So I'm trying to install lxml on my machine, and I can't seem to get it to work.
I've got Windows 8.1 64-bit and python 3.5
I've used both
pip install lxml
and
easy_install lxml
I keep getting this error message:
C:\Users\jgarber\Downloads>pip install readability-lxml --upgrade Requirement already up-to-date: readability-lxml in c:\python\lib\site-packages\ readability_lxml-0.6.2-py3.5.egg Requirement already up-to-date: chardet in c:\python\lib\site-packages (from rea dability-lxml) Collecting lxml (from readability-lxml) Using cached lxml-3.6.4.tar.gz Requirement already up-to-date: cssselect in c:\python\lib\site-packages\csssele ct-1.0.0-py3.5.egg (from readability-lxml) Installing collected packages: lxml Running setup.py install for lxml ... error
Complete output from command c:\python\python.exe -u -c "import setuptools, tokenize;__file__='C:\\Users\\jgarber\\AppData\\Local\\Temp\\pip-build-bypbiu8j\ \lxml\\setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().r eplace('\r\n', '\n'), __file__, 'exec'))" install --record C:\Users\jgarber\AppD ata\Local\Temp\pip-j8svsde4-record\install-record.txt
--single-version-externall y-managed --compile:
Building lxml version 3.6.4.
Building without Cython.
ERROR: b"'xslt-config' is not recognized as an internal or external command, \r\noperable program or batch file.\r\n"
** make sure the development packages of libxml2 and libxslt are installed *
*
Using build configuration of libxslt
running install
running build
running build_py
creating build
creating build\lib.win32-3.5
creating build\lib.win32-3.5\lxml
copying src\lxml\builder.py -> build\lib.win32-3.5\lxml
copying src\lxml\cssselect.py -> build\lib.win32-3.5\lxml
copying src\lxml\doctestcompare.py -> build\lib.win32-3.5\lxml
copying src\lxml\ElementInclude.py -> build\lib.win32-3.5\lxml
copying src\lxml\pyclasslookup.py -> build\lib.win32-3.5\lxml
copying src\lxml\sax.py -> build\lib.win32-3.5\lxml
copying src\lxml\usedoctest.py -> build\lib.win32-3.5\lxml
copying src\lxml\_elementpath.py -> build\lib.win32-3.5\lxml
copying src\lxml\__init__.py -> build\lib.win32-3.5\lxml
creating build\lib.win32-3.5\lxml\includes
copying src\lxml\includes\__init__.py -> build\lib.win32-3.5\lxml\includes
creating build\lib.win32-3.5\lxml\html
copying src\lxml\html\builder.py -> build\lib.win32-3.5\lxml\html
copying src\lxml\html\clean.py -> build\lib.win32-3.5\lxml\html
copying src\lxml\html\defs.py -> build\lib.win32-3.5\lxml\html
copying src\lxml\html\diff.py -> build\lib.win32-3.5\lxml\html
copying src\lxml\html\ElementSoup.py -> build\lib.win32-3.5\lxml\html
copying src\lxml\html\formfill.py -> build\lib.win32-3.5\lxml\html
copying src\lxml\html\html5parser.py -> build\lib.win32-3.5\lxml\html
copying src\lxml\html\soupparser.py -> build\lib.win32-3.5\lxml\html
copying src\lxml\html\usedoctest.py -> build\lib.win32-3.5\lxml\html
copying src\lxml\html\_diffcommand.py -> build\lib.win32-3.5\lxml\html
copying src\lxml\html\_html5builder.py -> build\lib.win32-3.5\lxml\html
copying src\lxml\html\_setmixin.py -> build\lib.win32-3.5\lxml\html
copying src\lxml\html\__init__.py -> build\lib.win32-3.5\lxml\html
creating build\lib.win32-3.5\lxml\isoschematron
copying src\lxml\isoschematron\__init__.py -> build\lib.win32-3.5\lxml\isosc hematron
copying src\lxml\lxml.etree.h -> build\lib.win32-3.5\lxml
copying src\lxml\lxml.etree_api.h -> build\lib.win32-3.5\lxml
copying src\lxml\includes\c14n.pxd -> build\lib.win32-3.5\lxml\includes
copying src\lxml\includes\config.pxd -> build\lib.win32-3.5\lxml\includes
copying src\lxml\includes\dtdvalid.pxd -> build\lib.win32-3.5\lxml\includes
copying src\lxml\includes\etreepublic.pxd -> build\lib.win32-3.5\lxml\includ es
copying src\lxml\includes\htmlparser.pxd -> build\lib.win32-3.5\lxml\include s
copying src\lxml\includes\relaxng.pxd -> build\lib.win32-3.5\lxml\includes
copying src\lxml\includes\schematron.pxd -> build\lib.win32-3.5\lxml\include s
copying src\lxml\includes\tree.pxd -> build\lib.win32-3.5\lxml\includes
copying src\lxml\includes\uri.pxd -> build\lib.win32-3.5\lxml\includes
copying src\lxml\includes\xinclude.pxd -> build\lib.win32-3.5\lxml\includes
copying src\lxml\includes\xmlerror.pxd -> build\lib.win32-3.5\lxml\includes
copying src\lxml\includes\xmlparser.pxd -> build\lib.win32-3.5\lxml\includes
copying src\lxml\includes\xmlschema.pxd -> build\lib.win32-3.5\lxml\includes
copying src\lxml\includes\xpath.pxd -> build\lib.win32-3.5\lxml\includes
copying src\lxml\includes\xslt.pxd -> build\lib.win32-3.5\lxml\includes
copying src\lxml\includes\etree_defs.h -> build\lib.win32-3.5\lxml\includes
copying src\lxml\includes\lxml-version.h -> build\lib.win32-3.5\lxml\include s
creating build\lib.win32-3.5\lxml\isoschematron\resources
creating build\lib.win32-3.5\lxml\isoschematron\resources\rng
copying src\lxml\isoschematron\resources\rng\iso-schematron.rng -> build\lib .win32-3.5\lxml\isoschematron\resources\rng
creating build\lib.win32-3.5\lxml\isoschematron\resources\xsl
copying src\lxml\isoschematron\resources\xsl\RNG2Schtrn.xsl -> build\lib.win 32-3.5\lxml\isoschematron\resources\xsl
copying src\lxml\isoschematron\resources\xsl\XSD2Schtrn.xsl -> build\lib.win 32-3.5\lxml\isoschematron\resources\xsl
creating build\lib.win32-3.5\lxml\isoschematron\resources\xsl\iso-schematron
-xslt1
copying src\lxml\isoschematron\resources\xsl\iso-schematron-xslt1\iso_abstra ct_expand.xsl -> build\lib.win32-3.5\lxml\isoschematron\resources\xsl\iso-schema tron-xslt1
copying src\lxml\isoschematron\resources\xsl\iso-schematron-xslt1\iso_dsdl_i nclude.xsl -> build\lib.win32-3.5\lxml\isoschematron\resources\xsl\iso-schematro n-xslt1
