conda install in Julia fails because of SSL on windows 10 - ssl

conda install xxx fails with the following error:
SSLError(MaxRetryError('HTTPSConnectionPool(host=\'repo.anaconda.com\',
port=443): Max retries exceeded with url:
/pkgs/main/win-64/current_repodata.json (Caused by
SSLError(SSLError("bad handshake: Error([(\'SSL routines\',
\'tls_process_server_certificate\', \'certificate verify
failed\')])")))'))
Maybe there must be something very subtle causing the trouble in my environment but I really have no idea.
It used to work but after I reinstall Windows 10 image, the issue began to appear.
It is on Windows 10. Conda version is 4.7.12. My .condarc is placed in %USERPROFILE% and looks like:
channels:
- defaults
show_channel_urls: true
allow_other_channels: true
proxy_servers:
https: https://x.x.x.x:8080
ssl_verify: false
All available advice over the Internet for the above error tell that ssl_verify set to false is enough.
Where else should I take a look into?
EDIT:
I found some useful info at:
https://stackoverflow.com/a/56717433/7341479
It solves the issue for running conda install Anaconda Powershell opened in Admin. but it still remains for when I run pkg build PyCall in Julia

Related

Install Julia behind proxy on my linux box

I am trying to install Julia on a linux box which is behind proxy. The installation of julia is quite easy, but the installation of modules is very exhausting.
I tried setting up https_proxy - Failed
sslVerify: false on git level - Failed
JULIA_SSL_NO_VERIFY and other variables like these - Failed.
.curlrc file with insecure in it - Failed.
searched for documentations about the libgit2 and not really helpful documents are available for this on the official page or on the internet.
Really fed up on this. Can someone help me on this please?
Error:
(v1.6) pkg> add IJulia
Installing known registries into ~/.julia
┌ Warning: could not download https://pkg.julialang.org/registries
└ # Pkg.Types /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:997
┌ Warning: could not download https://pkg.julialang.org/registries
└ # Pkg.Types /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:997
Cloning registry from "https://github.com/JuliaRegistries/General.git" ERROR: failed to clone from https://github.com/JuliaRegistries/General.git, error: GitError(Code:ERROR, Class:SSL, SSL error: 0xffff8e00 - SSL - An invalid SSL record was received)

screen fails on NetBSD, reporting "poll: Invalid argument"

I have installed and used screen many times on several different operating systems. Recently I installed it on a NetBSD-8.0 virtual machine.
$ sudo pkgin install screen
calculating dependencies...done.
1 package to install:
screen-4.8.0nb1
0 to refresh, 0 to upgrade, 1 to install
0B to download, 1098K to install
proceed ? [Y/n] Y
installing screen-4.8.0nb1...
screen-4.8.0nb1: setting permissions on /usr/pkg/bin/screen-4.8.0 (o=root, g=wheel, m=4511)
screen-4.8.0nb1: adding /usr/pkg/bin/screen to /etc/shells
screen-4.8.0nb1: registering info file /usr/pkg/info/screen.info
===========================================================================
$NetBSD: MESSAGE,v 1.5 2005/12/28 17:53:24 reed Exp $
[snip]
===========================================================================
pkg_install warnings: 0, errors: 0
reading local summary...
processing local summary...
marking screen-4.8.0nb1 as non auto-removable
However, when I went to use it, I got an immediate failure.
$ uname -mrs
NetBSD 8.0 amd64
$ ls -l /usr/pkg/bin/screen
lrwxr-xr-x 1 root wheel 12 Apr 6 02:50 /usr/pkg/bin/screen -> screen-4.8.0
$ groups
users wheel
$ screen
poll: Invalid argument
This problem persists even when I first remove, then reinstall the screen package. Any suggestions as to what's wrong?
My guess is that the system used to build binary packages for 8.0 (as of the 8.0_2020Q1 pkgsrc release) is no longer quite compatible with the NetBSD-8.0 release. It is likely running on a newer release, inside a chroot(8) sandbox.
I would recommend using NetBSD-9.0 instead, as that is the latest NetBSD release, or NetBSD-8.2, as that is the latest release in the netbsd-8 branch. Using the latest NetBSD and pkgsrc releases provides better coverage against unpatched vulnerabilities.
However, if you want to keep using NetBSD-8.0, you can get a working screen(1) from the 8.0_2019Q4 pkgsrc release. To have pkgin(1) pull from that release, edit the /usr/pkg/etc/pkgin/repositories.conf file to use this repository URL:
http://ftp.NetBSD.org/pub/pkgsrc/packages/NetBSD/amd64/8.0_2019Q4/All
There is currently likely just one line in the file that is not commented out, and it points to a URL with just 8.0 in it (which on the server is a symbolic link to the latest pkgsrc release). Just replace that line, or comment it out and add the above line.
Then remove and re-install screen:
sudo pkgin remove screen && sudo pkgin install screen

