SQL Database in GitHub - sql

I am building a Java app that uses an SQLite database to hold most of its data. For the end-user, the database would be almost entirely read-only, with very occasional edits. I'll (theoretically) be displaying/distributing it through my GitHub page, so my question is:
What's the best way to load the database into GitHub? (I'm using IntelliJ with DataGrip.)
I'd prefer to be able to update the database when I commit/push, instead of having to overwrite the whole file. The closest question I can find is How to include MySQL database schema on GitHub? but there could potentially be hundreds or thousands of entries, so I can't just rebuild the tables when the user installs the app.
I'm applying for entry-level developer jobs, and this project is going to be my main portfolio piece during job-hunting. I'm trying to make sure it is not only functional but also makes a good impression. Any help is (very) greatly appreciated.
EDIT:
After moving my .db file into the folder connected to GitHub (same level as my src folder) apparently I can now commit/push it with the rest of my files. How do I make sure that the connection from my Java code to the database stays valid once it is loaded onto another user's system? Can I just stick with
connection = DriverManager.getConnection("jdbc:sqlite:mydatabase.db");
or do I need to rework the path?

Upon starting, if your application can't find a corresponding sqlite database file, have it create one. Then do initial load of your tables from either CSV, JSON or XML files.
You can upload these files to Git, as they are text formats.

Related

SQL (or any relational db) engine with SCM-friendly backing store [duplicate]

