I trained a MLP typed neural network for a prediction model. The predicted value is shown as follows. Is that possible to let the predicted value become more sparse.I would like those points corresponding to small peaks (painted with yellow) are enforced to have more smaller values. In other words, I would like this predicted sequence has smaller number of peaks. I can add a threshold to do the similar work. But I prefer to let model learn it automatically. I tried L1 type of activity regularizer. But it did not help a lot.
model= Sequential()
model.add(Conv1D(60,32, strides=1, activation='relu',padding='causal',input_shape=(64,1)))
model.add(Conv1D(80,10, strides=1, activation='relu',padding='causal'))
#model.add(Conv1D(100,5, strides=1, activation='relu',padding='causal'))
model.add(MaxPooling1D(2))
model.add(Dense(300,activity_regularizer=regularizers.l1(0.01),activation='relu'))
model.add(Flatten())
model.add(Dense(1,activation='linear'))
If you think that the smaller peaks are caused by overfitting to the training data, you can try to add a Dropout layer instead of your activity regularizer. For example:
model.add(Dropout(0.2, input_shape=(300,)))
Related
I'm currently trying to train a custom model with tensorflow to detect 17 landmarks/keypoints on each of 2 hands shown in an image (fingertips, first knuckles, bottom knuckles, wrist, and palm), for 34 points (and therefore 68 total values to predict for x & y). However, I cannot get the model to converge, with the output instead being an array of points that are pretty much the same for every prediction.
I started off with a dataset that has images like this:
each annotated to have the red dots correlate to each keypoint. To expand the dataset to try to get a more robust model, I took photos of the hands with various backgrounds, angles, positions, poses, lighting conditions, reflectivity, etc, as exemplified by these further images:
I have about 3000 images created now, with the landmarks stored inside a csv as such:
I have a train-test split of .67 train .33 test, with the images randomly selected to each. I load the images with all 3 color channels, and scale the both the color values & keypoint coordinates between 0 & 1.
I've tried a couple different approaches, each involving a CNN. The first keeps the images as they are, and uses a neural network model built as such:
model = Sequential()
model.add(Conv2D(filters = 64, kernel_size = (3,3), padding = 'same', activation = 'relu', input_shape = (225,400,3)))
model.add(Conv2D(filters = 64, kernel_size = (3,3), padding = 'same', activation = 'relu'))
model.add(MaxPooling2D(pool_size = (2,2), strides = 2))
filters_convs = [(128, 2), (256, 3), (512, 3), (512,3)]
for n_filters, n_convs in filters_convs:
for _ in np.arange(n_convs):
model.add(Conv2D(filters = n_filters, kernel_size = (3,3), padding = 'same', activation = 'relu'))
model.add(MaxPooling2D(pool_size = (2,2), strides = 2))
model.add(Flatten())
model.add(Dense(128, activation="relu"))
model.add(Dense(96, activation="relu"))
model.add(Dense(72, activation="relu"))
model.add(Dense(68, activation="sigmoid"))
opt = Adam(learning_rate=.0001)
model.compile(loss="mse", optimizer=opt, metrics=['mae'])
print(model.summary())
I've modified the various hyperparameters, yet nothing seems to make any noticeable difference.
The other thing I've tried is resizing the images to fit within a 224x224x3 array to use with a VGG-16 network, as such:
vgg = VGG16(weights="imagenet", include_top=False,
input_tensor=Input(shape=(224, 224, 3)))
vgg.trainable = False
flatten = vgg.output
flatten = Flatten()(flatten)
points = Dense(256, activation="relu")(flatten)
points = Dense(128, activation="relu")(points)
points = Dense(96, activation="relu")(points)
points = Dense(68, activation="sigmoid")(points)
model = Model(inputs=vgg.input, outputs=points)
opt = Adam(learning_rate=.0001)
model.compile(loss="mse", optimizer=opt, metrics=['mae'])
print(model.summary())
This model has similar results to the first. No matter what I seem to do, I seem to get the same results, in that my mse loss minimizes around .009, with an mae around .07, no matter how many epochs I run:
Furthermore, when I run predictions based off the model it seems that the predicted output is basically the same for every image, with only slight variation between each. It seems the model predicts an array of coordinates that looks somewhat like what a splayed hand might, in the general areas hands might be most likely to be found. A catch-all solution to minimize deviation as opposed to a custom solution for each image. These images illustrate this, with the green being predicted points, and the red being the actual points for the left hand:
So, I was wondering what might be causing this, be it the model, the data, or both, because nothing I've tried with either modifying the model or augmenting the data seems to have done any good. I've even tried reducing the complexity to predict for one hand only, to predict a bounding box for each hand, and to predict a single keypoint, but no matter what I try, the results are pretty inaccurate.