copying src\lxml\isoschematron\resources\xsl\iso-schematron-xslt1\iso_schema tron_message.xsl -> build\lib.win32-3.5\lxml\isoschematron\resources\xsl\iso-sch ematron-xslt1
copying src\lxml\isoschematron\resources\xsl\iso-schematron-xslt1\iso_schema tron_skeleton_for_xslt1.xsl -> build\lib.win32-3.5\lxml\isoschematron\resources\ xsl\iso-schematron-xslt1
copying src\lxml\isoschematron\resources\xsl\iso-schematron-xslt1\iso_svrl_f or_xslt1.xsl -> build\lib.win32-3.5\lxml\isoschematron\resources\xsl\iso-schemat ron-xslt1
copying src\lxml\isoschematron\resources\xsl\iso-schematron-xslt1\readme.txt
-> build\lib.win32-3.5\lxml\isoschematron\resources\xsl\iso-schematron-xslt1
running build_ext
building 'lxml.etree' extension
creating build\temp.win32-3.5
creating build\temp.win32-3.5\Release
creating build\temp.win32-3.5\Release\src
creating build\temp.win32-3.5\Release\src\lxml
C:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\BIN\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MD -Isrc\lxml\includes
-Ic:\python\include -Ic:\python\in clude "-IC:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\INCLUDE" "-IC:\P rogram Files (x86)\Windows Kits\10\include\10.0.10240.0\ucrt" "-IC:\Program File s (x86)\Windows Kits\8.1\include\shared" "-IC:\Program Files (x86)\Windows Kits\
8.1\include\um" "-IC:\Program Files (x86)\Windows Kits\8.1\include\winrt" /Tcsrc \lxml\lxml.etree.c /Fobuild\temp.win32-3.5\Release\src\lxml\lxml.etree.obj -w
cl : Command line warning D9025 : overriding '/W3' with '/w'
lxml.etree.c
src\lxml\includes\etree_defs.h(14): fatal error C1083: Cannot open include f ile: 'libxml/xmlversion.h': No such file or directory
Compile failed: command 'C:\\Program Files (x86)\\Microsoft Visual Studio 14 .0\\VC\\BIN\\cl.exe' failed with exit status 2
creating Users
creating Users\jgarber
creating Users\jgarber\AppData
creating Users\jgarber\AppData\Local
creating Users\jgarber\AppData\Local\Temp
C:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\BIN\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MD -I/usr/include/libxml2 "-IC:\Program Files (x86)\Micro soft Visual Studio 14.0\VC\INCLUDE" "-IC:\Program Files (x86)\Windows Kits\10\in clude\10.0.10240.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\8.1\include\shar ed" "-IC:\Program Files (x86)\Windows Kits\8.1\include\um" "-IC:\Program Files ( x86)\Windows Kits\8.1\include\winrt" /TcC:\Users\jgarber\AppData\Local\Temp\xmlX PathInit_qrahzea.c /FoUsers\jgarber\AppData\Local\Temp\xmlXPathInit_qrahzea.obj
xmlXPathInit_qrahzea.c
C:\Users\jgarber\AppData\Local\Temp\xmlXPathInit_qrahzea.c(1): fatal error C 1083: Cannot open include file: 'libxml/xpath.h': No such file or directory
****************************************************************************
*****
Could not find function xmlCheckVersion in library libxml2. Is libxml2 insta lled?
****************************************************************************
*****
error: command 'C:\\Program Files (x86)\\Microsoft Visual Studio 14.0\\VC\\B IN\\cl.exe' failed with exit status 2
---------------------------------------- Command "c:\python\python.exe -u -c "import setuptools, tokenize;__file__='C:\\U sers\\jgarber\\AppData\\Local\\Temp\\pip-build-bypbiu8j\\lxml\\setup.py';exec(co mpile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __ file__, 'exec'))" install --record C:\Users\jgarber\AppData\Local\Temp\pip-j8svs de4-record\install-record.txt --single-version-externally-managed
--compile" fai led with error code 1 in C:\Users\jgarber\AppData\Local\Temp\pip-build-bypbiu8j\ lxml\
I have also tried downloading the .whl from http://www.lfd.uci.edu/~gohlke/pythonlibs/#lxml and attempted to manually install the wheel but receive this error message:
C:\Users\jgarber\Downloads>pip install lxml-3.6.4-cp35-cp35m-win_amd64.whl
lxml-3.6.4-cp35-cp35m-win_amd64.whl is not a supported wheel on this platform.
even with the python -m pip install statement.
At this point I'm not sure what I'm missing, any help would be greatly appreciated.
By default, Python will install as 32-bit on Windows, even on 64-bit systems. Therefore, to match this, you must select the wheel for 32-bit systems.
You can verify that your Python interpreter is 32-bit, because the REPL will look like this when starting:
Python 3.5.2 (v3.5.2:4def2a2901a5, Jun 25 2016, 22:01:18) [MSC v.1900 32 bit (Intel)] on win32
You should pick the lxml-3.6.4-cp35-cp35m-win32.whl package for Python 3.5 on Windows (unless you explicitly selected 64-bit when downloading Python) which should solve your issue.
They fixed this issue as of lxml version 4.2.5.
If you are still getting this issue, see if your requirements file specifies a specific version of lxml. If so, you should be able to fix the problem by updating the specified version to 4.2.5 or above.
Related
I am on WSL2 in VS Code. Using Zsh on VS Code.
I am trying to install pythonnet though am getting two errors:
ERROR: Failed building wheel for pythonnet
error: option --single-version-externally-managed not recognized
This is from using pip install pythonnet==2.5.2
My versions are:
Python 3.8.10
Wheel 0.37.0
Mono: 6.8.0.105
pycparser 2.20
I have searched high and low online though I can't find a solution - everything seems to point to updating wheel and installing mono - as you can see from the above version numbers, I have them installed.
I am doing everything from within a virtual env.
Does anyone have any experience with this or know what to do to get past these errors?