I'm doing a web app, and I need to make a branch for some major changes, the thing is, these changes require changes to the database schema, so I'd like to put the entire database under git as well.
How do I do that? is there a specific folder that I can keep under a git repository? How do I know which one? How can I be sure that I'm putting the right folder?
I need to be sure, because these changes are not backward compatible; I can't afford to screw up.
The database in my case is PostgreSQL
Edit:
Someone suggested taking backups and putting the backup file under version control instead of the database. To be honest, I find that really hard to swallow.
There has to be a better way.
Update:
OK, so there' no better way, but I'm still not quite convinced, so I will change the question a bit:
I'd like to put the entire database under version control, what database engine can I use so that I can put the actual database under version control instead of its dump?
Would sqlite be git-friendly?
Since this is only the development environment, I can choose whatever database I want.
Edit2:
What I really want is not to track my development history, but to be able to switch from my "new radical changes" branch to the "current stable branch" and be able for instance to fix some bugs/issues, etc, with the current stable branch. Such that when I switch branches, the database auto-magically becomes compatible with the branch I'm currently on.
I don't really care much about the actual data.
Take a database dump, and version control that instead. This way it is a flat text file.
Personally I suggest that you keep both a data dump, and a schema dump. This way using diff it becomes fairly easy to see what changed in the schema from revision to revision.
If you are making big changes, you should have a secondary database that you make the new schema changes to and not touch the old one since as you said you are making a branch.
I'm starting to think of a really simple solution, don't know why I didn't think of it before!!
Duplicate the database, (both the schema and the data).
In the branch for the new-major-changes, simply change the project configuration to use the new duplicate database.
This way I can switch branches without worrying about database schema changes.
EDIT:
By duplicate, I mean create another database with a different name (like my_db_2); not doing a dump or anything like that.
Use something like LiquiBase this lets you keep revision control of your Liquibase files. you can tag changes for production only, and have lb keep your DB up to date for either production or development, (or whatever scheme you want).
Irmin (branching + time travel)
Flur.ee (immutable + time travel + graph query)
XTDB (formerly called 'CruxDB') (time travel + query)
TerminusDB (immutable + branching + time travel + Graph Query!)
DoltDB (branching + time-travel + SQL query)
Quadrable (branching + remote state verification)
EdgeDB (no real time travel, but migrations derived by the compiler after schema changes)
Migra (diffing for Postgres schemas/data. Auto-generate migration scripts, auto-sync db state)
ImmuDB (immutable + time-travel)
I've come across this question, as I've got a similar problem, where something approximating a DB based Directory structure, stores 'files', and I need git to manage it. It's distributed, across a cloud, using replication, hence it's access point will be via MySQL.
The gist of the above answers, seem to similarly suggest an alternative solution to the problem asked, which kind of misses the point, of using Git to manage something in a Database, so I'll attempt to answer that question.
Git is a system, which in essence stores a database of deltas (differences), which can be reassembled, in order, to reproduce a context. The normal usage of git assumes that context is a filesystem, and those deltas are diff's in that file system, but really all git is, is a hierarchical database of deltas (hierarchical, because in most cases each delta is a commit with at least 1 parents, arranged in a tree).
As long as you can generate a delta, in theory, git can store it. The problem is normally git expects the context, on which it's generating delta's to be a file system, and similarly, when you checkout a point in the git hierarchy, it expects to generate a filesystem.
If you want to manage change, in a database, you have 2 discrete problems, and I would address them separately (if I were you). The first is schema, the second is data (although in your question, you state data isn't something you're concerned about). A problem I had in the past, was a Dev and Prod database, where Dev could take incremental changes to the schema, and those changes had to be documented in CVS, and propogated to live, along with additions to one of several 'static' tables. We did that by having a 3rd database, called Cruise, which contained only the static data. At any point the schema from Dev and Cruise could be compared, and we had a script to take the diff of those 2 files and produce an SQL file containing ALTER statements, to apply it. Similarly any new data, could be distilled to an SQL file containing INSERT commands. As long as fields and tables are only added, and never deleted, the process could automate generating the SQL statements to apply the delta.
The mechanism by which git generates deltas is diff and the mechanism by which it combines 1 or more deltas with a file, is called merge. If you can come up with a method for diffing and merging from a different context, git should work, but as has been discussed you may prefer a tool that does that for you. My first thought towards solving that is this https://git-scm.com/book/en/v2/Customizing-Git-Git-Configuration#External-Merge-and-Diff-Tools which details how to replace git's internal diff and merge tool. I'll update this answer, as I come up with a better solution to the problem, but in my case I expect to only have to manage data changes, in-so-far-as a DB based filestore may change, so my solution may not be exactly what you need.
There is a great project called Migrations under Doctrine that built just for this purpose.
Its still in alpha state and built for php.
http://docs.doctrine-project.org/projects/doctrine-migrations/en/latest/index.html
Take a look at RedGate SQL Source Control.