Thus, any suggestions for what I could do to help the model converge to create more accurate & custom predictions for each image of hands it sees would be very greatly appreciated.
Thanks,
Sam
Usually, neural networks will have a very hard time to predict exact coordinates of landmarks. A better approach is probably a fully convolutional network. This would work as follows:
You omit the dense layers at the end and thus end up with an output of (m, n, n_filters) with m and n being the dimensions of your downsampled feature maps (since you use maxpooling at some earlier stage in the network they will be lower resolution than your input image).
You set n_filters for the last (output-)layer to the number of different landmarks you want to detect plus one more to indicate no landmark.
You remove some of the max pooling such that your final output has a fairly high resolution (so the earlier referenced m and n are bigger). Now your output has shape mxnx(n_landmarks+1) and each of the nxm (n_landmark+1)-dimensional vectors indicate which landmark is present as the position in the image that corresponds to the position in the mxn grid. So the activation for your last output convolutional layer needs to be a softmax to represent probabilities.
Now you can train your network to predict the landmarks locally without having to use dense layers.
This is a very simple architecture and for optimal results a more sophisticated architecture might be needed, but I think this should give you a first idea of a better approach than using the dense layers for the prediction.
And for the explanation why your network does predict the same values every time: This is probably, because your network is just not able to learn what you want it to learn because it is not suited to do so. If this is the case, the network will just learn to predict a value, that is fairly good for most of the images (so basically the "average" position of each landmark for all of your images).
I am training an autoencoder using keras,with the encoder part as :
self.encoder = tf.keras.Sequential()
self.encoder.add(tf.keras.layers.Dropout(rate=0.2))
self.encoder.add(layers.Dense(14, activation='relu'))
self.encoder.add(layers.Dense(10, activation='relu'))
I am using Dropout at the start to create noise.My input is a 14-dimensional dataset.What dropout does now is dropping randomly each time 20% of the nodes meaning dropping 20% of the features at each time.What i would like to do is drop a specific feature,let's say feature_3(i suppose this means dropping a specific node),with a probability of 20% in each training step.
Could this be done using Keras?
If yes then how?
I do think you misunderstand how Dropout works.
https://www.tensorflow.org/api_docs/python/tf/keras/layers/Dropout
Your expectations is what dropout actually is. Also keras.layers.Dropout does not "create noise"
If you'd like to set the dropout mask:
noise_shape: 1D integer tensor representing the shape of the binary dropout mask that will be multiplied with the input. For instance, if your inputs have shape (batch_size, timesteps, features) and you want the dropout mask to be the same for all timesteps, you can use noise_shape=(batch_size, 1, features).
Note that noise_shape describes the behavior of the feature's dropout and is not related to adding/substracting noise to your features.
I know that “Time Distributed” layers are used when we have several images that are chronologically ordered to detect movements, actions, directions etc.
However, I work on speech classification using spectrograms. Every speech is transformed into a spectrogram, which will be fed later to a neural network to perform classification. So my database is in the form of 2093 RGB images(100x100x3). For now I have used a CNN and the input is
x_train = np.array(x_train).reshape(2093,100,100, 3)
And every thing works just fine.
But now, I would like to use CNN+BLSTM (similar to the following picture, which is taken from this paper) , which means I am going to need time steps. So, every image should be divided into smaller frames.
The question is, how to prepare the data to do such a thing ?
Assuming that I want to divide every image into 10 frames (time steps). Should I just reshape the data
x_train = np.array(x_train).reshape(2093,10,10,100, 3)
Which works just fine but I'm not sure if it's the right thing , or there is another way to do that ?
This is the model that I'm using
model = tf.keras.Sequential([
tf.keras.layers.TimeDistributed(tf.keras.layers.Conv2D(filters=64, kernel_size=2, padding='same', activation='relu', input_shape=(100,100,3),name="conv1")),
tf.keras.layers.Dropout(0.3),
tf.keras.layers.TimeDistributed(tf.keras.layers.MaxPooling2D(pool_size=2)),
tf.keras.layers.TimeDistributed(tf.keras.layers.Conv2D(filters=128, kernel_size=2, padding='same', activation='relu')),
tf.keras.layers.Dropout(0.3),
tf.keras.layers.TimeDistributed(tf.keras.layers.MaxPooling2D(pool_size=2)),
tf.keras.layers.TimeDistributed(tf.keras.layers.Conv2D(filters=256, kernel_size=2, padding='same', activation='relu')),
tf.keras.layers.Dropout(0.3),
tf.keras.layers.TimeDistributed(tf.keras.layers.MaxPooling2D(pool_size=2)),
tf.keras.layers.TimeDistributed(tf.keras.layers.Flatten()),
tf.keras.layers.Bidirectional(tf.keras.layers.LSTM(64)),
tf.keras.layers.Dropout(0.3),
tf.keras.layers.Dense(200, activation="relu"),
tf.keras.layers.Dense(10, activation= "softmax")
])
By using the previous model, I got 47% on train accuracy and 46% accuracy on validation accuracy, but with using only CNN I got 95% on train and 71% on validation, could anyone give me a hint how to solve this problem ?
