I am trying to run some sample queries from gremlin docs in DataStax Enterprise gremlin console.
gremlin> x = [1,2,3]
==>1
==>2
==>3
gremlin> x._().transform{it+1}
No signature of method: java.util.ArrayList._() is applicable for argument types: () values: []
Possible solutions: is(java.lang.Object), min(), pop(), any(), max(), sum()
Type ':help' or ':h' for help.
Display stack trace? [yN]y
org.apache.tinkerpop.gremlin.groovy.plugin.RemoteException: No signature of method: java.util.ArrayList._() is applicable for argument types: () values: []
Possible solutions: is(java.lang.Object), min(), pop(), any(), max(), sum()
at org.apache.tinkerpop.gremlin.console.groovy.plugin.DriverRemoteAcceptor.submit(DriverRemoteAcceptor.java:188)
at org.apache.tinkerpop.gremlin.console.GremlinGroovysh.execute(GremlinGroovysh.groovy:99)
at org.codehaus.groovy.tools.shell.Shell.leftShift(Shell.groovy:122)
at org.codehaus.groovy.tools.shell.ShellRunner.work(ShellRunner.groovy:95)
at org.codehaus.groovy.tools.shell.InteractiveShellRunner.super$2$work(InteractiveShellRunner.groovy)
at sun.reflect.GeneratedMethodAccessor32.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:93)
at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:325)
at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1213)
at org.codehaus.groovy.runtime.ScriptBytecodeAdapter.invokeMethodOnSuperN(ScriptBytecodeAdapter.java:132)
at org.codehaus.groovy.runtime.ScriptBytecodeAdapter.invokeMethodOnSuper0(ScriptBytecodeAdapter.java:152)
at org.codehaus.groovy.tools.shell.InteractiveShellRunner.work(InteractiveShellRunner.groovy:124)
at org.codehaus.groovy.tools.shell.ShellRunner.run(ShellRunner.groovy:59)
at org.codehaus.groovy.tools.shell.InteractiveShellRunner.super$2$run(InteractiveShellRunner.groovy)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:93)
at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:325)
at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1213)
at org.codehaus.groovy.runtime.ScriptBytecodeAdapter.invokeMethodOnSuperN(ScriptBytecodeAdapter.java:132)
at org.codehaus.groovy.runtime.ScriptBytecodeAdapter.invokeMethodOnSuper0(ScriptBytecodeAdapter.java:152)
at org.codehaus.groovy.tools.shell.InteractiveShellRunner.run(InteractiveShellRunner.groovy:83)
at org.codehaus.groovy.vmplugin.v7.IndyInterface.selectMethod(IndyInterface.java:232)
at org.apache.tinkerpop.gremlin.console.Console.<init>(Console.groovy:169)
at org.codehaus.groovy.vmplugin.v7.IndyInterface.selectMethod(IndyInterface.java:232)
at org.apache.tinkerpop.gremlin.console.Console.main(Console.groovy:481)
gremlin>
I want to understand, what version of Gremlin server, Client is used in Datastax enterprise version 5.1?
Why the queries failed.?
DSE Graph is not built on TinkerPop 2.x. 2.x is no longer maintained and GremlinDocs is only around for reference for legacy applications that still might use it.
DSE Graph supports TinkerPop 3.x - as do most current graph databases. You can find documentation on that here: http://tinkerpop.apache.org/
Related
I'm using Payara 5.184 and Java 1.8.241 on Linux (Ubuntu 19.10). I'm also using Liquibase as my database schema change management. A field named myDataSource is being injected as follows:
#Resource(mappedName = "java:global/ds")
private DataSource myDataSource;
When the method createDataSource() from Liquibase is invoked I noticed that the variable myDataSource is null, what makes me understand that the resource is not being properly injected. This error seems to happen only on Linux, as my other colleagues that run Windows did not have any problems so far. We're using exactly the same versions of Payara/Java. Is there any specific step that needs to be done on Linux? Here it is the stacktrace found on Payara logs.