Full log:
~/j/s/stx1alpha-signals/d/backend on master !6 ?1 ❯ pip install
pythonnet==2.5.2
stx1alpha at 10:52:05 AM Collecting pythonnet==2.5.2 Using cached
pythonnet-2.5.2.tar.gz (1.9 MB) Preparing metadata (setup.py) ...
done Requirement already satisfied: pycparser in
/home/jessica-ryan/jessica-ryan/stx1alpha/.venv/lib/python3.8/site-packages
(from pythonnet==2.5.2) (2.20) Building wheels for collected packages:
pythonnet Building wheel for pythonnet (setup.py) ... error ERROR:
Command errored out with exit status 1: command:
/home/jessica-ryan/jessica-ryan/stx1alpha/.venv/bin/python -u -c
'import io, os, sys, setuptools, tokenize; sys.argv[0] =
'"'"'/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/setup.py'"'"';
file='"'"'/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/setup.py'"'"';f
= getattr(tokenize, '"'"'open'"'"', open)(file) if os.path.exists(file) else io.StringIO('"'"'from setuptools import
setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"',
'"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))'
bdist_wheel -d /tmp/pip-wheel-789kx5l4
cwd: /tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/
Complete output (153 lines): running bdist_wheel running build
running build_ext Checking for updates from
https://www.nuget.org/api/v2/. Currently running NuGet.exe 4.1.0.
Updating NuGet.exe to 5.11.0. Update successful. MSBuild
auto-detection: using msbuild version '14.0' from
'/usr/lib/mono/xbuild/14.0/bin'.
xbuild tool is deprecated and will be removed in future updates, use msbuild instead <<<<
MSBUILD: error MSBUILD0004: Too many project files specified
WARNING: Error reading msbuild project information, ensure that your input solution or project file is valid. NETCore and UAP projects
will be skipped, only packages.config files will be restored.
Restoring NuGet package System.ValueTuple.4.5.0. Restoring NuGet
package NUnit.ConsoleRunner.3.11.1. Restoring NuGet package
NUnit.3.12.0. Restoring NuGet package UnmanagedExports.1.2.7.
Adding package 'NUnit.3.12.0' to folder
'/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/packages' Adding package 'System.ValueTuple.4.5.0' to folder
'/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/packages' Adding package 'UnmanagedExports.1.2.7' to folder
'/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/packages' Adding package 'NUnit.ConsoleRunner.3.11.1' to folder
'/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/packages' Added package 'UnmanagedExports.1.2.7' to folder
'/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/packages' Added package 'System.ValueTuple.4.5.0' to folder
'/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/packages' Added package 'NUnit.ConsoleRunner.3.11.1' to folder
'/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/packages' Added package 'NUnit.3.12.0' to folder
'/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/packages'
NuGet Config files used:
/home/jessica-ryan/.config/NuGet/NuGet.Config
Feeds used:
/home/jessica-ryan/.nuget/packages/
https://api.nuget.org/v3/index.json
Installed:
4 package(s) to packages.config projects
xbuild tool is deprecated and will be removed in future updates, use msbuild instead <<<<
XBuild Engine Version 14.0 Mono, Version 6.8.0.105 Copyright (C) 2005-2013 Various Mono authors
Build started 11/18/2021 10:53:28. __________________________________________________ Project "/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/pythonnet.sln"
(Clean target(s)):
Target ValidateSolutionConfiguration:
Building solution configuration "ReleaseMono|x64".
Target Clean:
Project "/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/src/runtime/Python.Runtime.csproj"
(Clean target(s)):
Target CoreClean:
Deleting file '/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/src/runtime/obj/x64/ReleaseMono/.NETFramework,Version=v4.0.AssemblyAttribute.cs'
Done building project "/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/src/runtime/Python.Runtime.csproj".
The project 'clrmodule' is disabled for solution configuration 'ReleaseMono|x64'.
Project "/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/src/testing/Python.Test.csproj"
(Clean target(s)):
Target CoreClean:
Deleting file '/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/src/testing/obj/x64/ReleaseMono/.NETFramework,Version=v4.0.AssemblyAttribute.cs'
Done building project "/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/src/testing/Python.Test.csproj".
Project "/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/src/embed_tests/Python.EmbeddingTest.csproj"
(Clean target(s)):
Target CoreClean:
Deleting file '/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/src/embed_tests/obj/x64/ReleaseMono/.NETFramework,Version=v4.0.AssemblyAttribute.cs'
Done building project "/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/src/embed_tests/Python.EmbeddingTest.csproj".
Project "/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/src/console/Console.csproj"
(Clean target(s)):
Target CoreClean:
Deleting file '/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/src/console/obj/x64/ReleaseMono/.NETFramework,Version=v4.0.AssemblyAttribute.cs'
Done building project "/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/src/console/Console.csproj".
Done building project
"/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/pythonnet.sln".
Build succeeded.
0 Warning(s)
0 Error(s)
Time Elapsed 00:00:00.3407830
xbuild tool is deprecated and will be removed in future updates, use msbuild instead <<<<
XBuild Engine Version 14.0 Mono, Version 6.8.0.105 Copyright (C) 2005-2013 Various Mono authors
Build started 11/18/2021 10:53:29. __________________________________________________ Project "/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/pythonnet.sln"
(Build target(s)):
Target ValidateSolutionConfiguration:
Building solution configuration "ReleaseMono|x64".
Target Build:
Project "/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/src/runtime/Python.Runtime.csproj"
(default target(s)):
Target PrepareForBuild:
Configuration: ReleaseMono Platform: x64
Created directory "bin/"
Target GenerateSatelliteAssemblies:
No input files were specified for target GenerateSatelliteAssemblies, skipping.
