Issue installing Keras with tensorflow-gpu - tensorflow

Question

I was trying to run spyder with tensorflow-gpu and managed to setup tensorflow-gpu through conda in anaconda prompt. However post this step when i try to install keras, i get the following error:
(tenserflow-gpu) C:\Users\Nithin\Documents>pip install keras
Collecting keras
Downloading Keras-2.0.8-py2.py3-none-any.whl (276kB)
100% |################################| 276kB 161kB/s
Collecting scipy>=0.14 (from keras)
Downloading scipy-0.19.1.tar.gz (14.1MB)
100% |################################| 14.1MB 465kB/s
Requirement already satisfied: numpy>=1.9.1 in c:\users\nithin\appdata\local\conda\conda\envs\tenserflow-gpu\lib\site-packages (from keras)
Requirement already satisfied: six>=1.9.0 in c:\users\nithin\appdata\local\conda\conda\envs\tenserflow-gpu\lib\site-packages (from keras)
Collecting pyyaml (from keras)
Downloading PyYAML-3.12-cp35-cp35m-win_amd64.whl (195kB)
100% |################################| 204kB 308kB/s
Building wheels for collected packages: scipy
Running setup.py bdist_wheel for scipy ... error
Complete output from command C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\python.exe -u -c "import setuptools, tokenize;__file__='C:\\Users\\Nithin\\AppData\\Local\\Temp\\pip-build-ju_zavf1\\scipy\\setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d C:\Users\Nithin\AppData\Local\Temp\tmpuhtgm8rppip-wheel- --python-tag cp35:
lapack_opt_info:
lapack_mkl_info:
libraries mkl_rt not found in ['C:\\Users\\Nithin\\AppData\\Local\\conda\\conda\\envs\\tenserflow-gpu\\lib', 'C:\\', 'C:\\Users\\Nithin\\AppData\\Local\\conda\\conda\\envs\\tenserflow-gpu\\libs']
NOT AVAILABLE
openblas_lapack_info:
C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib\site-packages\numpy\distutils\system_info.py:655: UserWarning: Specified path c:\opt\64\lib is invalid.
return self.get_paths(self.section, key)
libraries libopenblas_v0.2.20_mingwpy not found in []
NOT AVAILABLE
atlas_3_10_threads_info:
Setting PTATLAS=ATLAS
libraries tatlas,tatlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib
libraries lapack_atlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib
libraries tatlas,tatlas not found in C:\
libraries lapack_atlas not found in C:\
libraries tatlas,tatlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\libs
libraries lapack_atlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\libs
<class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
NOT AVAILABLE
atlas_3_10_info:
libraries satlas,satlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib
libraries lapack_atlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib
libraries satlas,satlas not found in C:\
libraries lapack_atlas not found in C:\
libraries satlas,satlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\libs
libraries lapack_atlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\libs
<class 'numpy.distutils.system_info.atlas_3_10_info'>
NOT AVAILABLE
atlas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib
libraries lapack_atlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib
libraries ptf77blas,ptcblas,atlas not found in C:\
libraries lapack_atlas not found in C:\
libraries ptf77blas,ptcblas,atlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\libs
libraries lapack_atlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\libs
<class 'numpy.distutils.system_info.atlas_threads_info'>
NOT AVAILABLE
atlas_info:
libraries f77blas,cblas,atlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib
libraries lapack_atlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib
libraries f77blas,cblas,atlas not found in C:\
libraries lapack_atlas not found in C:\
libraries f77blas,cblas,atlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\libs
libraries lapack_atlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\libs
<class 'numpy.distutils.system_info.atlas_info'>
NOT AVAILABLE
C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib\site-packages\numpy\distutils\system_info.py:572: UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
self.calc_info()
lapack_info:
libraries lapack not found in ['C:\\Users\\Nithin\\AppData\\Local\\conda\\conda\\envs\\tenserflow-gpu\\lib', 'C:\\', 'C:\\Users\\Nithin\\AppData\\Local\\conda\\conda\\envs\\tenserflow-gpu\\libs']
NOT AVAILABLE
C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib\site-packages\numpy\distutils\system_info.py:572: UserWarning:
Lapack (http://www.netlib.org/lapack/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [lapack]) or by setting
the LAPACK environment variable.