How can I solve this problem of installation xampp on fedora?

When I run xampp on fedora this error is showing up on application log
Starting Apache Web Server...
Exit code: 8
Stdout:
apache config test fails, aborting
Stderr:
httpd: Syntax error on line 522 of /opt/lampp/etc/httpd.conf: Syntax error on line 10 of /opt/lampp/etc/extra/httpd-xampp.conf: Cannot load modules/libphp7.so into server: libnsl.so.1: cannot open shared object file: No such file or directory
can anyone tell me how can I solve this?
it seems you're missing libnsl. install it through this command:
sudo dnf install libnsl
In case this doesn't work you can then download it manually:
Visit https://pkgs.org/
In the search box (pkgs.org of course) type libnsl.so.1 and choose the appropriate OS. The version shown might be higher e.g libnsl-2.28-9.fc29.x86_64.rpm, but it doesn't matter, the file needed is also included in this very package.
In the terminal, navigate to the directory where the .rpm was downloaded.
Type the following command to install it:
sudo rpm libnsl-2.XX-X.fc29.x86_64.rpm
Upon completion everything should be working fine.
A quick Google search returns this: https://www.reddit.com/r/Fedora/comments/8hlhlv/xampp_with_fedora_28/
The suggested fix is installing libnsl from this source:
https://www.rpmfind.net/linux/rpm2html/search.php?query=libnsl.so.1%28%29%2864bit%29&submit=Search+...&system=fedora&arch=

QXcbConnection: XCB error: 145 (Unknown) Error message starting Spyder with MobaXTerm Qt5

I'm seeing the following error message when starting Spyder over a remote connection through MobaXTerm:
$ spyder
QXcbConnection: XCB error: 145 (Unknown), sequence: 171, resource id: 0, major code: 139 (Unknown), minor code: 20
Spyder still appears to work normally, but the error message pops up every time. A search on this error blames Qt5 and says there's no fix for X11 connections. I'm using Python 3.5.4, Spyder 3.2.3, and MobaXTerm Personal Edition v10.7 Build 3650 connecting to a system running RHEL 6.6.
How can I avoid the error message?
After trying the methods I could find on various websites:
conda install pyopengl on the base python installation
Adding both from OpenGL import GL and import ctypes; ctypes.CDLL("libGL.so.1", mode=ctypes.RTLD_GLOBAL) to site-packages/spyder/app/start.py
various Qt environment variable settings
EDIT:
I was finally able to stop the error messages by disabling only the "RANDR" MobaXTerm X11 extension:
Interestingly, the MobaXTerm documentation also has this extension disabled in the settings screenshots.
I ran into a similar issue when running rviz for ros2 from the Windows 10 WSL2 Ubuntu 20.10 Terminal with the command:
ros2 launch turtlebot3_bringup rviz2.launch.py
I tried unchecking the RANDR extension in MobaXterm to no effect. I was finally able to resolve the issue and launch rviz after issuing the following command:
export LIBGL_ALWAYS_INDIRECT=0
and then re-issuing the ros2 launch command above.