Target CoreCompile:
Tool /usr/lib/mono/4.5/mcs.exe execution started with arguments: /noconfig /debug:pdbonly /optimize+
/out:obj/x64/ReleaseMono/Python.Runtime.dll
/resource:obj/x64/ReleaseMono/Python.Runtime.resources.clr.py,clr.py
Codecs/EncoderGroup.cs Codecs/DecoderGroup.cs
Codecs/RawProxyEncoder.cs Codecs/TupleCodecs.cs converterextensions.cs
finalizer.cs Properties/AssemblyInfo.cs ../SharedAssemblyInfo.cs
arrayobject.cs assemblymanager.cs BorrowedReference.cs classderived.cs
classbase.cs classmanager.cs classobject.cs clrobject.cs
codegenerator.cs constructorbinder.cs constructorbinding.cs
converter.cs CustomMarshaler.cs debughelper.cs delegatemanager.cs
delegateobject.cs eventbinding.cs eventobject.cs exceptions.cs
extensiontype.cs fieldobject.cs generictype.cs genericutil.cs
importhook.cs indexer.cs interfaceobject.cs interfaces.cs interop.cs
iterator.cs managedtype.cs metatype.cs methodbinder.cs
methodbinding.cs methodobject.cs methodwrapper.cs
modulefunctionobject.cs moduleobject.cs modulepropertyobject.cs
nativecall.cs NewReference.cs NonCopyableAttribute.cs overload.cs
propertyobject.cs pyansistring.cs pydict.cs PyExportAttribute.cs
pyfloat.cs pyint.cs pyiter.cs pylist.cs pylong.cs pynumber.cs
pyobject.cs pyscope.cs pysequence.cs pystring.cs pythonengine.cs
pythonexception.cs pytuple.cs ReferenceExtensions.cs runtime.cs
typemanager.cs typemethod.cs Util.cs platform/Types.cs
platform/LibraryLoader.cs polyfill/ReflectionPolifills.cs
slots/mp_length.cs interop38.cs
obj/x64/ReleaseMono/.NETFramework,Version=v4.0.AssemblyAttribute.cs
/target:library /unsafe+
/define:"PYTHON38;PYTHON3;UCS4;MONO_LINUX;PYTHON_WITHOUT_ENABLE_SHARED"
/nowarn:1591 /doc:bin/Python.Runtime.xml /langversion:7.3 /nostdlib
/reference:/usr/lib/mono/4.0-api/System.dll
/reference:/usr/lib/mono/4.0-api/System.Core.dll
/reference:/usr/lib/mono/4.0-api//mscorlib.dll CSC: error CS1617:
Invalid -langversion option 7.3'. It must be ISO-1', `ISO-2',
Default, Latest or value in range 1 to 7.2
Task "Csc" execution -- FAILED
Done building target "CoreCompile" in project "/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/src/runtime/Python.Runtime.csproj".--
FAILED
Done building project "/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/src/runtime/Python.Runtime.csproj".--
FAILED
Task "MSBuild" execution -- FAILED
Done building target "Build" in project "/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/pythonnet.sln".-- FAILED Done building project
"/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/pythonnet.sln".-- FAILED
Build FAILED. Errors:
/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/pythonnet.sln
(Build) -> (Build target) ->
/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/src/runtime/Python.Runtime.csproj
(default targets) ->
/usr/lib/mono/xbuild/14.0/bin/Microsoft.CSharp.targets (CoreCompile
target) ->
CSC: error CS1617: Invalid -langversion option `7.3'. It must be `ISO-1', `ISO-2', Default, Latest or value in range 1 to 7.2
0 Warning(s)
1 Error(s)
Time Elapsed 00:00:00.3647620 Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/setup.py",
line 630, in
setup(
File "/home/jessica-ryan/jessica-ryan/stx1alpha/.venv/lib/python3.8/site-packages/setuptools/init.py",
line 153, in setup
return distutils.core.setup(**attrs)
File "/usr/lib/python3.8/distutils/core.py", line 148, in setup
dist.run_commands()
File "/usr/lib/python3.8/distutils/dist.py", line 966, in run_commands
self.run_command(cmd)
File "/usr/lib/python3.8/distutils/dist.py", line 985, in run_command
cmd_obj.run()
File "/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/setup.py",
line 612, in run
return bdist_wheel.bdist_wheel.run(self)
File "/home/jessica-ryan/jessica-ryan/stx1alpha/.venv/lib/python3.8/site-packages/wheel/bdist_wheel.py",
line 299, in run
self.run_command('build')
File "/usr/lib/python3.8/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/usr/lib/python3.8/distutils/dist.py", line 985, in run_command
cmd_obj.run()
File "/usr/lib/python3.8/distutils/command/build.py", line 135, in run
self.run_command(cmd_name)
File "/usr/lib/python3.8/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/usr/lib/python3.8/distutils/dist.py", line 985, in run_command
cmd_obj.run()
File "/usr/lib/python3.8/distutils/command/build_ext.py", line 340, in run
self.build_extensions()
File "/usr/lib/python3.8/distutils/command/build_ext.py", line 449, in build_extensions
self._build_extensions_serial()
File "/usr/lib/python3.8/distutils/command/build_ext.py", line 474, in _build_extensions_serial
self.build_extension(ext)
File "/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/setup.py",
line 353, in build_extension
subprocess.check_call(" ".join(cmd + ["/t:Build"]), shell=use_shell)
File "/usr/lib/python3.8/subprocess.py", line 364, in check_call
raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command 'xbuild pythonnet.sln
/p:Configuration=ReleaseMono /p:Platform=x64
/p:DefineConstants="PYTHON38%3BPYTHON3%3BUCS4%3BMONO_LINUX%3BPYTHON_WITHOUT_ENABLE_SHARED"
/p:PythonBuildDir="/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/build/lib.linux-x86_64-3.8"
/p:PythonInteropFile="interop38.cs" /p:PackageId=pythonnet_py38_x64
/verbosity:normal /t:Build' returned non-zero exit status 1.
---------------------------------------- ERROR: Failed building wheel for pythonnet Running setup.py clean for pythonnet Failed to
build pythonnet Installing collected packages: pythonnet
Running setup.py install for pythonnet ... error
ERROR: Command errored out with exit status 1:
command: /home/jessica-ryan/jessica-ryan/stx1alpha/.venv/bin/python -u -c
'import io, os, sys, setuptools, tokenize; sys.argv[0] =
'"'"'/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/setup.py'"'"';
file='"'"'/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/setup.py'"'"';f
= getattr(tokenize, '"'"'open'"'"', open)(file) if os.path.exists(file) else io.StringIO('"'"'from setuptools import
setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"',
'"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))'
install --record /tmp/pip-record-2fxmdkst/install-record.txt
--single-version-externally-managed --compile --install-headers /home/jessica-ryan/jessica-ryan/stx1alpha/.venv/include/site/python3.8/pythonnet
cwd: /tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/
Complete output (6 lines):
usage: setup.py [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
or: setup.py --help [cmd1 cmd2 ...]
or: setup.py --help-commands
or: setup.py cmd --help
error: option --single-version-externally-managed not recognized
---------------------------------------- ERROR: Command errored out with exit status 1:
/home/jessica-ryan/jessica-ryan/stx1alpha/.venv/bin/python -u -c
'import io, os, sys, setuptools, tokenize; sys.argv[0] =
'"'"'/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/setup.py'"'"';
file='"'"'/tmp/pip-install-mlymh9lo/pythonnet_eef24e9bf71f4dcdacdc5897c9504adf/setup.py'"'"';f
= getattr(tokenize, '"'"'open'"'"', open)(file) if os.path.exists(file) else io.StringIO('"'"'from setuptools import
setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"',
'"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))'
install --record /tmp/pip-record-2fxmdkst/install-record.txt
--single-version-externally-managed --compile --install-headers /home/jessica-ryan/jessica-ryan/stx1alpha/.venv/include/site/python3.8/pythonnet
Check the logs for full command output.
You need a newer version of Mono. The one you have does not support C# 7.3 that Pythonnet build needs.
I tried to install tensornets in my ubuntu anaconda environment but the message bellow appears.