self.calc_info()
lapack_src_info:
NOT AVAILABLE
C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib\site-packages\numpy\distutils\system_info.py:572: UserWarning:
Lapack (http://www.netlib.org/lapack/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [lapack_src]) or by setting
the LAPACK_SRC environment variable.
self.calc_info()
NOT AVAILABLE
Running from scipy source directory.
non-existing path in 'scipy\\integrate': 'quadpack.h'
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "C:\Users\Nithin\AppData\Local\Temp\pip-build-ju_zavf1\scipy\setup.py", line 416, in <module>
setup_package()
File "C:\Users\Nithin\AppData\Local\Temp\pip-build-ju_zavf1\scipy\setup.py", line 412, in setup_package
setup(**metadata)
File "C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib\site-packages\numpy\distutils\core.py", line 135, in setup
config = configuration()
File "C:\Users\Nithin\AppData\Local\Temp\pip-build-ju_zavf1\scipy\setup.py", line 336, in configuration
config.add_subpackage('scipy')
File "C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib\site-packages\numpy\distutils\misc_util.py", line 1029, in add_subpackage
caller_level = 2)
File "C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib\site-packages\numpy\distutils\misc_util.py", line 998, in get_subpackage
caller_level = caller_level + 1)
File "C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib\site-packages\numpy\distutils\misc_util.py", line 935, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy\setup.py", line 15, in configuration
config.add_subpackage('linalg')
File "C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib\site-packages\numpy\distutils\misc_util.py", line 1029, in add_subpackage
caller_level = 2)
File "C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib\site-packages\numpy\distutils\misc_util.py", line 998, in get_subpackage
caller_level = caller_level + 1)
File "C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib\site-packages\numpy\distutils\misc_util.py", line 935, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy\linalg\setup.py", line 20, in configuration
raise NotFoundError('no lapack/blas resources found')
numpy.distutils.system_info.NotFoundError: no lapack/blas resources found
----------------------------------------
Failed building wheel for scipy
Running setup.py clean for scipy
Complete output from command C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\python.exe -u -c "import setuptools, tokenize;__file__='C:\\Users\\Nithin\\AppData\\Local\\Temp\\pip-build-ju_zavf1\\scipy\\setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" clean --all:
`setup.py clean` is not supported, use one of the following instead:
- `git clean -xdf` (cleans all files)
- `git clean -Xdf` (cleans all versioned files, doesn't touch
files that aren't checked into the git repo)
Add `--force` to your command to use it anyway if you must (unsupported).
----------------------------------------
Failed cleaning build dir for scipy
Failed to build scipy
Installing collected packages: scipy, pyyaml, keras
Running setup.py install for scipy ... error
Complete output from command C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\python.exe -u -c "import setuptools, tokenize;__file__='C:\\Users\\Nithin\\AppData\\Local\\Temp\\pip-build-ju_zavf1\\scipy\\setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record C:\Users\Nithin\AppData\Local\Temp\pip-9xcwjndr-record\install-record.txt --single-version-externally-managed --compile:
Note: if you need reliable uninstall behavior, then install
with pip instead of using `setup.py install`:
- `pip install .` (from a git repo or downloaded source
release)
- `pip install scipy` (last SciPy release on PyPI)
lapack_opt_info:
lapack_mkl_info:
libraries mkl_rt not found in ['C:\\Users\\Nithin\\AppData\\Local\\conda\\conda\\envs\\tenserflow-gpu\\lib', 'C:\\', 'C:\\Users\\Nithin\\AppData\\Local\\conda\\conda\\envs\\tenserflow-gpu\\libs']
NOT AVAILABLE
openblas_lapack_info:
C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib\site-packages\numpy\distutils\system_info.py:655: UserWarning: Specified path c:\opt\64\lib is invalid.