http://www.red-gate.com/products/sql-development/sql-source-control/
This tool is a SQL Server Management Studio snap-in which will allow you to place your database under Source Control with Git.
It's a bit pricey at $495 per user, but there is a 28 day free trial available.
NOTE
I am not affiliated with RedGate in any way whatsoever.
I've released a tool for sqlite that does what you're asking for. It uses a custom diff driver leveraging the sqlite projects tool 'sqldiff', UUIDs as primary keys, and leaves off the sqlite rowid. It is still in alpha so feedback is appreciated.
Postgres and mysql are trickier, as the binary data is kept in multiple files and may not even be valid if you were able to snapshot it.
https://github.com/cannadayr/git-sqlite
I want to make something similar, add my database changes to my version control system.
I am going to follow the ideas in this post from Vladimir Khorikov "Database versioning best practices". In summary i will
store both its schema and the reference data in a source control system.
for every modification we will create a separate SQL script with the changes
In case it helps!
You can't do it without atomicity, and you can't get atomicity without either using pg_dump or a snapshotting filesystem.
My postgres instance is on zfs, which I snapshot occasionally. It's approximately instant and consistent.
I think X-Istence is on the right track, but there are a few more improvements you can make to this strategy. First, use:
$pg_dump --schema ...
to dump the tables, sequences, etc and place this file under version control. You'll use this to separate the compatibility changes between your branches.
Next, perform a data dump for the set of tables that contain configuration required for your application to operate (should probably skip user data, etc), like form defaults and other data non-user modifiable data. You can do this selectively by using:
$pg_dump --table=.. <or> --exclude-table=..
This is a good idea because the repo can get really clunky when your database gets to 100Mb+ when doing a full data dump. A better idea is to back up a more minimal set of data that you require to test your app. If your default data is very large though, this may still cause problems though.
If you absolutely need to place full backups in the repo, consider doing it in a branch outside of your source tree. An external backup system with some reference to the matching svn rev is likely best for this though.
Also, I suggest using text format dumps over binary for revision purposes (for the schema at least) since these are easier to diff. You can always compress these to save space prior to checking in.
Finally, have a look at the postgres backup documentation if you haven't already. The way you're commenting on backing up 'the database' rather than a dump makes me wonder if you're thinking of file system based backups (see section 23.2 for caveats).
What you want, in spirit, is perhaps something like Post Facto, which stores versions of a database in a database. Check this presentation.
The project apparently never really went anywhere, so it probably won't help you immediately, but it's an interesting concept. I fear that doing this properly would be very difficult, because even version 1 would have to get all the details right in order to have people trust their work to it.
This question is pretty much answered but I would like to complement X-Istence's and Dana the Sane's answer with a small suggestion.
If you need revision control with some degree of granularity, say daily, you could couple the text dump of both the tables and the schema with a tool like rdiff-backup which does incremental backups. The advantage is that instead of storing snapshots of daily backups, you simply store the differences from the previous day.
With this you have both the advantage of revision control and you don't waste too much space.
In any case, using git directly on big flat files which change very frequently is not a good solution. If your database becomes too big, git will start to have some problems managing the files.
Here is what i am trying to do in my projects:
separate data and schema and default data.
The database configuration is stored in configuration file that is not under version control (.gitignore)
The database defaults (for setting up new Projects) is a simple SQL file under version control.
For the database schema create a database schema dump under the version control.
The most common way is to have update scripts that contains SQL Statements, (ALTER Table.. or UPDATE). You also need to have a place in your database where you save the current version of you schema)
Take a look at other big open source database projects (piwik,or your favorite cms system), they all use updatescripts (1.sql,2.sql,3.sh,4.php.5.sql)
But this a very time intensive job, you have to create, and test the updatescripts and you need to run a common updatescript that compares the version and run all necessary update scripts.
So theoretically (and thats what i am looking for) you could
dumped the the database schema after each change (manually, conjob, git hooks (maybe before commit))
(and only in some very special cases create updatescripts)
After that in your common updatescript (run the normal updatescripts, for the special cases) and then compare the schemas (the dump and current database) and then automatically generate the nessesary ALTER Statements. There some tools that can do this already, but haven't found yet a good one.
What I do in my personal projects is, I store my whole database to dropbox and then point MAMP, WAMP workflow to use it right from there.. That way database is always up-to-date where ever I need to do some developing. But that's just for dev! Live sites is using own server for that off course! :)
Storing each level of database changes under git versioning control is like pushing your entire database with each commit and restoring your entire database with each pull.
If your database is so prone to crucial changes and you cannot afford to loose them, you can just update your pre_commit and post_merge hooks.
I did the same with one of my projects and you can find the directions here.
That's how I do it:
Since your have free choise about DB type use a filebased DB like e.g. firebird.