I installed:
numpy 1.17.0,
tensoflow 1.14.0,
pandas 1.1.5,
opencv,
keras,
cmake,
dlib
$ pip install tensornets
collecting tensornets
Using cached tensornets-0.4.6.tar.gz (651 kB)
Installing build dependencies ... done
WARNING: Missing build requirements in pyproject.toml for tensornets from https://files.pythonhosted.org/packages/71/22/2c9402bbf142b94dc39d8a3c9884690ae87706a8bc1453d6cf0630525173/tensornets-0.4.6.tar.gz#sha256=e1095082b45a06168d56450d8c8fa49780d8aef8d4d1fcc64efceadb743f9ceb.
WARNING: The project does not specify a build backend, and pip cannot fall back to setuptools without 'wheel'.
Getting requirements to build wheel ... done
Installing backend dependencies ... done
Preparing wheel metadata ... done
Building wheels for collected packages: tensornets
Building wheel for tensornets (PEP 517) ... error
ERROR: Command errored out with exit status 1:
command: /home/mario/miniconda3/envs/VARVO_LINUX/bin/python /home/mario/miniconda3/envs/VARVO_LINUX/lib/python3.6/site-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmp2bm7gwnh
cwd: /tmp/pip-install-vupow4g5/tensornets_24fc2060cce2460b9b6417949ee1e6b6
Complete output (86 lines):
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.6
creating build/lib.linux-x86_64-3.6/tensornets
copying tensornets/utils.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/unet.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/inceptions.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/densenets.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/preprocess.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/capsulenets.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/tnets.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/resnets.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/nasnets.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/init.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/middles.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/version_utils.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/squeezenets.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/vggs.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/darknets.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/zf.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/layers.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/pretrained.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/mobilenets.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/ops.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/detections.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/efficientnets.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/wavenets.py -> build/lib.linux-x86_64-3.6/tensornets
creating build/lib.linux-x86_64-3.6/tensornets/datasets
copying tensornets/datasets/init.py -> build/lib.linux-x86_64-3.6/tensornets/datasets
copying tensornets/datasets/imagenet.py -> build/lib.linux-x86_64-3.6/tensornets/datasets
copying tensornets/datasets/voc.py -> build/lib.linux-x86_64-3.6/tensornets/datasets
copying tensornets/datasets/coco.py -> build/lib.linux-x86_64-3.6/tensornets/datasets
creating build/lib.linux-x86_64-3.6/tensornets/contrib_framework
copying tensornets/contrib_framework/init.py -> build/lib.linux-x86_64-3.6/tensornets/contrib_framework
copying tensornets/contrib_framework/arg_scope.py -> build/lib.linux-x86_64-3.6/tensornets/contrib_framework
copying tensornets/contrib_framework/variables.py -> build/lib.linux-x86_64-3.6/tensornets/contrib_framework
creating build/lib.linux-x86_64-3.6/tensornets/contrib_layers
copying tensornets/contrib_layers/utils.py -> build/lib.linux-x86_64-3.6/tensornets/contrib_layers
copying tensornets/contrib_layers/init.py -> build/lib.linux-x86_64-3.6/tensornets/contrib_layers
copying tensornets/contrib_layers/initializers.py -> build/lib.linux-x86_64-3.6/tensornets/contrib_layers
copying tensornets/contrib_layers/normalization.py -> build/lib.linux-x86_64-3.6/tensornets/contrib_layers
copying tensornets/contrib_layers/optimizers.py -> build/lib.linux-x86_64-3.6/tensornets/contrib_layers
copying tensornets/contrib_layers/layers.py -> build/lib.linux-x86_64-3.6/tensornets/contrib_layers
copying tensornets/contrib_layers/regularizers.py -> build/lib.linux-x86_64-3.6/tensornets/contrib_layers
copying tensornets/contrib_layers/summaries.py -> build/lib.linux-x86_64-3.6/tensornets/contrib_layers
copying tensornets/contrib_layers/rev_block_lib.py -> build/lib.linux-x86_64-3.6/tensornets/contrib_layers
creating build/lib.linux-x86_64-3.6/tensornets/references
copying tensornets/references/init.py -> build/lib.linux-x86_64-3.6/tensornets/references
copying tensornets/references/rcnns.py -> build/lib.linux-x86_64-3.6/tensornets/references
copying tensornets/references/yolo_utils.py -> build/lib.linux-x86_64-3.6/tensornets/references
copying tensornets/references/rpn_utils.py -> build/lib.linux-x86_64-3.6/tensornets/references
copying tensornets/references/yolos.py -> build/lib.linux-x86_64-3.6/tensornets/references
creating build/lib.linux-x86_64-3.6/tensornets/references/darkflow_utils
copying tensornets/references/darkflow_utils/init.py -> build/lib.linux-x86_64-3.6/tensornets/references/darkflow_utils
copying tensornets/references/darkflow_utils/box.py -> build/lib.linux-x86_64-3.6/tensornets/references/darkflow_utils
running egg_info
writing tensornets.egg-info/PKG-INFO
writing dependency_links to tensornets.egg-info/dependency_links.txt
writing top-level names to tensornets.egg-info/top_level.txt
reading manifest file 'tensornets.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'tensornets.egg-info/SOURCES.txt'
copying tensornets/datasets/coco.names -> build/lib.linux-x86_64-3.6/tensornets/datasets
copying tensornets/datasets/voc.names -> build/lib.linux-x86_64-3.6/tensornets/datasets
copying tensornets/references/coco.names -> build/lib.linux-x86_64-3.6/tensornets/references
copying tensornets/references/voc.names -> build/lib.linux-x86_64-3.6/tensornets/references
copying tensornets/references/darkflow_utils/init.pyc -> build/lib.linux-x86_64-3.6/tensornets/references/darkflow_utils
copying tensornets/references/darkflow_utils/box.pyc -> build/lib.linux-x86_64-3.6/tensornets/references/darkflow_utils
copying tensornets/references/darkflow_utils/get_boxes.c -> build/lib.linux-x86_64-3.6/tensornets/references/darkflow_utils
copying tensornets/references/darkflow_utils/get_boxes.pyx -> build/lib.linux-x86_64-3.6/tensornets/references/darkflow_utils
copying tensornets/references/darkflow_utils/get_boxes.so -> build/lib.linux-x86_64-3.6/tensornets/references/darkflow_utils
copying tensornets/references/darkflow_utils/nms.c -> build/lib.linux-x86_64-3.6/tensornets/references/darkflow_utils
copying tensornets/references/darkflow_utils/nms.pxd -> build/lib.linux-x86_64-3.6/tensornets/references/darkflow_utils
copying tensornets/references/darkflow_utils/nms.pyx -> build/lib.linux-x86_64-3.6/tensornets/references/darkflow_utils
copying tensornets/references/darkflow_utils/nms.so -> build/lib.linux-x86_64-3.6/tensornets/references/darkflow_utils
running build_ext
building 'tensornets.references.darkflow_utils.nms' extension
creating build/temp.linux-x86_64-3.6
creating build/temp.linux-x86_64-3.6/tensornets
creating build/temp.linux-x86_64-3.6/tensornets/references
creating build/temp.linux-x86_64-3.6/tensornets/references/darkflow_utils
gcc -pthread -B /home/mario/miniconda3/envs/VARVO_LINUX/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/tmp/pip-build-env-5o3ttz/overlay/lib/python3.6/site-packages/numpy/core/include -I/home/mario/miniconda3/envs/VARVO_LINUX/include/python3.6m -c tensornets/references/darkflow_utils/nms.c -o build/temp.linux-x86_64-3.6/tensornets/references/darkflow_utils/nms.o
error: command 'gcc' failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for tensornets
Failed to build tensornets
ERROR: Could not build wheels for tensornets which use PEP 517 and cannot be installed directly
The problem was in the gcc compiler
I followed this tutorial: https://linuxize.com/post/how-to-install-gcc-compiler-on-ubuntu-18-04/
In summary:
1.- Update
$sudo apt update
2.- Install build-essential
$sudo apt install build-essential
2.1.- Optional (documentation)
$sudo apt-get install manpages-dev
3.- Verify GCC compiler installation
$gcc --version
Operating on Windows 10.
