LogException: LOG003: Read failure At GlassFish - glassfish

Can anyone help with this error?
I'm using GlassFish Open Source Edition 3.1
[#|2016-04-17T01:58:16.116+0900|SEVERE|glassfish3.1.1|javax.enterprise.system.core.transaction.com.sun.jts.CosTransactions|_ThreadID=20;_ThreadName=Thread-2;|JTS5022: Unexpected exception [{0}] from log.
com.sun.jts.CosTransactions.LogException: LOG003: Read failure. Log exception at point 14.
at com.sun.jts.CosTransactions.LogControl.openFile(LogControl.java:579)
at com.sun.jts.CosTransactions.Log.open(Log.java:223)
at com.sun.jts.CosTransactions.CoordinatorLog.openLog(CoordinatorLog.java:1163)
at com.sun.jts.CosTransactions.CoordinatorLog.formatLogRecords(CoordinatorLog.java:1042)
at com.sun.jts.CosTransactions.CoordinatorLog.write(CoordinatorLog.java:536)
at com.sun.jts.CosTransactions.TransactionState.setState(TransactionState.java:752)
at com.sun.jts.CosTransactions.TopCoordinator.prepare(TopCoordinator.java:2000)
at com.sun.jts.CosTransactions.CoordinatorTerm.commit(CoordinatorTerm.java:357)
at com.sun.jts.CosTransactions.TerminatorImpl.commit(TerminatorImpl.java:250)
at com.sun.jts.CosTransactions.CurrentImpl.commit(CurrentImpl.java:623)
at com.sun.jts.jta.TransactionManagerImpl.commit(TransactionManagerImpl.java:323)
at com.sun.enterprise.transaction.jts.JavaEETransactionManagerJTSDelegate.commitDistributedTransaction(JavaEETransactionManagerJTSDelegate.java:186)
at com.sun.enterprise.transaction.JavaEETransactionManagerSimplified.commit(JavaEETransactionManagerSimplified.java:858)
at com.sun.ejb.containers.BaseContainer.completeNewTx(BaseContainer.java:5114)
at com.sun.ejb.containers.BaseContainer.postInvokeTx(BaseContainer.java:4879)
at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2039)
at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:1990)
at com.sun.ejb.containers.EJBObjectInvocationHandler.invoke(EJBObjectInvocationHandler.java:213)
at com.sun.ejb.containers.EJBObjectInvocationHandlerDelegate.invoke(EJBObjectInvocationHandlerDelegate.java:79)

Old question, but the following did fix it for us:
Stop the glassfish server
Do backup the following directory: domain_directory\logs\server\tx
Do cleanup the following directory: domain_directory\logs\server\tx
Restart the glassfish server
I hope this helps someone.

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No valid license found for ILOG JViews Diagrammer 6.5

Recently we moved our Business-Application from weblogic to wildFly server after we are unable to view the rule-Flow(flowChart) and getting the error when we try to view
No valid license found for ILOG JViews Diagrammer 6.5
Reason: Application 'ILOG JRules': File 'keys.jlm' not found
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if anyone knows the fix , please let me know.
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GraphDB Workbench would not start

After a VM shutdown, GraphDB Workbench would not start.
I have installed GraphDB on a cloud-hosted VM. Incidentally, the machine was shut down without stopping GraphDB. When trying to start it again, the Workbench would not start and the following message is displayed in the error log.
[ERROR] 2019-06-19 12:12:00,299 [Thread-10 | c.o.t.s.i.PluginManager]
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com.ontotext.trree.transactions.TransactionException: Failed to
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As Damyan suggested, delete literals-index in the storage folder and it will be rebuilt on start-up.