Create a template DB which has the schema that fits your actual branch and store it in your repository.
When executing your application programmatically create a copy of your template DB, store it somewhere else and just work with that copy.
This way you can put your DB schema under version control without the data. And if you change your schema you just have to change the template DB
We used to run a social website, on a standard LAMP configuration. We had a Live server, Test server, and Development server, as well as the local developers machines. All were managed using GIT.
On each machine, we had the PHP files, but also the MySQL service, and a folder with Images that users would upload. The Live server grew to have some 100K (!) recurrent users, the dump was about 2GB (!), the Image folder was some 50GB (!). By the time that I left, our server was reaching the limit of its CPU, Ram, and most of all, the concurrent net connection limits (We even compiled our own version of network card driver to max out the server 'lol'). We could not (nor should you assume with your website) put 2GB of data and 50GB of images in GIT.
To manage all this under GIT easily, we would ignore the binary folders (the folders containing the Images) by inserting these folder paths into .gitignore. We also had a folder called SQL outside the Apache documentroot path. In that SQL folder, we would put our SQL files from the developers in incremental numberings (001.florianm.sql, 001.johns.sql, 002.florianm.sql, etc). These SQL files were managed by GIT as well. The first sql file would indeed contain a large set of DB schema. We don't add user-data in GIT (eg the records of the users table, or the comments table), but data like configs or topology or other site specific data, was maintained in the sql files (and hence by GIT). Mostly its the developers (who know the code best) that determine what and what is not maintained by GIT with regards to SQL schema and data.
When it got to a release, the administrator logs in onto the dev server, merges the live branch with all developers and needed branches on the dev machine to an update branch, and pushed it to the test server. On the test server, he checks if the updating process for the Live server is still valid, and in quick succession, points all traffic in Apache to a placeholder site, creates a DB dump, points the working directory from 'live' to 'update', executes all new sql files into mysql, and repoints the traffic back to the correct site. When all stakeholders agreed after reviewing the test server, the Administrator did the same thing from Test server to Live server. Afterwards, he merges the live branch on the production server, to the master branch accross all servers, and rebased all live branches. The developers were responsible themselves to rebase their branches, but they generally know what they are doing.
If there were problems on the test server, eg. the merges had too many conflicts, then the code was reverted (pointing the working branch back to 'live') and the sql files were never executed. The moment that the sql files were executed, this was considered as a non-reversible action at the time. If the SQL files were not working properly, then the DB was restored using the Dump (and the developers told off, for providing ill-tested SQL files).
Today, we maintain both a sql-up and sql-down folder, with equivalent filenames, where the developers have to test that both the upgrading sql files, can be equally downgraded. This could ultimately be executed with a bash script, but its a good idea if human eyes kept monitoring the upgrade process.
It's not great, but its manageable. Hope this gives an insight into a real-life, practical, relatively high-availability site. Be it a bit outdated, but still followed.
Update Aug 26, 2019:
Netlify CMS is doing it with GitHub, an example implementation can be found here with all information on how they implemented it netlify-cms-backend-github
I say don't. Data can change at any given time. Instead you should only commit data models in your code, schema and table definitions (create database and create table statements) and sample data for unit tests. This is kinda the way that Laravel does it, committing database migrations and seeds.
I would recommend neXtep (Link removed - Domain was taken over by a NSFW-Website) for version controlling the database it has got a good set of documentation and forums that explains how to install and the errors encountered. I have tested it for postgreSQL 9.1 and 9.3, i was able to get it working for 9.1 but for 9.3 it doesn't seems to work.
Use a tool like iBatis Migrations (manual, short tutorial video) which allows you to version control the changes you make to a database throughout the lifecycle of a project, rather than the database itself.
This allows you to selectively apply individual changes to different environments, keep a changelog of which changes are in which environments, create scripts to apply changes A through N, rollback changes, etc.
I'd like to put the entire database under version control, what
database engine can I use so that I can put the actual database under
version control instead of its dump?
This is not database engine dependent. By Microsoft SQL Server there are lots of version controlling programs. I don't think that problem can be solved with git, you have to use a pgsql specific schema version control system. I don't know whether such a thing exists or not...
Use a version-controlled database, of which there are now several.
https://www.dolthub.com/blog/2021-09-17-database-version-control/
These products don't apply version control on top of another type of database -- they are their own database engines that support version control operations. So you need to migrate to them or start building on them in the first place.
I write one of them, DoltDB, which combines the interfaces of MySQL and Git. Check it out here:
https://github.com/dolthub/dolt
I wish it were simpler. Checking in the schema as a text file is a good start to capture the structure of the DB. For the content, however, I have not found a cleaner, better method for git than CSV files. One per table. The DB can then be edited on multiple branches and merges extremely well.