I am trying to install Tensorflow within a conda environment. The Anaconda 3 version I am using is the one that can be installed from within Visual Studio, conda version number is 4.6.14.
I created a new environment with conda create -n test python=3.6 and afterwards tried to install Tensorflow:
> conda activate test
> (test) conda install tensorflow-gpu
after which I'm getting the following error:
Downloading and Extracting Packages
tensorflow-base-1.13 | 217.6 MB | ############################################################################ | 100%
[Errno 2] No such file or directory: 'C:\\Program Files (x86)\\Microsoft Visual Studio\\Shared\\Anaconda3_64\\pkgs\\tensorflow-base-1.13.1-gpu_py36h871c8ca_0\\Lib\\site-packages\\tensorflow\\include\\tensorflow\\include\\external\\eigen_archive\\unsupported\\Eigen\\src\\SpecialFunctions\\SpecialFunctionsPacketMath.h'
Any idea on what could be the error here?
Edit: conda info returned:
active environment : base
active env location : C:\Program Files (x86)\Microsoft Visual Studio\Shared\Anaconda3_64
shell level : 1
user config file : C:\Users\Me\.condarc
populated config files :
conda version : 4.6.14
conda-build version : 3.10.5
python version : 3.6.5.final.0
base environment : C:\Program Files (x86)\Microsoft Visual Studio\Shared\Anaconda3_64 (writable)
channel URLs : https://repo.anaconda.com/pkgs/main/win-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/free/win-64
https://repo.anaconda.com/pkgs/free/noarch
https://repo.anaconda.com/pkgs/r/win-64
https://repo.anaconda.com/pkgs/r/noarch
https://repo.anaconda.com/pkgs/msys2/win-64
https://repo.anaconda.com/pkgs/msys2/noarch
package cache : C:\Program Files (x86)\Microsoft Visual Studio\Shared\Anaconda3_64\pkgs
C:\Users\Me\.conda\pkgs
C:\Users\Me\AppData\Local\conda\conda\pkgs
envs directories : C:\Program Files (x86)\Microsoft Visual Studio\Shared\Anaconda3_64\envs
C:\Users\Me\.conda\envs
C:\Users\Me\AppData\Local\conda\conda\envs platform : win-64
user-agent : conda/4.6.14 requests/2.18.4 CPython/3.6.5 Windows/10 Windows/10.0.17134
administrator : True netrc file : None
offline mode : False
I have the same issue. Like you, I also did the convenient "mistake" of installing Anaconda with the Visual Studio installer. As James pointed out, the problem is indeed that the file path is too long (> 260). Anyway, it would seem we have to swallow the bitter pill, uninstall Anaconda and reinstall it at root level (I'll go for Mini-Conda this time).
Before I do that, I'll try to find a way of moving the Anaconda3_64\pkgs\ to a different location. Should that work, I'll post it here.
Edit: Got the solution, no reinstall necessary!
The problem comes from windows itself, which by default does not support long file paths. But this can be changed using a registry flag:
https://knowledge.autodesk.com/support/autocad/learn-explore/caas/sfdcarticles/sfdcarticles/The-Windows-10-default-path-length-limitation-MAX-PATH-is-256-characters.html
Open Regedit as Admin
HKEY_LOCAL_MACHINE\SYSTEM\CurrentControlSet\Control\FileSystem
Change LongPathsEnabled to 1 (DWORD 32 bit)
Warning: it could break compatibility of older programs. So far, for me everything is still working fine. If you should run into problems, simply revert the setting (and remember you have changed this setting!)
This is on 64-bit Windows 10 Pro with MSVC 2015. This question has a long body because I want to give full information up front, but the actual question is rather straightforward:
How can I get panda to keep the working directory around (like cpanmdoes) after an install failure so I can diagnose what went wrong?
As you can see from the log below, linenoise.dll seems to be created in the right place, but come install time, it is nowhere to be found.
The .panda-work directory in %TEMP% is gone.
I just built Rakudo from source by doing
git clone git://github.com/rakudo/rakudo.git
cd rakudo
set CFLAGS=/O2 /favor:INTEL64 /Qpar
perl Configure.pl --gen-moar --gen-nqp --backends=moar --prefix=c:/opt/perl6
nmake test
nmake install
nmake spectest ← The number of failures has gone up since the last time I tried this, but that's not related to my question
Then I installed panda by doing:
git clone --recursive git://github.com/tadzik/panda.git
cd panda
perl6 bootstrap.pl
which worked.
Then I did
panda install Task::Star
I got a test failure:
==> Building NativeHelpers::Blob
==> Testing NativeHelpers::Blob
t/00-trivial.t ..
Dubious, test returned 5 (wstat 1280, 0x500)
Failed 1/1 subtests
but I force installed that because I wanted to get to as complete an install as possible as quickly as possible.