cloud VM instance broken packages after updating packages to earlier version

I did a apt-get upgrade because the load times of our production server were about 40 seconds. I don't have a snapshot before nor after the upgrade.(Although there is a snapshot of six months old) Load times improved to 15-ish seconds but our erizo service stopped working. Erizo was also running on that instance. Restarting the services didn't help so I tried upgrading the packages to the previous version (https://askubuntu.com/questions/138284/how-to-downgrade-a-package-via-apt-get), just like it was but on almost every package there was an error: the previous package version did not excist.(which is strange, because I copied the output of dpkg -l)
Only a few of them were successfully downgraded but I got a serious error when upgrading e1fslibs to it's previous version.:The following packages have unmet dependencies:
e2fsprogs: PreDepends: e2fslibs
Somehow that messed up initramfs and/or initramfs-tools and now the instance is running but I can't get into it.
Connecting to the instance in google cloud platform :Connecting...
Could not connect, retrying (1/3).
google cloud shell isn't able to gcloud compute ssh : Permission denied (publickey).
using gcloud locally also says Permission denied (publickey).
I checked the following:
There are project public keys defined; there aren't any instance public keys defined or any other metadata ( Google Cloud SSH Keys )
In google cloud platform >> compute engine >> VM instances >> permissions>> I see 'compute' is disabled
verify that the daemon is running by navigating to the serial console output page and looking for output lines prefixed with the accounts-from-metadata: string. If you are using a standard image but you do not see these output prefixes in the serial console output, the daemon might be stopped--> I don't see this so I expect it's NOT running.
check firewall rules:(gcloud compute firewall-rules list)
default-allow-ssh default 0.0.0.0/0 tcp:22 //rule is present
Following packages were upgraded:
apt
apt-transport-https
apt-utils
binutils
cloud-init
cloud-initramfs-growroot
cloud-initramfs-rescuevol
comerr-dev
dosfstools
e2fslibs
e2fsprogs
gce-cloud-config
gce-daemon
gce-imagebundle
gce-startup-scripts
google-cloud-sdk
landscape-client
landscape-common l
ibapt-inst1.4 libapt-pkg4.12
libcomerr2
libss2
libudev0 mountall
nginx
nginx-common
nginx-full
ntp
ntpdate
procps
python-apt
python-apt-common
python-lazr.restfulclient
udev
unattended-upgrades
update-manager-core
upstart
whoopsie
x11-utils
This is get from the serial output ::
- mountall: Event failed
- landscape-client is not configured, please run landscape-config.
What to do next?
Apply a startup script to running instance (following this https://cloud.google.com/compute/docs/startupscript) and try to perform Apt-get upgrade ?
try to create a new public key (again) in google cloud shell to access the instance?
In google cloud shell the first time this file was generated after typing gcloud compute --project "enduring-palace-762" ssh --zone "europe-west1-c" "tta-media-test-2"
WARNING: The private SSH key file for Google Compute Engine does not exist.WARNING: You do not have an SSH key for Google Compute Engine.WARNING: [/usr/bin/ssh-keygen] will be executed to generate a key. This tool needs to create the directory /home/developer/.ssh
the generated public key was stored in /home/developer/.ssh /google_compute_engine.pub I made a copy of that, prepended the username and added the content of the public key to compute engine >> metadata>>ssh keys. *key is accepted but the username doesn't show like it does with all the other username - key pairs
I get Permission denied (publickey) error though when using gcloud compute ssh tta-media-test-2 --zone europe-west1-c
When I provide the ssh key file like this
gcloud compute ssh tta-media-test-2 --zone europe-west1-c --ssh-key-file=my-ssh-keys_copy.pub (pwd is inside the folder where key file is)
WARNING: The public SSH key file for Google Compute Engine does not exist.
WARNING: You do not have an SSH key for Google Compute Engine.
WARNING: [/usr/bin/ssh-keygen] will be executed to generate a key.
I get same result when i generate a new key with ssh-keygen -t rsa -f my-ssh-keys
Any other possible solution would be much appreciated.
[update] I am able to ssh the 'broken' instance from local using ssh user#externalIpOfInstance My plan is to bring it to a upgraded stable state, create a snapshot and see from there..
sudo apt-get -f install
0 upgraded, 0 newly installed, 0 to remove and 5 not upgraded.
1 not fully installed or removed.