Exception during lifecycle processing
org.glassfish.deployment.common.DeploymentException: CDI deployment failure:Exception List with 2 exceptions:
Exception 0 :
org.jboss.weld.exceptions.WeldException: WELD-000049: Unable to invoke public void liquibase.integration.cdi.CDILiquibase.onStartup() on liquibase.integration.cdi.CDILiquibase#911a89a
at org.jboss.weld.injection.producer.DefaultLifecycleCallbackInvoker.invokeMethods(DefaultLifecycleCallbackInvoker.java:85)
at org.jboss.weld.injection.producer.DefaultLifecycleCallbackInvoker.postConstruct(DefaultLifecycleCallbackInvoker.java:66)
at org.jboss.weld.injection.producer.BasicInjectionTarget.postConstruct(BasicInjectionTarget.java:122)
at liquibase.integration.cdi.CDIBootstrap$1.create(CDIBootstrap.java:95)
at liquibase.integration.cdi.CDIBootstrap$1.create(CDIBootstrap.java:38)
at org.jboss.weld.contexts.AbstractContext.get(AbstractContext.java:96)
at org.jboss.weld.bean.ContextualInstanceStrategy$DefaultContextualInstanceStrategy.get(ContextualInstanceStrategy.java:100)
at org.jboss.weld.bean.ContextualInstance.get(ContextualInstance.java:50)
at org.jboss.weld.bean.proxy.ContextBeanInstance.getInstance(ContextBeanInstance.java:102)
at org.jboss.weld.bean.proxy.ProxyMethodHandler.getInstance(ProxyMethodHandler.java:131)
at liquibase.integration.cdi.CDILiquibase$Proxy$_$$_WeldClientProxy.toString(Unknown Source)
at liquibase.integration.cdi.CDIBootstrap.afterDeploymentValidation(CDIBootstrap.java:111)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.jboss.weld.injection.StaticMethodInjectionPoint.invoke(StaticMethodInjectionPoint.java:95)
at org.jboss.weld.injection.MethodInvocationStrategy$SpecialParamPlusBeanManagerStrategy.invoke(MethodInvocationStrategy.java:144)
at org.jboss.weld.event.ObserverMethodImpl.sendEvent(ObserverMethodImpl.java:330)
at org.jboss.weld.event.ExtensionObserverMethodImpl.sendEvent(ExtensionObserverMethodImpl.java:123)
at org.jboss.weld.event.ObserverMethodImpl.sendEvent(ObserverMethodImpl.java:308)
at org.jboss.weld.event.ObserverMethodImpl.notify(ObserverMethodImpl.java:286)
at javax.enterprise.inject.spi.ObserverMethod.notify(ObserverMethod.java:124)
at org.jboss.weld.util.Observers.notify(Observers.java:166)
at org.jboss.weld.event.ObserverNotifier.notifySyncObservers(ObserverNotifier.java:285)
at org.jboss.weld.event.ObserverNotifier.notify(ObserverNotifier.java:273)
at org.jboss.weld.event.ObserverNotifier.fireEvent(ObserverNotifier.java:177)
at org.jboss.weld.event.ObserverNotifier.fireEvent(ObserverNotifier.java:171)
at org.jboss.weld.bootstrap.events.AbstractContainerEvent.fire(AbstractContainerEvent.java:53)
at org.jboss.weld.bootstrap.events.AbstractDeploymentContainerEvent.fire(AbstractDeploymentContainerEvent.java:35)
at org.jboss.weld.bootstrap.events.AfterDeploymentValidationImpl.fire(AfterDeploymentValidationImpl.java:28)
at org.jboss.weld.bootstrap.WeldStartup.validateBeans(WeldStartup.java:499)
at org.jboss.weld.bootstrap.WeldBootstrap.validateBeans(WeldBootstrap.java:93)
at org.glassfish.weld.WeldDeployer.processApplicationLoaded(WeldDeployer.java:517)
at org.glassfish.weld.WeldDeployer.event(WeldDeployer.java:428)
at org.glassfish.kernel.event.EventsImpl.send(EventsImpl.java:131)
at org.glassfish.internal.data.ApplicationInfo.load(ApplicationInfo.java:333)
at com.sun.enterprise.v3.server.ApplicationLifecycle.prepare(ApplicationLifecycle.java:497)
at org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:540)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:549)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:545)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2.execute(CommandRunnerImpl.java:544)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:575)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:567)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:360)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:566)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1475)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.access$1300(CommandRunnerImpl.java:111)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1857)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1733)
at com.sun.enterprise.v3.admin.AdminAdapter.doCommand(AdminAdapter.java:564)
at com.sun.enterprise.v3.admin.AdminAdapter.onMissingResource(AdminAdapter.java:251)
at org.glassfish.grizzly.http.server.StaticHttpHandlerBase.service(StaticHttpHandlerBase.java:166)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:520)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:217)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:182)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:156)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:218)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:95)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:260)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:177)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:109)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:88)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:53)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:524)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:89)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:94)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:33)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:114)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:569)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:549)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.jboss.weld.injection.producer.DefaultLifecycleCallbackInvoker.invokeMethods(DefaultLifecycleCallbackInvoker.java:83)
... 74 more
Caused by: java.lang.NullPointerException
at liquibase.integration.cdi.CDILiquibase.performUpdate(CDILiquibase.java:126)
at liquibase.integration.cdi.CDILiquibase.onStartup(CDILiquibase.java:116)
... 79 more
EDIT: Added stacktrace
EDIT 2: Problem solved! It ended up being something not related with Liquibase at all. The queue size of the PayaraExecutorService was too small, which leads me to think that some tasks submissions were rejected. Apparently this is a known issue of Payara 5.184, and a related issue had already been opened on Github (https://github.com/payara/Payara/issues/3495). Once I increased the size of the queue to a large number everything started working as expected.
