I am trying to create a new field during indexing however the fields become columns instead of values when i try to concat. What am i doing wrong ? I have looked in the docs and seems according ..
Would appreciate some help on this.
e.g.
.csv file
**Header1**, **Header2**
Value1 ,121244
transform.config
[test_transformstanza]
SOURCE_KEY = fields:Header1,Header2
REGEX =^(\w+\s+)(\d+)
FORMAT =
testresult::$1.$2
WRITE_META = true
fields.config
[testresult]
INDEXED = True
The regex is good, creates two groups from the data, but why is it creating a new field instead of assigning the value to result?. If i was to do ... testresult::$1 or testresult::$2 it works fine, but when concatenating it creates multiple headers with the value as headername. Is there an easier way to concat fields , e.g. if you have a csv file with header names can you just not refer to the header names? (i know how to do these using calculated fields but want to do it during indexing)
Thanks
Related
I have a question regarding the templating option for XML in Open Refine. Is it possible to export data from two columns in a nested XML-structure, if both columns contain multiple values, that need to be split first?
Here's an example to illustrate better what I mean. My columns look like this:
Column1
Column2
https://d-nb.info/gnd/119119110;https://d-nb.info/gnd/118529889
Grützner, Eduard von;Elisabeth II., Großbritannien, Königin
https://d-nb.info/gnd/1037554086;https://d-nb.info/gnd/1245873660
Müller, Jakob;Meier, Anina
Each value separated by semicolon in Column1 has a corresponding value in Column2 in the right order and my desired output would look like this:
<rootElement>
<recordRootElement>
...
<edm:Agent rdf:about="https://d-nb.info/gnd/119119110">
<skos:prefLabel xml:lang="zxx">Grützner, Eduard von</skos:prefLabel>
</edm:Agent>
<edm:Agent rdf:about="https://d-nb.info/gnd/118529889">
<skos:prefLabel xml:lang="zxx">Elisabeth II., Großbritannien, Königin</skos:prefLabel>
</edm:Agent>
...
</recordRootElement>
<recordRootElement>
...
<edm:Agent rdf:about="https://d-nb.info/gnd/1037554086">
<skos:prefLabel xml:lang="zxx">Müller, Jakob</skos:prefLabel>
</edm:Agent>
<edm:Agent rdf:about="https://d-nb.info/gnd/1245873660">
<skos:prefLabel xml:lang="zxx">Meier, Anina</skos:prefLabel>
</edm:Agent>
...
</recordRootElement>
<rootElement>
(note: in my initial posting, the position of the root element was not indicated and it looked like this:
<edm:Agent rdf:about="https://d-nb.info/gnd/119119110">
<skos:prefLabel xml:lang="zxx">Grützner, Eduard von</skos:prefLabel>
</edm:Agent>
<edm:Agent rdf:about="https://d-nb.info/gnd/118529889">
<skos:prefLabel xml:lang="zxx">Elisabeth II., Großbritannien, Königin</skos:prefLabel>
</edm:Agent>
)
I managed to split the values separated by ";" for both columns like this
{{forEach(cells["Column1"].value.split(";"),v,"<edm:Agent rdf:about=\""+v+"\">"+"\n"+"</edm:Agent>")}}
{{forEach(cells["Column2"].value.split(";"),v,"<skos:prefLabel xml:lang=\"zxx\">"+v+"</skos:prefLabel>")}}
but I can't find out how to nest the splitted skos:prefLabel into the edm:Agent element. Is that even possible? If not, I would work with seperate columns or another workaround, but I wanted to make sure, if there's a more direct way before.
Thank you!
Kristina
I am going to expand the answer from RolfBly using the Templating Exporter from OpenRefine.
I do have the following assumptions:
There is some other column left of Column1 acting as record identifying column (see first screenshot).
The columns actually have some proper names
The columns URI and Name are the only columns with multiple values. Otherwise we might produce empty XML elements with the following recipe.
We will use the information about records available via GREL to determine whether to write a <recordRootElement> or not.
Recipe:
Split first Name and then URI on the separator ";" via "Edit cells" => "Split multi-valued cells".
Go to "Export" => "Templating..."
In the prefix field use the value
<?xml version="1.0" encoding="utf-8"?>
<rootElement>
Please note that I skipped the namespace imports for edm, skos, rdf and xml.