return self.get_paths(self.section, key)
libraries libopenblas_v0.2.20_mingwpy not found in []
NOT AVAILABLE
atlas_3_10_threads_info:
Setting PTATLAS=ATLAS
libraries tatlas,tatlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib
libraries lapack_atlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib
libraries tatlas,tatlas not found in C:\
libraries lapack_atlas not found in C:\
libraries tatlas,tatlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\libs
libraries lapack_atlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\libs
<class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
NOT AVAILABLE
atlas_3_10_info:
libraries satlas,satlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib
libraries lapack_atlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib
libraries satlas,satlas not found in C:\
libraries lapack_atlas not found in C:\
libraries satlas,satlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\libs
libraries lapack_atlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\libs
<class 'numpy.distutils.system_info.atlas_3_10_info'>
NOT AVAILABLE
atlas_threads_info:
Setting PTATLAS=ATLAS
libraries ptf77blas,ptcblas,atlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib
libraries lapack_atlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib
libraries ptf77blas,ptcblas,atlas not found in C:\
libraries lapack_atlas not found in C:\
libraries ptf77blas,ptcblas,atlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\libs
libraries lapack_atlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\libs
<class 'numpy.distutils.system_info.atlas_threads_info'>
NOT AVAILABLE
atlas_info:
libraries f77blas,cblas,atlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib
libraries lapack_atlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib
libraries f77blas,cblas,atlas not found in C:\
libraries lapack_atlas not found in C:\
libraries f77blas,cblas,atlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\libs
libraries lapack_atlas not found in C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\libs
<class 'numpy.distutils.system_info.atlas_info'>
NOT AVAILABLE
C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib\site-packages\numpy\distutils\system_info.py:572: UserWarning:
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
self.calc_info()
lapack_info:
libraries lapack not found in ['C:\\Users\\Nithin\\AppData\\Local\\conda\\conda\\envs\\tenserflow-gpu\\lib', 'C:\\', 'C:\\Users\\Nithin\\AppData\\Local\\conda\\conda\\envs\\tenserflow-gpu\\libs']
NOT AVAILABLE
C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib\site-packages\numpy\distutils\system_info.py:572: UserWarning:
Lapack (http://www.netlib.org/lapack/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [lapack]) or by setting
the LAPACK environment variable.
self.calc_info()
lapack_src_info:
NOT AVAILABLE
C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib\site-packages\numpy\distutils\system_info.py:572: UserWarning:
Lapack (http://www.netlib.org/lapack/) sources not found.
Directories to search for the sources can be specified in the
numpy/distutils/site.cfg file (section [lapack_src]) or by setting
the LAPACK_SRC environment variable.
self.calc_info()
NOT AVAILABLE
Running from scipy source directory.
non-existing path in 'scipy\\integrate': 'quadpack.h'
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "C:\Users\Nithin\AppData\Local\Temp\pip-build-ju_zavf1\scipy\setup.py", line 416, in <module>
setup_package()
File "C:\Users\Nithin\AppData\Local\Temp\pip-build-ju_zavf1\scipy\setup.py", line 412, in setup_package
setup(**metadata)
File "C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib\site-packages\numpy\distutils\core.py", line 135, in setup
config = configuration()
File "C:\Users\Nithin\AppData\Local\Temp\pip-build-ju_zavf1\scipy\setup.py", line 336, in configuration
config.add_subpackage('scipy')
File "C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib\site-packages\numpy\distutils\misc_util.py", line 1029, in add_subpackage
caller_level = 2)
File "C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib\site-packages\numpy\distutils\misc_util.py", line 998, in get_subpackage
caller_level = caller_level + 1)
File "C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib\site-packages\numpy\distutils\misc_util.py", line 935, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy\setup.py", line 15, in configuration
config.add_subpackage('linalg')
File "C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib\site-packages\numpy\distutils\misc_util.py", line 1029, in add_subpackage
caller_level = 2)
File "C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib\site-packages\numpy\distutils\misc_util.py", line 998, in get_subpackage
caller_level = caller_level + 1)
File "C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\lib\site-packages\numpy\distutils\misc_util.py", line 935, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scipy\linalg\setup.py", line 20, in configuration
raise NotFoundError('no lapack/blas resources found')
numpy.distutils.system_info.NotFoundError: no lapack/blas resources found
----------------------------------------
Command "C:\Users\Nithin\AppData\Local\conda\conda\envs\tenserflow-gpu\python.exe -u -c "import setuptools, tokenize;__file__='C:\\Users\\Nithin\\AppData\\Local\\Temp\\pip-build-ju_zavf1\\scipy\\setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record C:\Users\Nithin\AppData\Local\Temp\pip-9xcwjndr-record\install-record.txt --single-version-externally-managed --compile" failed with error code 1 in C:\Users\Nithin\AppData\Local\Temp\pip-build-ju_zavf1\scipy\
(tenserflow-gpu) C:\Users\Nithin\Documents>
In conda i downgraded python to 3.5.2 from 3.6.2 as tensorflow-gpu would only work with 3.5.2.
Could some one please help. Thanks in advance.