I think you need to use lookup to inject the resource.
Compare this bug report: https://github.com/payara/Payara/issues/4413
I am unable to create index on Node properties in gremlin using the following command:
create index on :account(node_id)
But running this gives me the following error:
gremlin> :> create index on :account(node_id)
org.apache.tinkerpop.gremlin.jsr223.console.RemoteException: java.util.concurrent.CompletionException: org.apache.tinkerpop.gremlin.driver.exception.ResponseException: CreateIndex(LabelName(account),List(PropertyKeyName(node_id))) (of class org.opencypher.v9_0.ast.CreateIndex)
at org.opencypher.gremlin.console.jsr223.CypherRemoteAcceptor.submit(CypherRemoteAcceptor.java:108)
at org.apache.tinkerpop.gremlin.console.commands.SubmitCommand.execute(SubmitCommand.groovy:41)
at org.codehaus.groovy.tools.shell.Shell.execute(Shell.groovy:104)
at org.codehaus.groovy.tools.shell.Groovysh.super$2$execute(Groovysh.groovy)
at sun.reflect.GeneratedMethodAccessor15.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:98)
at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:325)
at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1225)
at org.codehaus.groovy.runtime.ScriptBytecodeAdapter.invokeMethodOnSuperN(ScriptBytecodeAdapter.java:145)
at org.codehaus.groovy.tools.shell.Groovysh.executeCommand(Groovysh.groovy:273)
Am I using a wrong query here?
I'm trying to read a RabbitMQ queue using Apache Beam.
I've written some transformation code to have messages written to Kafka.
I've even tested my scenario using simple text messages.
Now I try to deploy it with the effective messages this transformer is made to run on. These are JSON message of a quite moderate size.
Strangely, when i try to read "production" messages, I get this exception stack trace.
java.lang.IllegalArgumentException: Unable to encode element 'ValueWithRecordId{id=[], value=org.apache.beam.sdk.io.rabbitmq.RabbitMqMessage#f179a7f}' with coder 'ValueWithRecordId$ValueWithRecordIdCoder(org.apache.beam.sdk.coders.SerializableCoder#76190fb2)'.
org.apache.beam.sdk.coders.Coder.getEncodedElementByteSize(Coder.java:300)
org.apache.beam.sdk.coders.Coder.registerByteSizeObserver(Coder.java:291)
org.apache.beam.sdk.util.WindowedValue$FullWindowedValueCoder.registerByteSizeObserver(WindowedValue.java:564)
org.apache.beam.sdk.util.WindowedValue$FullWindowedValueCoder.registerByteSizeObserver(WindowedValue.java:480)
org.apache.beam.runners.dataflow.worker.IntrinsicMapTaskExecutorFactory$ElementByteSizeObservableCoder.registerByteSizeObserver(IntrinsicMapTaskExecutorFactory.java:400)
org.apache.beam.runners.dataflow.worker.util.common.worker.OutputObjectAndByteCounter.update(OutputObjectAndByteCounter.java:125)
org.apache.beam.runners.dataflow.worker.DataflowOutputCounter.update(DataflowOutputCounter.java:64)
org.apache.beam.runners.dataflow.worker.util.common.worker.OutputReceiver.process(OutputReceiver.java:43)
org.apache.beam.runners.dataflow.worker.util.common.worker.ReadOperation.runReadLoop(ReadOperation.java:201)
org.apache.beam.runners.dataflow.worker.util.common.worker.ReadOperation.start(ReadOperation.java:159)
org.apache.beam.runners.dataflow.worker.util.common.worker.MapTaskExecutor.execute(MapTaskExecutor.java:77)
org.apache.beam.runners.dataflow.worker.StreamingDataflowWorker.process(StreamingDataflowWorker.java:1283)
org.apache.beam.runners.dataflow.worker.StreamingDataflowWorker.access$1000(StreamingDataflowWorker.java:147)
org.apache.beam.runners.dataflow.worker.StreamingDataflowWorker$6.run(StreamingDataflowWorker.java:1020)
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
java.lang.Thread.run(Thread.java:745)
Caused by: java.io.NotSerializableException: com.rabbitmq.client.impl.LongStringHelper$ByteArrayLongString
java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1184)