Internal server error when trying to build and deploy to AEM

My local AEM instance suddenly stopped working when I switched branches in git and installed the package with
mvn clean install -PautoInstallPackage.
The build failed with [ERROR] Request to http://localhost:4502/crx/packmgr/service.jsp failed, response=Internal Server Error
My error log shows the following errors:
25.10.2018 11:52:33.607 *ERROR* [127.0.0.1 [1540504353564] POST /crx/packmgr/service.jsp HTTP/1.1] org.apache.jackrabbit.oak.spi.security.authentication.external.impl.ExternalLoginModule No IDP found with name 0654f74c177ec80b60f7922a9a6195cf. Will not be used for login.
25.10.2018 11:52:33.607 *ERROR* [127.0.0.1 [1540504353564] POST /crx/packmgr/service.jsp HTTP/1.1] org.apache.jackrabbit.oak.spi.security.authentication.external.impl.ExternalLoginModule No IDP found with name a9dea3b044e912071cbffd4839016d2e. Will not be used for login.
25.10.2018 12:00:30.005 *INFO* [sling-default-2-Registered Service.1079] com.adobe.granite.taskmanagement.impl.jcr.TaskArchiveService archiving tasks at: 'Thu Oct 25 12:00:30 HST 2018'
25.10.2018 12:00:58.610 *ERROR* [127.0.0.1 [1540504858546] POST /crx/packmgr/service.jsp HTTP/1.1] org.apache.sling.engine.impl.SlingRequestProcessorImpl service: Uncaught SlingException
java.io.IOException: Unable to get component of class 'interface org.apache.sling.rewriter.Generator' with type 'htmlparser'.
I've tried adding <useProxy>false</useProxy> to my parent POM file as suggested on a similar thread posted here but that also did not work. I've tried recloning the repo and starting over but since it's a server error that did nothing.
Additional Info:
Running on Windows 10
AEM 6.4
Any assistance will be greatly appreciated.
Thanks!
Thanks for your help. The issue actually happened when I switched branches and installed and deployed the package over the existing package in AEM. By removing the quickstart folder and restarting the JAR file, thus creating a new AEM directory, I was able to install and deploy the correct branch without error.

Deployment error: Bad target server ID tomcat70:home

i am started using netbeans7.4 , when iam trying to run a web application, iam getting below error.. i searched in google, BUT didnt understood how to rectify it.. So, please someone suggest me on how to resolve below issue..
Here is error:
Deployment error: Bad target server ID tomcat70:home=C:\Program Files\Apache Software Foundation\Tomcat 7.0
See the server log for details.
at org.netbeans.modules.j2ee.deployment.devmodules.api.Deployment.deploy(Deployment.java:273)
at org.netbeans.modules.maven.j2ee.ExecutionChecker.performDeploy(ExecutionChecker.java:205)
at org.netbeans.modules.maven.j2ee.ExecutionChecker.executionResult(ExecutionChecker.java:123)
at org.netbeans.modules.maven.execute.MavenCommandLineExecutor.run(MavenCommandLineExecutor.java:235)
at org.netbeans.core.execution.RunClassThread.run(RunClassThread.java:153)
Caused by: java.lang.RuntimeException: Bad target server ID tomcat70:home=C:\Program Files\Apache Software Foundation\Tomcat 7.0
at org.netbeans.modules.j2ee.deployment.impl.projects.DeploymentTarget.getServer(DeploymentTarget.java:270)
at org.netbeans.modules.j2ee.deployment.devmodules.api.Deployment.deploy(Deployment.java:192)
... 4 more
I ran into a similar problem when I was messing with the server setup. I had removed and re-added the server configuration. Right click on the project, go to properties and make sure a server is selected under the "Run" configuration.

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I've tried starting from scratch several times and am able to create the cluster, nodes and instances without issue. I also have the DAS communicating with node2 via SSH. However, each time when I get to the point where I attempt to start instance2 it fails:
$ ./asadmin start-local-instance --node node1 --sync normal instance2
Previous synchronization failed at Feb 23, 2012 2:41:53 PM
Will perform full synchronization.
Removing all cached state for instance instance2.
CLI802 Synchronization failed for directory config, caused by:
javax.xml.bind.JAXBException
- with linked exception:
[java.lang.ClassNotFoundException: com.sun.xml.bind.v2.ContextFactory]
Command start-local-instance failed.
I spent the day Googling and searching GlassFish's Jira, but couldn't find a solution to this issue. I'd very much appreciate any ideas you have on how to solve this problem.
My operating system is CentOS 5.7 and my Java version is 1.6.0_20
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Removing all cached state for instance instance2.
Removing: /usr/local/glassfish3_1_1/glassfish/nodes/blade-50/instance2/config
Removing: /usr/local/glassfish3_1_1/glassfish/nodes/blade-50/instance2/applications
Removing: /usr/local/glassfish3_1_1/glassfish/nodes/blade-50/instance2/generated
Removing: /usr/local/glassfish3_1_1/glassfish/nodes/blade-50/instance2/lib
Removing: /usr/local/glassfish3_1_1/glassfish/nodes/blade-50/instance2/docroot
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Acting on a tip from a user in the Glassfish forum, I learned that Java 1.6.0_20 is an older release of Java that is not supported by Glassfish 3.1.1. I worked with a sysadmin to get Java 1.6.0_31 installed on both nodes of the cluster and that did the trick--both instances start up without errors.