Getting webpack error "Module not found: Error: Cannot resolve module" in fluxible after re-installing node_modules - npm

I have a fluxible project and I'm getting these errors after I deleted all files in node_modules and reinstalled with npm install -d when I try to run with npm run dev which is node webpack-dev-server.js & PORT=3001 nodemon start.js -e js,jsx. The app was working fine until I reinstalled dependencies.
Here's the fluxible template project
https://github.com/yahoo/generator-fluxible
What is causing these errors and how can I diagnose? Why did it work initially and then stopped working when I reinstalled node modules?
ERROR in ./client.js
Module not found: Error: Cannot resolve module 'node_modules/webpack/buildin/module.js' in /Projects/myproject
# ./client.js 1:0-49
ERROR in ./app.js
Module not found: Error: Cannot resolve module 'node_modules/webpack/buildin/module.js' in /Projects/myproject
# ./app.js 1:0-49


https://github.com/hapijs/qs/issues/128
I think it is a know issue. You can always go back to a previous version.

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