java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:348)
java.util.HashMap.internalWriteEntries(HashMap.java:1785)
java.util.HashMap.writeObject(HashMap.java:1362)
sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
java.lang.reflect.Method.invoke(Method.java:498)
java.io.ObjectStreamClass.invokeWriteObject(ObjectStreamClass.java:1028)
java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1496)
java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1432)
java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1178)
java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1548)
java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1509)
java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1432)
java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1178)
java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:348)
org.apache.beam.sdk.coders.SerializableCoder.encode(SerializableCoder.java:183)
org.apache.beam.sdk.coders.SerializableCoder.encode(SerializableCoder.java:53)
org.apache.beam.sdk.values.ValueWithRecordId$ValueWithRecordIdCoder.encode(ValueWithRecordId.java:105)
org.apache.beam.sdk.values.ValueWithRecordId$ValueWithRecordIdCoder.encode(ValueWithRecordId.java:99)
org.apache.beam.sdk.values.ValueWithRecordId$ValueWithRecordIdCoder.encode(ValueWithRecordId.java:81)
org.apache.beam.sdk.coders.Coder.getEncodedElementByteSize(Coder.java:297)
org.apache.beam.sdk.coders.Coder.registerByteSizeObserver(Coder.java:291)
org.apache.beam.sdk.util.WindowedValue$FullWindowedValueCoder.registerByteSizeObserver(WindowedValue.java:564)
org.apache.beam.sdk.util.WindowedValue$FullWindowedValueCoder.registerByteSizeObserver(WindowedValue.java:480)
org.apache.beam.runners.dataflow.worker.IntrinsicMapTaskExecutorFactory$ElementByteSizeObservableCoder.registerByteSizeObserver(IntrinsicMapTaskExecutorFactory.java:400)
org.apache.beam.runners.dataflow.worker.util.common.worker.OutputObjectAndByteCounter.update(OutputObjectAndByteCounter.java:125)
org.apache.beam.runners.dataflow.worker.DataflowOutputCounter.update(DataflowOutputCounter.java:64)
org.apache.beam.runners.dataflow.worker.util.common.worker.OutputReceiver.process(OutputReceiver.java:43)
org.apache.beam.runners.dataflow.worker.util.common.worker.ReadOperation.runReadLoop(ReadOperation.java:201)
org.apache.beam.runners.dataflow.worker.util.common.worker.ReadOperation.start(ReadOperation.java:159)
org.apache.beam.runners.dataflow.worker.util.common.worker.MapTaskExecutor.execute(MapTaskExecutor.java:77)
org.apache.beam.runners.dataflow.worker.StreamingDataflowWorker.process(StreamingDataflowWorker.java:1283)
org.apache.beam.runners.dataflow.worker.StreamingDataflowWorker.access$1000(StreamingDataflowWorker.java:147)
org.apache.beam.runners.dataflow.worker.StreamingDataflowWorker$6.run(StreamingDataflowWorker.java:1020)
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
java.lang.Thread.run(Thread.java:745)
My understanding is that the RabbitMQ reader consider the messages big enough to require the use of LongString, which is not serializable.
Am I right on this point ? And if so, how do I suggest RabbitMQ to use a simple String (which will be enough for these messages) ?
This is an Apache Beam (https://issues.apache.org/jira/browse/BEAM-7414) for which solution is ... not yet merged into Apache Beam repo by pure laziness (this is bad). If someone wants to have the fix immediatly, it is possible to build my branch https://github.com/Riduidel/beam/tree/fix/rabbitmq-message-not-serializable
Currently refactoring some PySpark code and this specific snippet is causing me issues whereas it has ran fine before:
zip_table=spark.read.format("org.apache.spark.sql.execution.datasources.csv.CSVFileFormat").schema(schemas.zip_schema).load(path_to_file,header=True)
zip_pandas = zip_table.toPandas()
running into:
Py4JJavaError: An error occurred while calling o167.get.