So, forging ahead, I hit this:
C:\Users\...\Temp> panda install Linenoise
==> Fetching Linenoise
==> Building Linenoise
Microsoft (R) Program Maintenance Utility Version 14.00.24210.0
Copyright (C) Microsoft Corporation. All rights reserved.
cl -c /nologo /MT /Ox /GL /DNDEBUG /DWIN32 /DAO_ASSUME_WINDOWS98 /O2 /favor:INTEL64 /Qpar /Folinenoise.obj linenoise.c
linenoise.c
perl6 -e "mkdir 'resources'; mkdir 'resources/libraries'"
link /dll /nologo /LTCG shell32.lib ws2_32.lib mswsock.lib rpcrt4.lib advapi32.lib psapi.lib iphlpapi.lib userenv.lib /out:resources/libraries/libline
noise.dll linenoise.obj
Generating code
Finished generating code
cl /Foconstant-helper /nologo /MT /Ox /GL /DNDEBUG /DWIN32 /DAO_ASSUME_WINDOWS98 /O2 /favor:INTEL64 /Qpar constant-helper.c
constant-helper.c
Generating code
Finished generating code
perl6 fill-constants.pl lib/Linenoise.pm
==> Testing Linenoise
==> Installing Linenoise
Failed to open file C:\Users\...\Temp\.panda-work\1483278033_1\resources\libraries\linenoise.dll: no such file or directory
in any at C:\opt\perl6/share/perl6/runtime/CORE.setting.moarvm line 1
in block at C:\opt\perl6\share\perl6\site\sources\85367160D11E565B2D089507C79BC309215430D6 (Panda::Installer) line 61
in sub indir at C:\opt\perl6\share\perl6\site\sources\24811C576EF8F85E7672B26955C802BB2FC94675 (Panda::Common) line 20
in method install at C:\opt\perl6\share\perl6\site\sources\85367160D11E565B2D089507C79BC309215430D6 (Panda::Installer) line 42
in method install at C:\opt\perl6\share\perl6\site\sources\582CB7486602954A4601BDCE5A0EAC54B05DA58A (Panda) line 190
in method resolve at C:\opt\perl6\share\perl6\site\sources\582CB7486602954A4601BDCE5A0EAC54B05DA58A (Panda) line 263
in sub MAIN at C:\opt\perl6\share\perl6\site\resources\1C71F7B377C6F2C6C4707E3C25016AA25A2926B1 line 20
in block at C:\opt\perl6\share\perl6\site\resources\1C71F7B377C6F2C6C4707E3C25016AA25A2926B1 line 165
Actually thrown at:
in method throw at C:\opt\perl6/share/perl6/runtime/CORE.setting.moarvm line 1
in any at gen/moar/Metamodel.nqp line 3072
in block at C:\opt\perl6\share\perl6\site\sources\85367160D11E565B2D089507C79BC309215430D6 (Panda::Installer) line 61
in sub indir at C:\opt\perl6\share\perl6\site\sources\24811C576EF8F85E7672B26955C802BB2FC94675 (Panda::Common) line 20
in method install at C:\opt\perl6\share\perl6\site\sources\85367160D11E565B2D089507C79BC309215430D6 (Panda::Installer) line 42
in method install at C:\opt\perl6\share\perl6\site\sources\582CB7486602954A4601BDCE5A0EAC54B05DA58A (Panda) line 190
in method resolve at C:\opt\perl6\share\perl6\site\sources\582CB7486602954A4601BDCE5A0EAC54B05DA58A (Panda) line 263
in sub MAIN at C:\opt\perl6\share\perl6\site\resources\1C71F7B377C6F2C6C4707E3C25016AA25A2926B1 line 20
in block at C:\opt\perl6\share\perl6\site\resources\1C71F7B377C6F2C6C4707E3C25016AA25A2926B1 line 165
The Build.pm file for Linenoise is simply not written correctly. They are hard-coding the 'lib' prefix to the library name while also trying to use the platform library name guessing mechanism in another part. If it wants to use $*VM.platform-library-name then it needs to generate a file named linenoise.dll, not liblinenoise.dll
I'm also not sure that Linenoise works on windows even if it did install.
You should probably be using zef instead of panda. If you were, you could view the working directory used at ~/.zef/store/p6-linenoise.git
I can't manage to install biom format using pip install biom-format.
This is the error I get.
N85566:~ smitra$ pip install biom-format
Collecting biom-format
Using cached biom-format-2.1.5.tar.gz
Requirement already satisfied (use --upgrade to upgrade): click in /usr/local/lib/python2.7/site-packages (from biom-format)
Requirement already satisfied (use --upgrade to upgrade): numpy>=1.3.0 in /Library/Python/2.7/site-packages (from biom-format)
Requirement already satisfied (use --upgrade to upgrade): future>=0.14.3 in /usr/local/lib/python2.7/site-packages (from biom-format)
Collecting scipy>=0.13.0 (from biom-format)
Using cached scipy-0.17.0-cp27-none-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl
Collecting pyqi (from biom-format)
Building wheels for collected packages: biom-format
Running setup.py bdist_wheel for biom-format ... error
Complete output from command /usr/local/opt/python/bin/python2.7 -u -c "import setuptools, tokenize;__file__='/private/var/folders/w0/sg297rxj3738tghvhq3fhr5c0000gp/T/pip-build-TljllL/biom-format/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /var/folders/w0/sg297rxj3738tghvhq3fhr5c0000gp/T/tmpmTturCpip-wheel- --python-tag cp27:
running bdist_wheel
running build
running build_py
creating build
creating build/lib.macosx-10.10-x86_64-2.7
creating build/lib.macosx-10.10-x86_64-2.7/biom
copying biom/__init__.py -> build/lib.macosx-10.10-x86_64-2.7/biom
copying biom/err.py -> build/lib.macosx-10.10-x86_64-2.7/biom
copying biom/exception.py -> build/lib.macosx-10.10-x86_64-2.7/biom
copying biom/parse.py -> build/lib.macosx-10.10-x86_64-2.7/biom
copying biom/table.py -> build/lib.macosx-10.10-x86_64-2.7/biom
copying biom/util.py -> build/lib.macosx-10.10-x86_64-2.7/biom
creating build/lib.macosx-10.10-x86_64-2.7/tests
copying tests/__init__.py -> build/lib.macosx-10.10-x86_64-2.7/tests
copying tests/test_err.py -> build/lib.macosx-10.10-x86_64-2.7/tests
copying tests/test_parse.py -> build/lib.macosx-10.10-x86_64-2.7/tests
copying tests/test_table.py -> build/lib.macosx-10.10-x86_64-2.7/tests
copying tests/test_util.py -> build/lib.macosx-10.10-x86_64-2.7/tests
creating build/lib.macosx-10.10-x86_64-2.7/biom/cli
copying biom/cli/__init__.py -> build/lib.macosx-10.10-x86_64-2.7/biom/cli
copying biom/cli/installation_informer.py -> build/lib.macosx-10.10-x86_64-2.7/biom/cli
copying biom/cli/metadata_adder.py -> build/lib.macosx-10.10-x86_64-2.7/biom/cli
copying biom/cli/table_converter.py -> build/lib.macosx-10.10-x86_64-2.7/biom/cli
copying biom/cli/table_head.py -> build/lib.macosx-10.10-x86_64-2.7/biom/cli
copying biom/cli/table_normalizer.py -> build/lib.macosx-10.10-x86_64-2.7/biom/cli
copying biom/cli/table_subsetter.py -> build/lib.macosx-10.10-x86_64-2.7/biom/cli
