The following code example uses the RectangleSelector widget, so that we should see a continuously updated rectangular patch over the plot. However, nothing can be seen, unless we set useblit=False. What's wrong?
This is with matplotlib 2.2.2 and wxpython 4.0.1 on linux. The tkagg backend works fine.
#!/usr/bin/env python3
import matplotlib
from matplotlib.widgets import RectangleSelector
if __name__ == '__main__':
matplotlib.use('wxagg')
import matplotlib.pyplot as plt
figure = plt.figure()
rect = RectangleSelector(figure.gca(), (lambda e1, e2: print(e1, e2)), useblit=True)
plt.show()
I am assuming you are using Linux. Check following link:
https://github.com/matplotlib/matplotlib/issues/11425
Wayland seems to have a bug when blitting.
Related
I was running seaborn ver. 0.10.1 on my jupyter notebook. This morning I upgraded to the latest version 0.11.0. Now, my kde jointplot doesn't give the color mapping that it used to. The code is the same. Only the versions are different.
import numpy as np
import pandas as pd
import matplotlib.pyplot as plt
import seaborn as sns
%matplotlib notebook
np.random.seed(1234)
v1 = pd.Series(np.random.normal(0,10,1000), name='v1')
v2 = pd.Series(np.random.normal(60,15,1000), name='v2')
v3 = pd.Series(2*v1 + v2, name='v3')
# set the seaborn style for all the following plots
sns.set_style('white')
sns.jointplot(v1, v3, kind='kde', space=0);
The function kdeplot (which is used internally by jointplot()to draw the bivariate density plot) has been extensively changed in v.0.11. See What's new and the documentation.
You now have to pass fill=True to get a filled KDE, and you need to specify thresh=0 if you want to fill the available space with color.
sns.jointplot(x=v1, y=v3, kind='kde', space=0, fill=True, thresh=0, cmap='Blues');
I am new to JupyterLab trying to learn.
When I try to plot a graph, it works fine on jupyter notebook, but does not show the result on jupyterlab. Can anyone help me with this?
Here are the codes below:
import pandas as pd
import pandas_datareader.data as web
import time
# import matplotlib.pyplot as plt
import datetime as dt
import plotly.graph_objects as go
import numpy as np
from matplotlib import style
# from matplotlib.widgets import EllipseSelector
from alpha_vantage.timeseries import TimeSeries
Here is the code for plotting below:
def candlestick(df):
fig = go.Figure(data = [go.Candlestick(x = df["Date"], open = df["Open"], high = df["High"], low = df["Low"], close = df["Close"])])
fig.show()
JupyterLab Result:
Link to the image (JupyterLab)
JupyterNotebook Result:
Link to the image (Jupyter Notebook)
I have updated both JupyterLab and Notebook to the latest version. I do not know what is causing JupyterLab to stop showing the figure.
Thank you for reading my post. Help would be greatly appreciated.
Note*
I did not include the parts for data reading (Stock OHLC values). It contains the API keys. I am sorry for inconvenience.
Also, this is my second post on stack overflow. If this is not a well-written post, I am sorry. I will try to put more effort if it is possible. Thank you again for help.
TL;DR:
run the following and then restart your jupyter lab
jupyter labextension install #jupyterlab/plotly-extension
Start the lab with:
jupyter lab
Test with the following code:
import plotly.graph_objects as go
from alpha_vantage.timeseries import TimeSeries
def candlestick(df):
fig = go.Figure(data = [go.Candlestick(x = df.index, open = df["1. open"], high = df["2. high"], low = df["3. low"], close = df["4. close"])])
fig.show()
# preferable to save your key as an environment variable....
key = # key here
ts = TimeSeries(key = key, output_format = "pandas")
data_av_hist, meta_data_av_hist = ts.get_daily('AAPL')
candlestick(data_av_hist)
Note: Depending on system and installation of JupyterLab versus bare Jupyter, jlab may work instead of jupyter
Longer explanation:
Since this issue is with plotly and not matplotlib, you do NOT have to use the "inline magic" of:
%matplotlib inline
Each extension has to be installed to the jupyter lab, you can see the list with:
jupyter labextension list
For a more verbose explanation on another extension, please see related issue:
jupyterlab interactive plot
Patrick Collins already gave the correct answer.
However, the current JupyterLab might not be supported by the extension, and for various reasons one might not be able to update the JupyterLab:
ValueError: The extension "#jupyterlab/plotly-extension" does not yet support the current version of JupyterLab.
In this condition a quick workaround would be to save the image and show it again:
from IPython.display import Image
fig.write_image("image.png")
Image(filename='image.png')
To get the write_image() method of Plotly to work, kaleido must be installed:
pip install -U kaleido
This is a full example (originally from Plotly) to test this workaround:
import os
import pandas as pd
import plotly.express as px
from IPython.display import Image
df = pd.DataFrame([
dict(Task="Job A", Start='2009-01-01', Finish='2009-02-28', Resource="Alex"),
dict(Task="Job B", Start='2009-03-05', Finish='2009-04-15', Resource="Alex"),
dict(Task="Job C", Start='2009-02-20', Finish='2009-05-30', Resource="Max")
])
fig = px.timeline(df, x_start="Start", x_end="Finish", y="Resource", color="Resource")
if not os.path.exists("images"):
os.mkdir("images")
fig.write_image("images/fig1.png")
Image(filename='images/fig1.png')
I want to use the emoji-font "Symbola.ttf" to label my plots. This does work when I use plt.show(). But it does not work when using the backend_pdf. Only two emojis are shown in a mixed up order.
example images:
when using plt.show():
when using the backend_pdf:
example code:
Here is my code to produce these examples:
import matplotlib.backends.backend_pdf
import matplotlib.pyplot as plt
import emoji
from matplotlib.font_manager import FontProperties
emojis = [emoji.EMOJI_UNICODE[e] for e in list(emoji.EMOJI_UNICODE.keys())[620:630]]
prop = FontProperties(fname='./Symbola.ttf', size=30)
# backend_pdf plot
pdf = matplotlib.backends.backend_pdf.PdfPages("output.pdf")
plt.xticks(range(len(emojis)), emojis, fontproperties=prop)
pdf.savefig()
pdf.close()
# plt.show() plot
plt.xticks(range(len(emojis)), emojis, fontproperties=prop)
plt.show()
I'm running this on a Linux machine.
I think I have found the problem. It seems that my Symbola.ttf was broken. When I use this .ttf file everything works great.
When I run a program with PyCharm, it doesn't display graphs made with Matplotlib. E.g.:
import matplotlib.pyplot as plt
[...]
plt.imshow(montage(W / np.max(W)), cmap='coolwarm')
I tried calling
plt.interactive(False)
first, but it didn't make a difference.
Running the same program with ipython3, the graphs are displayed.
I set a default back-end for my system in matplotlibrc (TkAgg), and that did the trick.
The below code worked for me:
in pycharm-community-2018.2.2
import matplotlib.pyplot as plt
df.boxplot(column='ApplicantIncome')
plt.show()
I need to open a bar charts in Matplotlib in a browser-Like Firefox- but I shouldn't use Bokeh in my Project. Any suggestions?
Use the WebAgg backend, which opens a browser window with the plot and is fully interactive like the Qt or GTK window.
import matplotlib as mpl
mpl.use('WebAgg')
import matplotlib.pyplot as plt
# do your plotting
plt.show()
For example:
>>> import numpy as np
>>> a=np.random.random(100)
>>> b=np.random.random(100)
>>> plt.plot(a,b)
Opens http://127.0.0.1:8988/ showing:
IPython with %matplotlib inline as demonstrated here