I want to predict the estimated wait time based on images using a CNN. So I would imagine that this would use a CNN to output a regression type output using a loss function of RMSE which is what I am using right now, but it is not working properly.
Can someone point out examples that use CNN image recognition to output a scalar/regression output (instead of a class output) similar to wait time so that I can use their techniques to get this to work because I haven't been able to find a suitable example.
All of the CNN examples that I found are for the MSINT data and distinguishing between cats and dogs which output a class output, not a number/scalar output of wait time.
Can someone give me an example using tensorflow of a CNN giving a scalar or regression output based on image recognition.
Thanks so much! I am honestly super stuck and am getting no progress and it has been over two weeks working on this same problem.
Check out the Udacity self-driving-car models which take an input image from a dash cam and predict a steering angle (i.e. continuous scalar) to stay on the road...usually using a regression output after one or more fully connected layers on top of the CNN layers.
https://github.com/udacity/self-driving-car/tree/master/steering-models/community-models
Here is a typical model:
https://github.com/udacity/self-driving-car/tree/master/steering-models/community-models/autumn
...it uses tf.atan() or you can use tf.tanh() or just linear to get your final output y.
Use MSE for your loss function.
Here is another example in keras...
model = models.Sequential()
model.add(convolutional.Convolution2D(16, 3, 3, input_shape=(32, 128, 3), activation='relu'))
model.add(pooling.MaxPooling2D(pool_size=(2, 2)))
model.add(convolutional.Convolution2D(32, 3, 3, activation='relu'))
model.add(pooling.MaxPooling2D(pool_size=(2, 2)))
model.add(convolutional.Convolution2D(64, 3, 3, activation='relu'))
model.add(pooling.MaxPooling2D(pool_size=(2, 2)))
model.add(core.Flatten())
model.add(core.Dense(500, activation='relu'))
model.add(core.Dropout(.5))
model.add(core.Dense(100, activation='relu'))
model.add(core.Dropout(.25))
model.add(core.Dense(20, activation='relu'))
model.add(core.Dense(1))
model.compile(optimizer=optimizers.Adam(lr=1e-04), loss='mean_squared_error')
They key difference from the MNIST examples is that instead of funneling down to a N-dim vector of logits into softmax w/ cross entropy loss, for your regression output you take it down to a 1-dim vector w/ MSE loss. (you can also have a mix of multiple classification and regression outputs in the final layer...like in YOLO object detection)
The key is to have NO activation function in your last Fully Connected (output) layer. Note that you must have at least 1 FC layer beforehand.
I am running a CNN for left and right shoeprint classfication. I have 190,000 training images and I use 10% of it for validation. My model is setup as shown below. I get the paths of all the images, read them in and resize them. I normalize the image, and then fit it to the model. My issue is that I have stuck at a training accuracy of 62.5% and a loss of around 0.6615-0.6619. Is there something wrong that I am doing? How can I stop this from happening?
Just some interesting points to note:
I first tested this on 10 images I was having the same issue but changing the optimizer to adam and batch size to 4 worked.
I then tested on more and more images, but each time I would need to change the batch size to get improvements in the accuracy and loss. With 10,000 images I had to use a batch size of 500 and optimizer rmsprop. However, the accuracy and loss only really began to change after epoch 10.
I am now training on 190,000 images and I cannot increase the batch size as my GPU is at is max.
imageWidth = 50
imageHeight = 150
def get_filepaths(directory):
file_paths = []
for filename in files:
filepath = os.path.join(root, filename)
file_paths.append(filepath) # Add it to the list.