In the row template field use the value:
{{if(row.index - row.record.fromRowIndex == 0, '<recordRootElement>', '')}}
<edm:Agent rdf:about="{{escape(cells['URI'].value, 'xml')}}">
<skos:prefLabel xml:lang="zxx">{{escape(cells['Name'].value, 'xml')}}</skos:prefLabel>
</edm:Agent>
{{if(row.index - row.record.fromRowIndex == row.record.rowCount - 1, '</recordRootElement>', '')}}
The row separator field should just contain a linebreak.
In the suffix field use the value:
</rootElement>
Disclaimer: If you're keen on using only OpenRefine, this won't be the answer you were hoping for. There may be ways in OR that I don't know of. That said, here's how I would do it.
Edit The trick is to keep URL and literal side by side on one line. b2m's answer below does just that: go from right to left splitting, not from left to right. You can then skip steps 2 and 3, to get the result in the image.
split each column into 2 columns by separator ;. You'll get 4 columns, 1 and 3 belong together, and 2 and 4 belong together. I'm assuming this will be the case consistently in your data.
export 1 and 3 to a file, and export 2 and 4 to another file, of any convenient format, using the custom tabular exporter.
concatenate those two files into one single file using an editor (I use Notepad++), or any other method you may prefer. Several ways to Rome here. Result in OR would be something like this.
You then have all sorts of options to put text strings in front, between and after your two columns.
In OR, you could use transform on column URL to build your XML using the below code
(note the \n for newline, that's probably just a line feed, you may want to use \r\n for carriage return + line feed if you're using Windows).
'<edm:Agent rdf:about="' + value + '">\n<skos:prefLabel xml:lang="zxx">' + cells.Name.value + '</skos:prefLabel>\n</edm:Agent>'
to get your XML in one column, like so
which you can then export using the custom tabular exporter again. Or instead you could use Add column based on this column in a similar manner, if you want to retain your URL column.
You could even do this in the editor without re-importing the file back into OR, but that's beyond the scope of this answer.
I want to create a new DataFrame from another for rows that meet a condition such as:
uk_cities_df['location'] = cities_df['El Tarter'].where(cities_df['AD'] == 'GB')
uk_cities_df[:5]
but the resulting uk_cities_df is returning NaN.
The csv file that I am needing to extract from has no headers so it used the first row values for such. I need to only include rows in uk_cities_df include the ISO code "GB" so "El Tarter" denotes the values for location and "AD" for iso code.
Could you please provide a visual of what uk_cities_df and cities_df look like ?
From what I can gather, I think you might be looking for the .loc operator,
you could try for example :
uk_cities_df['location'] = cities_df.loc[cities_df['AD'] == 'GB']['location']
Also, I did not really get what role 'El Tarter' plays here, maybe you could give more details ?
I'm using spark-core, spark-sql, Spark-hive 2.10(1.6.1), scala-reflect 2.11.2. I'm trying to filter a dataframe created through hive context...
df = hiveCtx.createDataFrame(someRDDRow,
someDF.schema());
One of the column that I'm trying to filter has multiple single quotes in it. My filter query will be something similar to
df = df.filter("not (someOtherColumn= 'someOtherValue' and comment= 'That's Dany's Reply'"));
In my java class where this filter occurs, I tried to replace the String variable for e.g commentValueToFilterOut, which contains the value "That's Dany's Reply" with
commentValueToFilterOut= commentValueToFilterOut.replaceAll("'","\\\\'");
But when apply the filter to the dataframe I'm getting the below error...
java.lang.RuntimeException: [1.103] failure: ``)'' expected but identifier
s found
not (someOtherColumn= 'someOtherValue' and comment= 'That\'s Dany\'s Reply'' )
^
scala.sys.package$.error(package.scala:27)
org.apache.spark.sql.catalyst.SqlParser$.parseExpression(SqlParser.scala:49)
org.apache.spark.sql.DataFrame.filter(DataFrame.scala:768)
Please advise...
We implemented a workaround to overcome this issue.
