Does anyone know whether Apache Ctakes can run UMLS without internet connection and whether there is a good Python wrapper around Ctakes ?
You can use cTAKES dictionary creator GUI to create dictionary of your choice and load the script in MySQL DB. This was you dont need internet connection as you will be relying on local database for analysis.
We have used this approach in our development where cTAKES REST service will be talking to our local DB.
Can it? Or should it? Can? yes, source code is available. Should? not if you are in violation of the NLM UMLS license agreement.
This is a partial answer. I have no idea about the Python wrapper.
The UMLS files can be downloaded download here:
https://www.nlm.nih.gov/research/umls/licensedcontent/umlsknowledgesources.html
You need to be a registered UMLS user in order to download the zip file. The MetamorphoSys tool is included in the download. This tool can be used to load the UMLS data files into MySQL, SQL Server, or an Oracle database.
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So, as part of my daily jobs, I have to transfer a one file from our customers server to our internal server and any responses back.
Each customer effectively has one file up and one file down each day.
I have an SFTP server here that I can use and is already used manually for a few sites.
I'm looking to automate as many sites as possible using batch files on a scheduled task.
Initially, I'm looking at automating the internal side of the process.
We simple have a requests folder that needs to import from the SFTP (then delete the original on the SFTP) and a response folder which needs to copy to a 'sent' folder and then export to the SFTP (also, deleteing the original)
On the SFTP server I have a "to site" and "from site" folder. Each file is site specific followed by a variable. So SiteNameImport.<variable> and SiteNameExport.<variable>
EDIT:
I'm asking this as I'm a novice at scripting and basically have no idea what to do.
I've tried reading the automation guide on WinSCP website but a lot of it means nothing to me.
Filezilla doesn't support automation, You're better off with WinSCP. They have some scripting examples here as well as any other information you'll need to build the scripts functionality. You'll just need to add the specifics (Like deleting sent files and so on) CuteFTP is also another solution you can script with but I believe you have to pay for a licence. I suggest VBscript, Examples can be found Here for vbscript.
Does anyone know a SQL query that will purge a MediaWiki database of old revisions? My database has grown out of control, and I need to prune it to make it possible to download and manage.
I don't have shell access so, I need to do this with a SQL query.
I have tried the solution suggested here, but it doesn't work http://www.mediawiki.org/wiki/Extension_talk:SpecialDeleteOldRevisions2#Deleting_only_archived_revisions
Thanks for reading :)
Nicholas
As you, I don't have shell access to my MediaWiki. So I can't do a lot of things like maintenance.
Here is my solution : host your MediaWiki web site on your computer just to do your maintenance tasks
Backup your database
Backup your MediaWiki folder
Setup Apache (the web server) on your computer
Setup MySQL on your computer
Restore your MediaWiki database on your computer
Put your MediWiki folder on the Apache root folder
Finally run the maintenance task you want using shell. I suggest you the deleteOldRevisions script
After that, rebackup the folder and the database and restore them on the remote host
Use the Maintenance extension and run the relevant maintenance scripts with it. Direct database manipulation is pure madness, and using a local LAMP install as suggested by the other answer quite cumbersome.
Shell access is really required to properly run a MediaWiki but this is a common problem, please report your experience with the extension on the talk page or file a bug if you find any.
I'm current using the cartographer plugin, is it possible for the files in cartographer to access my user database and use its methods?
Yes, possible - but very unlikely. Read the code if you're concerned.
I want to upload the file in the Query tool page from my application .
I saved all the SQL scripts in my project's folder i need to upload those scripts 1 by 1 and execute it. For my automation test script
And the file uploading is dependent.
please give me some idea's how to achieve this.
Thanks,
Ashwin
You haven't given enough information for anyone to really help you. Where are you uploading the file to? What approach have you already tried? Why didn't it work?
Assuming the client and the server are remote, you could upload the file using HTTP. There are many HTTP libraries available in Groovy and Java that you could use. Examples include HttpBuilder that could be used on the client-side and Commons FileUpload on the server side.
For executing the SQL, the groovy.sql.Sql class from the standard Groovy libraries should help.
I cannot use the Resource File API from within a file system plugin due to a PlatSec issue:
*PlatSec* ERROR - Capability check failed - Can't load filesystemplugin.PXT because it links to bafl.dll which has the following capabilities missing: TCB
My understanding of the issue is that:
File system plugins are dlls which are executed within the context of the file system process. Therefore all file system plugins must have the TCB PlatSec privilege which in turn means they cannot link against a dll that is not in the TCB.
Is there a way around this (without resorting to a text file or an intermediate server)? I suspect not - but it would be good to get a definitive answer.
The Symbian file server has the following capabilities:
TCB ProtServ DiskAdmin AllFiles PowerMgmt CommDD
So any DLL being loaded into the file server process must have at least these capabilities. There is no way around this, short of writing a new proxy process as you allude to.
However, there is a more fundamental reason why you shouldn't be using bafl.dll from within a fileserver plugin: this DLL provides utility functions which interface to the file servers client API. Attempting to use it from within the filer server will not work; at best, it will lead to the file server deadlocking as it attempts to connect to itself.
I'd suggest rethinking that you're trying to do, and investigating an internal file-server API to achieve it instead.
Using RFs/RFile/RDir APIs from within a file server plugin is not safe and can potentially lead to deadlock if you're not very careful.
Symbian 9.5 will introduce new APIs (RFilePlugin, RFsPlugin and RDirPlugin) which should be used instead.
Theres a proper mechanism for communicating with plugins, RPlugin.
Do not use RFile. I'm not even sure that it would work as the path is checked in Initialise of RFile functions which is called before the plugin stack.
Tell us what kind of data you are storing in the resource file.
Things that usually go into resource files have no place in a file server plugin, even that means hardcoding a few values.
Technically, you can send data to a file server plugin using RFile.Write() but that's not a great solution (intercept RFile.Open("invalid file name that only your plugin understands") in the plugin).
EDIT: Someone indicated that using an invalid file name will not let you send data to the plugin. hey, I didn't like that solution either. for the sake of completness, I should clarify. make up a filename that looks OK enough to go through to your plugin. like using a drive letter that doesn't have a real drive attached to it (but will still be considered correct by filename-parsing code).
Writing code to parse the resource file binary in the plugin, while theoratically possible, isn't a great solution either.