After this operation, 0 B of additional disk space will be used.
Setting up initramfs-tools (0.99ubuntu13.5) ...
update-initramfs: deferring update (trigger activated)
Processing triggers for initramfs-tools ...
update-initramfs: Generating /boot/initrd.img-3.13.0-79-generic
E: /usr/share/initramfs-tools/hooks/fixrtc failed with return 1.
update-initramfs: failed for /boot/initrd.img-3.13.0-79-generic with 1.
dpkg: error processing initramfs-tools (--configure):
subprocess installed post-installation script returned error exit status 1
Errors were encountered while processing:
initramfs-tools
E: Sub-process /usr/bin/dpkg returned an error code (1)
sudo apt-get upgrade
Reading package lists... Done
Building dependency tree
Reading state information... Done
The following packages have been kept back:
google-chrome-stable
The following packages will be upgraded:
comerr-dev libcomerr2 libss2 unattended-upgrades
4 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
1 not fully installed or removed.
Need to get 0 B/188 kB of archives.
After this operation, 4,096 B of additional disk space will be used.
Do you want to continue [Y/n]? y
Preconfiguring packages ...
(Reading database ... 178509 files and directories currently installed.)
Preparing to replace comerr-dev 2.1-1.42-1ubuntu2.2 (using .../comerr-dev_2.1-1.42-1ubuntu2.3_amd64.deb) ...
Unpacking replacement comerr-dev ...
Preparing to replace libcomerr2 1.42-1ubuntu2.2 (using .../libcomerr2_1.42-1ubuntu2.3_amd64.deb) ...
Unpacking replacement libcomerr2 ...
Preparing to replace libss2 1.42-1ubuntu2.2 (using .../libss2_1.42-1ubuntu2.3_amd64.deb) ...
Unpacking replacement libss2 ...
Preparing to replace unattended-upgrades 0.76ubuntu1.1 (using .../unattended-upgrades_0.76ubuntu1.2_all.deb) ...
Unpacking replacement unattended-upgrades ...
Processing triggers for install-info ...
Processing triggers for man-db ...
Processing triggers for ureadahead ...
Setting up initramfs-tools (0.99ubuntu13.5) ...
update-initramfs: deferring update (trigger activated)
Setting up libcomerr2 (1.42-1ubuntu2.3) ...
Setting up comerr-dev (2.1-1.42-1ubuntu2.3) ...
Setting up libss2 (1.42-1ubuntu2.3) ...
Setting up unattended-upgrades (0.76ubuntu1.2) ...
Processing triggers for initramfs-tools ...
update-initramfs: Generating /boot/initrd.img-3.13.0-79-generic
E: /usr/share/initramfs-tools/hooks/fixrtc failed with return 1.
update-initramfs: failed for /boot/initrd.img-3.13.0-79-generic with 1.
dpkg: error processing initramfs-tools (--configure):
subprocess installed post-installation script returned error exit status 1
No apport report written because MaxReports is reached already
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place
Errors were encountered while processing:
initramfs-tools
E: Sub-process /usr/bin/dpkg returned an error code (1)
sudo apt-get remove initramfs-tools-bin
Reading package lists... Done
Building dependency tree
Reading state information... Done
Some packages could not be installed. This may mean that you have
requested an impossible situation or if you are using the unstable
distribution that some required packages have not yet been created
or been moved out of Incoming.
The following information may help to resolve the situation:
The following packages have unmet dependencies:
cron : Depends: adduser but it is not going to be installed
procps : Depends: initscripts
upstart : Depends: initscripts
Depends: mountall
Depends: ifupdown (>= 0.6.10ubuntu5)
E: Error, pkgProblemResolver::Resolve generated breaks, this may be caused by held packages.
what to do here?
If you were able to SSH into the instance using a given SSH key before, the most likely reason it would stop working is if you somehow removed that SSH key or if the SSH daemon wasn't running/was otherwise broken. It appears as though in the downgrade you broke this machine.
Why do you need this particular VM instance? Does it have important data? If so, you can shut it off, mount its disk using a fresh VM instance, and copy that data off.
If it runs a service, you should probably cut over to a new machine: even if you're able to get into the instance, there's no telling what still works and what doesn't.
i'm facing issue in bigbluebutton insatllation
Reading state information...
You might want to run 'apt --fix-broken install' to correct these.
The following packages have unmet dependencies:
bigbluebutton : Depends: bbb-config but it is not going to be installed
gce-compute-image-packages : Depends: google-compute-engine but it is not going to be installed
E: Unmet dependencies. Try 'apt --fix-broken install' with no packages (or specify a solution).