Composite C1 - develop locally, sync to live site

I have a couple of Composite C1 CMS websites.
To edit them currently I use the web based CMS on the live site.
However - I would like to update the (code & content) in Visual Studio locally - then sync to the web. However, if my local copy is older than that online (e.g. a non techy client has edited something on the live site) and I Web Deploy - it will go over the top of the new file on the server.
I need a solution that works out the newest change? I can't find anything in Google or the C1 docs.
How can I sync - preferably using Web Deploy. Do I need some kind of version control?
Is there a best practice for this - editing the live site through the web interface seems a bit dicey & is slow.
The general answer to this type of scenario seems to be to use the Package Creator. With that you can develop locally, add the files you've changed to a package, and install that package on a live site. This solution does not at all cover all the parts of you question though, and has certain limitations:
You cannot selectively add content to a package. It's all pages or no pages.
Adding datatypes is easy, but updating them later requires you to delete the datatype (and data), and recreate the datatype.
In my experience packages works well for incremental site updates, if you limit the packages content to be front end stuff, like css, images and such.
You say you need a solution that works out the newest changes - I believe the only solution to this is yourself, with the aid of some tooling. I don't think there's a silver bullet solution here.
Should you use a version control system? Yes! By all means. Even if you are not sharing your code with anyone, a VCS is a great way to get to know Composite C1 from a file system perspective, as you can carefully track what files are changed on disk, as you develop. This knowledge is crucial when you want to continuously add features the a website that is already alive and kicking - you need to know what to deploy, and what not to touch.
Make sure you read the docs on how Composite fits in VCS: http://docs.composite.net/Configuration/C1-and-Version-Control
I assume that your sites are using the XML data storage (if you where using SQL Data Store, your content would not be overridden upon sync).
This means that your entire web application lives in one folder on disk on the web server, which can be an advantage here.
I'll try to outline a solution that could work for you, although I must stress that I've never tried this - I'm making it up as I type.
Let's say you're using git, download the site in it's entirety from the production web server, and commit the whole damned thing* to your master branch.
Then you create a new feature branch from that commit, and start making the changes you want to deploy later, and carefully commit your work as you go along, making sure you only commit the changes that are needed for your feature to work, to the feature branch.
Now, you are ready to deploy, and you switch back the master branch, and again download the entire site and commit it to master.
You then merge your feature branch into the master branch, and have git do all the hard work of stitching you changes in with the changes from the live site. There are bound to be merge conflicts, and that is where you will have to jump in, and decide for yourself what content needs to go live.
After this is done and tested, you can web deploy the site up to the production environment.
Changes to the live site might have occurred while you where merging, so consider closing the site, or parts of it, during this process.
If you are using SQL Data Store i suggest paying for a tool like Red Gate's SQL Compare and SQL Data Compare or SQL Delta, to compare your dev database to the production database, and hand pick SQL scripts that can be applied to the production database along with your feature deployment.
'* Do consider using a .gitignore file to avoid committing certain files - refer to the docs for mere info.
I suppose you should use the Package Creator
Also have a look here: http://docs.composite.net/Configuration/C1-and-Version-Control

Need suggestions on which option will be efficient to store data on iPad

This is my first time that I am working on a big project for a client. So I was not sure how to solve this problem. However I have come up with two different ideas but I need professionals opinion about which one is better :)
Situation :
There is an application which runs on different client's iPad. Application data is stored by using giant XML file. This XML file is shared among all client by a server. So a server has a centralised copy and each client has their own copy. Once client made changes to their XML copy they updates server copy in and other client updates their copy by updated server copy.
Now only one client can make changes at one time, To fix this I have logic by which before client starts editing XML they need to get ownership from server and server will only allow one client to edit at one time.
Visual Representation :
Now on client side I have to think of a logic by which I will update my client copy and upload it to server. There are two options,
Option 1 :
In option 1, I can directly manipulate XML file by using GDataXML parser and upload that copy to server. For persistence I can save client copy on my iPad in document directory.
Option 2 :
In option 2, I can read XML file create a CoreData representation for local storage. When ever I update data inside core data it will I will change XML file too and than upload that file on server. Double work but I guess better persistence.
Now which one more robust and advisable? Personally I was planning to do option 2 because it seems more robust as I am persisting application data in core data. But option 1 seems more easy work but I don't know how good persistency will remain.
Sorry for lengthy question,
Thanks for any input given.
There are a number of factors which would influence selecting the second option over the first.
How big is the XML file? If you need to work with very large documents, you may need to incrementally parse the XML (SAX) into core data. This will allow you to access the document's contents without loading it all into memory at once.
Do you need to run complex queries in the data? If so, you may be better off using core data fetch predicates, rather than xpath or XSL.
Are you already using core data? Depending on how the XML data is structured, it might be simpler overall to import the data into your existing persistent store.
Otherwise, you can probably make due with parsing the entire document and either traversing the resulting tree or querying with xpath.
If you need to create an object graph based on what you get from server and show it to user (which you most probably need to do), you should stick up to second option, since it allows easy and robust data persistence.
If you do not need to present user with any data from the XML file you can, of course, store it in the Documents directory.
So, if this is a client application and it has at least some visual representation of the data from an XML file you should use CoreData.
If you want a regular update of data , then use CoreData