return file_paths
def cleanUpPaths(fullFilePaths):
cleanPaths = []
for f in fullFilePaths:
if f.endswith(".png"):
cleanPaths.append(f)
return cleanPaths
def getTrainData(paths):
trainData = []
for i in xrange(1,190000,2):
im = image.imread(paths[i])
im = image.imresize(im, (150,50))
im = (im-255)/float(255)
trainData.append(im)
trainData = np.asarray(trainData)
right = np.zeros(47500)
left = np.ones(47500)
trainLabels = np.concatenate((left, right))
trainLabels = np_utils.to_categorical(trainLabels)
return (trainData, trainLabels)
#create the convnet
model = Sequential()
model.add(Conv2D(32, (3, 3), activation='relu', input_shape=(imageWidth,imageHeight,1),strides=1))#32
model.add(Conv2D(32, (3, 3), activation='relu'))
model.add(MaxPooling2D(pool_size=(2, 2)))
model.add(Dropout(0.25))
model.add(Conv2D(64, (3, 3), activation='relu',strides=1))
model.add(Conv2D(64, (3, 3), activation='relu'))
model.add(MaxPooling2D(pool_size=(2, 2)))
model.add(Dropout(0.25))
model.add(Conv2D(64, (3, 3), activation='relu'))
model.add(MaxPooling2D(pool_size=(1, 3)))
model.add(Dropout(0.25))
model.add(Conv2D(64, (1, 2), activation='relu'))
model.add(MaxPooling2D(pool_size=(2, 1)))
model.add(Dropout(0.25))
model.add(Flatten())
model.add(Dense(256, activation='relu'))
model.add(Dropout(0.5))
model.add(Dense(2, activation='softmax'))
sgd = SGD(lr=0.01)
model.compile(loss='categorical_crossentropy', optimizer='rmsprop',metrics=['accuracy'])
#prepare the training data*/
trainPaths = get_filepaths("better1/train")
trainPaths = cleanUpPaths(trainPaths)
(trainData, trainLabels) = getTrainData(trainPaths)
trainData = np.reshape(trainData,(95000,imageWidth,imageHeight,1)).astype('float32')
trainData = (trainData-255)/float(255)
#train the convnet***
model.fit(trainData, trainLabels, batch_size=500, epochs=50, validation_split=0.2)
#/save the model and weights*/
model.save('myConvnet_model5.h5');
model.save_weights('myConvnet_weights5.h5');
I've had this issue a number of times now, so thought to make a little recap of it and possible solutions etc. to help people in the future.
Issue: Model predicts one of the 2 (or more) possible classes for all data it sees*
Confirming issue is occurring: Method 1: accuracy for model stays around 0.5 while training (or 1/n where n is number of classes). Method 2: Get the counts of each class in predictions and confirm it's predicting all one class.
Fixes/Checks (in somewhat of an order):
Double Check Model Architecture: use model.summary(), inspect the model.
Check Data Labels: make sure the labelling of your train data hasn't got mixed up somewhere in the preprocessing etc. (it happens!)
Check Train Data Feeding Is Randomised: make sure you are not feeding your train data to the model one class at a time. For instance if using ImageDataGenerator().flow_from_directory(PATH), check that param shuffle=True and that batch_size is greater than 1.
Check Pre-Trained Layers Are Not Trainable:** If using a pre-trained model, ensure that any layers that use pre-trained weights are NOT initially trainable. For the first epochs, only the newly added (randomly initialised) layers should be trainable; for layer in pretrained_model.layers: layer.trainable = False should be somewhere in your code.
Ramp Down Learning Rate: Keep reducing your learning rate by factors of 10 and retrying. Note you will have to fully reinitialize the layers you are trying to train each time you try a new learning rate. (For instance, I had this issue that was only solved once I got down to lr=1e-6, so keep going!)
If any of you know of more fixes/checks that could possible get the model training properly then please do contribute and I'll try to update the list.
**Note that is common to make more of the pretrained model trainable, once the new layers have been initially trained "enough"
*Other names for the issue to help searches get here...
keras tensorflow theano CNN convolutional neural network bad training stuck fixed not static broken bug bugged jammed training optimization optimisation only 0.5 accuracy does not change only predicts one single class wont train model stuck on class model resetting itself between epochs keras CNN same output
You can try to add a BatchNornmalization() layer after MaxPooling2D(). It works for me.
I just have 2 things more to add to the great list of DBCerigo.
Check activation functions: some layers have linear activation function by default, if you do not insert some non linearity into your model it wont be able to generalize, so the net will try to learn how to separate linearly a feature space that is not linear. Making sure you have your non linearity set is a good checkpoint.
Check Model Complexity: if you have a relatively simple model and it learns only till the 1st or the 2nd epoch and then it stalls, it may be that it is trying to learn something too complex. Try making the model deeper. This usually happens when working with frozen models with only 1 or 2 layers unfrozen.
Although the 2nd one may be obvious, I run into his problem once and I lost lots of time checking everythin (data, batches, LR...) before figuring out.
Hope this helps
I would try a couple of things. A lower learning rate should help with more data. Generally, adapting the optimizer should help. Additionally your network seems really small, you might want to increase the capacity of the model by adding layers or increasing the number of filters in the layers.
A better description on how to apply deep learning in practice is given here.
in my case it is the activification function matters. I change from 'sgd' to 'a'