223372036854775808
tar: ./var: implausibly old time stamp -9223372036854775808
tar: .: implausibly old time stamp -9223372036854775808
Docker image path: index.docker.io/marcchpc/pytorch_cuda9:latest
Cache folder set to /root/.singularity/docker
[7/21] |===========|-----------------------| 33.3%
Then, I figured I'd try to just get the hello world container:
singularity pull --name meatballs.img shub://vsoch/hello-world
...and I got the same error message.
Does anyone know what this error means, and why I can't get this running?
I've found the solution: the singularity version used is too old!
I got this version, which is too old:
$ singularity --version
2.4.2-dist
Download this script with content:
#!/bin/bash
VERSION=2.5.2
wget https://github.com/singularityware/singularity/releases/download/$VERSION/singularity-$VERSION.tar.gz
tar xvf singularity-$VERSION.tar.gz
cd singularity-$VERSION
./configure --prefix=/usr/local
make
sudo make install
calling it:
sudo ./install_singularity
to get to v2.5.2
$ singularity --version
2.5.2-dist
and everything works as expected.
Same problem here. I notice if I run
sudo singularity build hello_world.simg shub://singularityhub/ubuntu
on Travis (see log) everythings works as expected:
Cache folder set to /root/.singularity/shub
Progress |===================================| 100.0%
Building from local image: /root/.singularity/shub/singularityhub-ubuntu-master-latest.simg
Building Singularity image...
Singularity container built: hello_world.simg
Cleaning up...
Running it locally, however, results in different behavior:
richel#sonic:~/GitHubs/singularity_example_1$ sudo singularity build hello_world.simg shub://singularityhub/ubuntu
[sudo] password for richel:
Cache folder set to /root/.singularity/shub
Progress |===================================| 100.0%
ERROR : Called singularity_config_get_value on uninitialized config subsystem
ABORT : Retval = 255
ERROR: Unsupported file type: /root/.singularity/shub/singularityhub-ubuntu-master-latest.simg
Cleaning up...
I know the versions between the one on Travis (2.5.2-HEAD.ddf3e31) and on my local computer (2.4.2-dist) differ, but I think that should be no problem [edit: I was wrong, see answer].
I hope this helps in finding the solution.
OS:
richel#sonic:~/GitHubs/singularity_example_1$ cat /etc/os-release
NAME="Ubuntu"
VERSION="18.04.2 LTS (Bionic Beaver)"
ID=ubuntu
ID_LIKE=debian
PRETTY_NAME="Ubuntu 18.04.2 LTS"
VERSION_ID="18.04"
HOME_URL="https://www.ubuntu.com/"
SUPPORT_URL="https://help.ubuntu.com/"
BUG_REPORT_URL="https://bugs.launchpad.net/ubuntu/"
PRIVACY_POLICY_URL="https://www.ubuntu.com/legal/terms-and-policies/privacy-policy"
VERSION_CODENAME=bionic
UBUNTU_CODENAME=bionic
Hiveserver2 does not start after installing HDP 2.6.4.0-91 using cloudbreak on AWS.
Start the hiveserver2 in the Ambari UI and check the contents of /var/log/hive/hiveserver2.log.
Below is the error log.
Any help would be appreciated.
Contents of hiveserver2.log
2018-03-08 04:41:53,345 WARN [main-EventThread]: server.HiveServer2 (HiveServer2.java:process(343)) - This instance of HiveServer2 has been removed from the list of server instances available for dynamic service discovery. The last client session has ended - will shutdown now.
2018-03-08 04:41:53,347 INFO [main]: zookeeper.ZooKeeper (ZooKeeper.java:close(684)) - Session: 0x16203aad5af0040 closed
2018-03-08 04:41:53,347 INFO [main]: server.HiveServer2 (HiveServer2.java:removeServerInstanceFromZooKeeper(361)) - Server instance removed from ZooKeeper.
2018-03-08 04:41:53,348 INFO [main-EventThread]: server.HiveServer2 (HiveServer2.java:stop(405)) - Shutting down HiveServer2
2018-03-08 04:41:53,348 INFO [main-EventThread]: server.HiveServer2 (HiveServer2.java:removeServerInstanceFromZooKeeper(361)) - Server instance removed from ZooKeeper.