copying biom/cli/table_summarizer.py -> build/lib.macosx-10.10-x86_64-2.7/biom/cli
copying biom/cli/table_validator.py -> build/lib.macosx-10.10-x86_64-2.7/biom/cli
copying biom/cli/uc_processor.py -> build/lib.macosx-10.10-x86_64-2.7/biom/cli
copying biom/cli/util.py -> build/lib.macosx-10.10-x86_64-2.7/biom/cli
creating build/lib.macosx-10.10-x86_64-2.7/tests/test_cli
copying tests/test_cli/__init__.py -> build/lib.macosx-10.10-x86_64-2.7/tests/test_cli
copying tests/test_cli/test_add_metadata.py -> build/lib.macosx-10.10-x86_64-2.7/tests/test_cli
copying tests/test_cli/test_show_install_info.py -> build/lib.macosx-10.10-x86_64-2.7/tests/test_cli
copying tests/test_cli/test_subset_table.py -> build/lib.macosx-10.10-x86_64-2.7/tests/test_cli
copying tests/test_cli/test_summarize_table.py -> build/lib.macosx-10.10-x86_64-2.7/tests/test_cli
copying tests/test_cli/test_table_converter.py -> build/lib.macosx-10.10-x86_64-2.7/tests/test_cli
copying tests/test_cli/test_table_normalizer.py -> build/lib.macosx-10.10-x86_64-2.7/tests/test_cli
copying tests/test_cli/test_uc_processor.py -> build/lib.macosx-10.10-x86_64-2.7/tests/test_cli
copying tests/test_cli/test_validate_table.py -> build/lib.macosx-10.10-x86_64-2.7/tests/test_cli
running egg_info
writing requirements to biom_format.egg-info/requires.txt
writing biom_format.egg-info/PKG-INFO
writing top-level names to biom_format.egg-info/top_level.txt
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
warning: manifest_maker: standard file '-c' not found
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
writing manifest file 'biom_format.egg-info/SOURCES.txt'
copying biom/_filter.c -> build/lib.macosx-10.10-x86_64-2.7/biom
copying biom/_filter.pyx -> build/lib.macosx-10.10-x86_64-2.7/biom
copying biom/_subsample.c -> build/lib.macosx-10.10-x86_64-2.7/biom
copying biom/_subsample.pyx -> build/lib.macosx-10.10-x86_64-2.7/biom
copying biom/_transform.c -> build/lib.macosx-10.10-x86_64-2.7/biom
copying biom/_transform.pyx -> build/lib.macosx-10.10-x86_64-2.7/biom
running build_ext
building 'biom._filter' extension
creating build/temp.macosx-10.10-x86_64-2.7
creating build/temp.macosx-10.10-x86_64-2.7/biom
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -arch x86_64 -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c biom/_filter.c -o build/temp.macosx-10.10-x86_64-2.7/biom/_filter.o
biom/_filter.c:258:10: fatal error: 'numpy/arrayobject.h' file not found
#include "numpy/arrayobject.h"
^
1 error generated.
error: command 'clang' failed with exit status 1
----------------------------------------
Failed building wheel for biom-format
Running setup.py clean for biom-format
Failed to build biom-format
Installing collected packages: scipy, pyqi, biom-format
Found existing installation: scipy 0.12.0
Uninstalling scipy-0.12.0:
Exception:
Traceback (most recent call last):
File "/usr/local/lib/python2.7/site-packages/pip/basecommand.py", line 209, in main
status = self.run(options, args)
File "/usr/local/lib/python2.7/site-packages/pip/commands/install.py", line 317, in run
prefix=options.prefix_path,
File "/usr/local/lib/python2.7/site-packages/pip/req/req_set.py", line 726, in install
requirement.uninstall(auto_confirm=True)
File "/usr/local/lib/python2.7/site-packages/pip/req/req_install.py", line 746, in uninstall
paths_to_remove.remove(auto_confirm)
File "/usr/local/lib/python2.7/site-packages/pip/req/req_uninstall.py", line 115, in remove
renames(path, new_path)
File "/usr/local/lib/python2.7/site-packages/pip/utils/__init__.py", line 267, in renames
shutil.move(old, new)
File "/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 300, in move
rmtree(src)
File "/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 252, in rmtree
onerror(os.remove, fullname, sys.exc_info())
File "/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 250, in rmtree
os.remove(fullname)
OSError: [Errno 13] Permission denied: '/Library/Python/2.7/site-packages/scipy-0.12.0-py2.7.egg-info/dependency_links.txt'
N85566:~ smitra$
============
Another matter,
I tried to update numpy, which seems worked..but still shows me the earlier version. This is what I did.
=========
N85566:~ smitra$ pip install numpy --upgrade
Collecting numpy
Downloading numpy-1.11.0-cp27-cp27m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl (3.9MB)
100% |████████████████████████████████| 3.9MB 347kB/s
Installing collected packages: numpy
Found existing installation: numpy 1.7.1
Uninstalling numpy-1.7.1:
Exception:
Traceback (most recent call last):
File "/usr/local/lib/python2.7/site-packages/pip/basecommand.py", line 209, in main
status = self.run(options, args)
File "/usr/local/lib/python2.7/site-packages/pip/commands/install.py", line 317, in run
prefix=options.prefix_path,
File "/usr/local/lib/python2.7/site-packages/pip/req/req_set.py", line 726, in install
requirement.uninstall(auto_confirm=True)
File "/usr/local/lib/python2.7/site-packages/pip/req/req_install.py", line 746, in uninstall
paths_to_remove.remove(auto_confirm)
File "/usr/local/lib/python2.7/site-packages/pip/req/req_uninstall.py", line 115, in remove
renames(path, new_path)
File "/usr/local/lib/python2.7/site-packages/pip/utils/__init__.py", line 267, in renames
shutil.move(old, new)
File "/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 300, in move
rmtree(src)
File "/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 252, in rmtree
onerror(os.remove, fullname, sys.exc_info())
File "/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 250, in rmtree
os.remove(fullname)
OSError: [Errno 13] Permission denied: '/Library/Python/2.7/site-packages/numpy-1.7.1-py2.7.egg-info/dependency_links.txt'
N85566:~ smitra$
N85566:~ smitra$ python -c "import numpy; print numpy.version.version"
1.7.1
N85566:~ smitra$
==========
Any problem with PATH might be??
Please help me to fix this issue. Thanks, Mitra
I also had the same problem.
try this command:
sudo pip install -Iv https://pypi.python.org/packages/source/b/biom-format/biom-format-1.3.0.tar.gz#md5=bd35f9b7e1c7daf244fe2dffb2777606
hope to be helpful.
Adrian