Storing Drupal SQL in Git

I have a drupal site, and I am storing the codebase in a git repository. This seems to be working out well, but I'm also making changes to the database. I'm considering doing periodic dumps of the database and committing to git. I had a few questions about this.
If I overwrite the file, will git think it is a brand new file or will it recognize that it is an altered version of the same file.
Will this potentialy make my repo huge (the database is 16mb)
Can I zip this file? or will this mess Git up ... the zipped version is only 3mb
Any other suggestions?
If you have enough space, a non-compressed dump in source control is pretty handy because you can compare using a diff program what rows were added/modified/deleted.
Another solution is to use the features module which is supposed to capture drupal config in code. It stores this captured data as a feature module which you can put into version control.
For my database applications, I store scripts of DDL statements (like CREATE TABLE) in some sort of version control system. These scripts sometimes include static "seed" data as well. All the version control systems I use are good at recognizing differences in these files, and they are much smaller than the full database with data.
For the dynamically-generated data, I store backups (e.g. from mysqldump) in an appropriate location (depending on the importance of the data, that may include offsite backups).
1) It's all text, so GIT will just see it as it would any other file.
2) No, due to the above it should add 16mb to the repo (or less, due to GITs own compression), it won't add a new file every time, just the changes, so the repo will change by the size of the additions to the repository
3) No, or GIT won't be able to see the differences - GIT does it's own compression anyway

How to resolve an Error after importing a package in Enterprse Architect Sparx Systems

Everytime I want to change some properties in some class I get the following error messages:
:Microsoft Cursor Engine [-2147217864]
Row cannot be located for updating. Some values may have been changed since it was last read.
ADODB.Recordset[-2146825069]
Operation is not allowed in this context.
How can I solve them??
Even if this question was posted a long time ago:
Now and then this error occurs in my projects, too.
Every time I try to edit specific elements in Enterprise Architect projects i get exactly the same error messages. The only solution to this is to delete the element completely and create it again.
#TomO:
When you are importing a package, is this from XMI or are you import a source code directory?
I import only via XMI file.
What are you using as a repository?
I'm using a PostgreSQL-Server based repository, which I access via ODBC Driver.
In your ODBC Data Source Configuration do you have "Return matched rows instead of affected rows" and "Allow big result sets".
Could specify where I can find these options? Perhaps this is outdated, becaus I can't find any of these options under the Options/Datasource Menu in my ODBC driver.
If you are importing form XMI are you stripping the GUIDs on import, this is always a good idea if you are making a copy of an existing folder in your model as having two elements with the same GUID is not ideal ;-)
I strip GUIDs when I'm exporting and again when I'm importing XMI files.
I would really apprechiate any help concerning this topic.
If possible i might need a little more information. When you are importing a package, is this from XMI or are you import a source code directory? What are you using as a repository? Given the error I am assuming it is not the local EAP file.
In your ODBC Data Source Configuration do you have "Return matched rows instead of affected rows" and "Allow big result sets"
If you are importing form XMI are you stripping the GUIDs on import, this is always a good idea if you are making a copy of an existing folder in your model as having two elements with the same GUID is not ideal ;-)
I have also noticed that you asked this on Apr 14th - sorry it has taken me so long to find your request. I hope this helps!
Are you accessing your ea repository as a cloud repository please? If so, you could try to switch to access the repository as an odbc datasource, and this problem might be solved. I think it is a bug of the Sparx enterprise architect cloud service.