2018-03-08 04:41:53,348 INFO [main-EventThread]: zookeeper.ClientCnxn (ClientCnxn.java:run(524)) - EventThread shut down
2018-03-08 04:41:53,348 WARN [main]: server.HiveServer2 (HiveServer2.java:startHiveServer2(508)) - Error starting HiveServer2 on attempt 1, will retry in 60 seconds
org.apache.tez.dag.api.SessionNotRunning: TezSession has already shutdown. Application application_1520480101488_0046 failed 2 times due to AM Container for appattempt_1520480101488_0046_000002 exited with exitCode: -1000
For more detailed output, check the application tracking page: http://ip-10-0-91-7.ap-northeast-2.compute.internal:8088/cluster/app/application_1520480101488_0046 Then click on links to logs of each attempt.
Diagnostics: ExitCodeException exitCode=2: tar: Removing leading `/' from member names
tar: Skipping to next header
gzip: /hadoopfs/fs1/yarn/nodemanager/filecache/60_tmp/tmp_tez.tar.gz: invalid compressed data--format violated
tar: Exiting with failure status due to previous errors
Failing this attempt. Failing the application.
at org.apache.tez.client.TezClient.waitTillReady(TezClient.java:699)
at org.apache.hadoop.hive.ql.exec.tez.TezSessionState.open(TezSessionState.java:218)
at org.apache.hadoop.hive.ql.exec.tez.TezSessionState.open(TezSessionState.java:116)
at org.apache.hadoop.hive.ql.exec.tez.TezSessionPoolManager.startPool(TezSessionPoolManager.java:76)
at org.apache.hive.service.server.HiveServer2.startHiveServer2(HiveServer2.java:488)
at org.apache.hive.service.server.HiveServer2.access$700(HiveServer2.java:87)
at org.apache.hive.service.server.HiveServer2$StartOptionExecutor.execute(HiveServer2.java:720)
at org.apache.hive.service.server.HiveServer2.main(HiveServer2.java:593)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.hadoop.util.RunJar.run(RunJar.java:233)
at org.apache.hadoop.util.RunJar.main(RunJar.java:148)
I had exactly the same issue with HDP on AWS. FYI, In my case the issue was with HDP version 2.6.4.5-2. I'm going to show how I fixed using this version because it is the latest at this time.
As the error log shows the problem is with tez.tar.gz that is corrupted then YARN is unable to decompress it in the YARN container.
This tez.tar.gz file is copied from the hdfs:///hdp/apps/<hdp_version>/tez/tez.tar.gz.
To reproduce the error and confirm that this file is corrupted, you can run the following command:
sudo su
su hdfs
hdfs dfs -get /hdp/apps/2.6.4.5-2/tez.tar.gz
tar -xvzf tez.tar.gz
You will get the following error:
gzip: stdin: invalid compressed data--format violated
tar: Unexpected EOF in archive
tar: Unexpected EOF in archive
tar: Error is not recoverable: exiting now
The fix is pretty simple, you must just replace the HDFS file with the one that you have on your local file-system running the following command:
hdfs dfs -rm /hdp/apps/2.6.4.5-2/tez/tez.tar.gz
hdfs dfs -put /usr/hdp/current/tez-client/lib/tez.tar.gz /hdp/apps/2.6.4.5-2/tez/tez.tar.gz
Now restart Hive Server 2 service and done!
NOTE: If something similar happens with other services you can do the same thing. Please check the following link that has more details: https://community.hortonworks.com/articles/30096/foxing-broken-targz-and-jar-files-in-hdp-24.html
Hope this helps!
I am trying to put wp-content directory into an archive file named files.tar.gz. I am doing this through putty on the external sever where wordpress is placed.
After command:
tar -zcvf files.tar.gz /public_html/denim4u/wp-content
I receive:
tar: Removing leading `/' from member names
tar:
/public_html/denim4u/wp-content: Cannot stat: No such file or
directory
tar: Exiting with failure status due to previous errors
What am I doing wrong?
According to this error message :
tar: Removing leading `/' from member names
tar: /public_html/denim4u/wp-content: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
The directory you want to compress is not a valid path.
Best regards