: java.util.NoSuchElementException: spark.sql.execution.pandas.respectSessionTimeZone
at org.apache.spark.sql.internal.SQLConf$$anonfun$getConfString$2.apply(SQLConf.scala:1175)
at org.apache.spark.sql.internal.SQLConf$$anonfun$getConfString$2.apply(SQLConf.scala:1175)
at scala.Option.getOrElse(Option.scala:121)
at org.apache.spark.sql.internal.SQLConf.getConfString(SQLConf.scala:1175)
at org.apache.spark.sql.RuntimeConfig.get(RuntimeConfig.scala:74)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244)
at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
at py4j.Gateway.invoke(Gateway.java:280)
at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
at py4j.commands.CallCommand.execute(CallCommand.java:79)
at py4j.GatewayConnection.run(GatewayConnection.java:214)
at java.lang.Thread.run(Thread.java:748)
Other Spark Dataframes are successfully able to call toPandas() while others such as this return the same error.
The file in question is not particularly big and should be able to fit in the driver no problem. Also, I know it may be better to just load it into Pandas directly and not convert from Spark, but there is further logic in the code that requires both Spark/Pandas dataframes (and a later re-architecture of this work will address this issue).
I successfully performed static weaving in EclipseLink-2.4.0 with eclipselink-staticweave-maven-plugin 1.0.3 , but when I also run integration tests. going through all layers in the system, they breaks. In startUp() method I create it's created an User entity which it's committed in the test DB. But in tearDown() method where I clear the DB state that entity (already weaved) could not be removed by same EntityManager.
The test goes without errors when entities are not weaved. What do you think the problem could be here ?
Here the exception status also:
java.lang.AbstractMethodError: nl.innovity.youbank.core.entity.user.User._persistence_setCacheKey(Lorg/eclipse/persistence/internal/identitymaps/CacheKey;)V
at org.eclipse.persistence.internal.descriptors.ObjectBuilder.updateCachedAttributes(ObjectBuilder.java:3790)
at org.eclipse.persistence.internal.sessions.MergeManager.mergeChangesOfWorkingCopyIntoOriginal(MergeManager.java:871)
at org.eclipse.persistence.internal.sessions.MergeManager.mergeChangesOfWorkingCopyIntoOriginal(MergeManager.java:687)
at org.eclipse.persistence.internal.sessions.MergeManager.mergeChanges(MergeManager.java:307)
at org.eclipse.persistence.internal.sessions.UnitOfWorkImpl.mergeChangesIntoParent(UnitOfWorkImpl.java:3260)
at org.eclipse.persistence.internal.sessions.RepeatableWriteUnitOfWork.mergeChangesIntoParent(RepeatableWriteUnitOfWork.java:369)
at org.eclipse.persistence.internal.sessions.RepeatableWriteUnitOfWork.commitRootUnitOfWork(RepeatableWriteUnitOfWork.java:283)
at org.eclipse.persistence.internal.sessions.UnitOfWorkImpl.commitAndResume(UnitOfWorkImpl.java:1147)
at org.eclipse.persistence.internal.jpa.transaction.EntityTransactionImpl.commitInternal(EntityTransactionImpl.java:84)
at org.eclipse.persistence.internal.jpa.transaction.EntityTransactionImpl.commit(EntityTransactionImpl.java:63)
at nl.innovity.youbank.core.dao.DBManager.reinitDB(DBManager.java:510)
at nl.innovity.youbank.core.integration.IntegrationTest.tearDown(IntegrationTest.java:126)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:44)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:41)
at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:37)
at org.junit.runners.BlockJUnit4ClassRunner.runNotIgnored(BlockJUnit4ClassRunner.java:79)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:71)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:49)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:193)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:52)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:191)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:42)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:184)
at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28)
at org.junit.runners.ParentRunner.run(ParentRunner.java:236)
at org.apache.maven.surefire.junit4.JUnit4TestSet.execute(JUnit4TestSet.java:35)
at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:146)
at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:97)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.maven.surefire.booter.ProviderFactory$ClassLoaderProxy.invoke(ProviderFactory.java:103)
at $Proxy0.invoke(Unknown Source)
at org.apache.maven.surefire.booter.SurefireStarter.invokeProvider(SurefireStarter.java:145)
at org.apache.maven.surefire.booter.SurefireStarter.runSuitesInProcess(SurefireStarter.java:87)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:69)
Thanks in advance,
Simeon
It looks like a problem with the configuratoin of the maven static weaving - it is using a different EclipseLink version than 2.4 version you are running against. Looking at the doc you linked, it is set by default to use EclipseLink 2.3.2: I believe EclipseLink 2.4 changed to add the _persistence_setCacheKey method to the PersistenceEntity used in weaving. This method will be missing if you weaving using EclipseLink 2.3.2.
You will need to change the dependencies list to point to EclipseLink 2.4 as the doc you linked to described (where it refers to using 2.3.X versions other than 2.3.2).