Workaround:
Create a new column in the dataframe and copy the values from the actual column (which contains special characters in it, that may cause issues (like singe quote)), to the new column without any special characters.
df = df.withColumn("comment_new", functions.regexp_replace(df.col("comment"),"'",""));
Trim out the special characters from the condition and apply the filter.
commentToFilter = "That's Dany's Reply'"
commentToFilter = commentToFilter.replaceAll("'","");
df = df.filter("(someOtherColumn= 'someOtherValue' and comment_new= '"+commentToFilter+"')");
Now, the filter has been applied, you can drop the new column that you created for the sole purpose of filtering and restore it to the original dataframe.
df = df.drop("comment_new");
If you dont wnat to create a new column in the dataframe, you can also replace the special character with some "never-happen" string literal in the same column, for e.g
df = df.withColumn("comment", functions.regexp_replace(df.col("comment"),"'","^^^^"));
and do the same with the string literal that you want to apply against
comment_new commentToFilter = "That's Dany's Reply'"
commentToFilter = commentToFilter.replaceAll("'","^^^^");
df = df.filter("(someOtherColumn= 'someOtherValue' and comment_new= '"+commentToFilter+"')");
Once filtering is done restore the actual value by reverse-applying the string litteral
df = df.withColumn("comment", functions.regexp_replace(df.col("comment"),"^^^^", "'"));
Though It's not answer the actual issue, but someone having the same issue, can try this out as a workaround.
The actual solution could be, use sqlContext (instead of hiveContext) and / or Dataset (instead of dataframe) and / or upgrade to spark hive 2.12.
experts to debate & answer
PS: Thanks to KP, my lead
I have a CSV file with 3 columns: tweetid , tweet, and Userid. However within the tweet column there are comma separated values.
i.e. of 1 row of data:
`396124437168537600`,"I really wish I didn't give up everything I did for you, I'm so mad at my self for even letting it get as far as it did.",savava143
I want to extract all 3 fields individually, but REGEX_EXTRACT is giving me an error with this code:
a = LOAD tweets USING PigStorage(',') AS (f1,f2,f3);
b = FILTER a BY REGEX_EXTRACT(f1,'(.*)\\"(.*)',1);
The error is:
error: Filter's condition must evaluate to boolean.
In the use case shared, reading the data using PigStrorage(',') will result in missing savava143 (last field value)
A = LOAD '/Users/muralirao/learning/pig/a.csv' USING PigStorage(',') AS (f1,f2,f3);
DUMP A;
Output : A : Observe that the last field value is missing.
(396124437168537600,"I really wish I didn't give up everything I did for you, I'm so mad at my self for even letting it get as far as it did.")
For the use case shared, to extract all the values from CSV file with field values having ',' we can use either CSVExcelStorage or CSVLoader.
Approach 1 : Using CSVExcelStorage
Ref : http://pig.apache.org/docs/r0.12.0/api/org/apache/pig/piggybank/storage/CSVExcelStorage.html
Input : a.csv
396124437168537600,"I really wish I didn't give up everything I did for you, I'm so mad at my self for even letting it get as far as it did.",savava143
Pig Script :
REGISTER piggybank.jar;
A = LOAD 'a.csv' USING org.apache.pig.piggybank.storage.CSVExcelStorage() AS (f1,f2,f3);
DUMP A;
Output : A
(396124437168537600,I really wish I didn't give up everything I did for you, I'm so mad at my self for even letting it get as far as it did.,savava143)
Approach 2 : Using CSVLoader
Ref : http://pig.apache.org/docs/r0.9.1/api/org/apache/pig/piggybank/storage/CSVLoader.html
Below script makes use of CSVLoader(), DUMP A will result in the same output seen earlier.
A = LOAD 'a.csv' USING org.apache.pig.piggybank.storage.CSVLoader() AS (f1,f2,f3);
The error is that you do not want to FILTER based on a regex but GENERATE new fields based on a regex. To filter, you need to know if the line have to be filtered, hence the boolean requirement.
Therefore, you have to use :
b = FOREACH a GENERATE REGEX_EXTRACT(FIELD, REGEX, HOW_MANY_GROUPS_TO_RETURN);
However, as #Murali Rao said, your values are not just coma separated but CSV (think how you will handle a coma in tweet : it is not a field separator, just some content).
I have two files.
file A has, 3 columns
Sno,name,age,key,checkvalue
file B has 3 columns
Sno,title,age
I want to merge these two into final file C which has
Sno,name,age,key,checkvalue
I tried renaming "title" to "name" and then I used "Add constants" to add the other two field.
but, when i try to merge these, I get the below error
"
The name of field number 3 is not the same as in the first row received: you're mixing rows with different layout. Field [age String] does not have the same name as field [age String].
"
How to solve this issue.
After getting the input from file B. You use a select values and remove title column. Then you use a Add constants step and add new columns name,key,checkvalue and make Set empty string? to Y. Finally do the join accordingly. So it won't fail since both the files have same number of columns. Hope this helps.
Actually, there was an issue with the fields ... field mismatch. I used "Rename" option and it got fixed.