How to use the SPARQL CONSTRUCT in the new MeSH endpoint? - sparql

I'm trying to use the construct CONSTRUCT in the SPARQL MeSH endpoint but this one always return an empty query.
In particular i'm finding the alias of some medical names.
Basically the SELECT query that works is:
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX meshv: <http://id.nlm.nih.gov/mesh/vocab#>
PREFIX mesh: <http://id.nlm.nih.gov/mesh/>
PREFIX mesh2015: <http://id.nlm.nih.gov/mesh/2015/>
SELECT ?d ?dName ?c ?cName
FROM <http://id.nlm.nih.gov/mesh>
WHERE {
?d a meshv:Descriptor .
?d meshv:concept ?c .
?d rdfs:label ?dName .
?c rdfs:label ?cName
FILTER(REGEX(?dName,'infection','i') || REGEX(?cName,'infection','i'))
}
ORDER BY ?d
and i'm finding something as the following:
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX meshv: <http://id.nlm.nih.gov/mesh/vocab#>
PREFIX mesh: <http://id.nlm.nih.gov/mesh/>
PREFIX mesh2015: <http://id.nlm.nih.gov/mesh/2015/>
CONSTRUCT{
?dName a (subject)
is alias of (predicate)
?cName (object)
}
WHERE {
?d a meshv:Descriptor .
?d meshv:concept ?c .
?d rdfs:label ?dName .
?c rdfs:label ?cName
FILTER(REGEX(?dName,'infection','i') || REGEX(?cName,'infection','i'))
}
Reference documents
informs that CONSTRUCT is supported and you can try to query here, the SPARQL endpoint should be here.
Thank you for your help.

Related

SPARQL-query to get data from wikidata not working

I try to get some image links from wikidata by running a SPARQL-query from my local Jena Fuseki instance. I want to merge it with data from my local graph. Unfortunately the query isn't delivering any data but runs and runs instead without any error message.
The sparql-query:
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX wd: <http://www.wikidata.org/entity/>
PREFIX wdt: <http://www.wikidata.org/prop/direct/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
SELECT ?name ?image WHERE {
?s foaf:name ?name.
?s owl:sameAs ?wikidata_link.
FILTER regex(str(?wikidata_link), "wikidata").
SERVICE <https://query.wikidata.org/sparql> {
?wikidata_link wdt:P18 ?image.
}
} LIMIT 10
The test data I have in my local graph on the Jena Fuseki server:
#base <http://dmt.de/pages> .
#prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
#prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
#prefix foaf: <http://xmlns.com/foaf/0.1/> .
#prefix dbp: <http://dbpedia.org/resource/> .
#prefix wd: <https://www.wikidata.org/entity/> .
#prefix owl: <http://www.w3.org/2002/07/owl#> .
<#john-cage>
a foaf:Person ;
foaf:name "John Cage";
owl:sameAs dbp:John_Cage, wd:Q180727.
<#karlheinz-stockhausen>
a foaf:Person ;
foaf:name "Karlheinz Stockhausen";
owl:sameAs dbp:Karlheinz_Stockhausen, wd:Q154556.
<#arnold-schoenberg>
a foaf:Person;
foaf:name "Arnold Schönberg";
owl:sameAs dbp:Arnold_Schoenberg, wd:Q154770.
I tried a similar query for dbpedia-data which run perfectly.
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX dbp: <http://dbpedia.org/resource/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX dbo: <http://dbpedia.org/ontology/>
SELECT ?name ?dbpedia_link ?birthplace WHERE {
?s foaf:name ?name.
?s owl:sameAs ?dbpedia_link.
FILTER regex(str(?dbpedia_link),"dbpedia.org").
SERVICE <https://dbpedia.org/sparql> {
?dbpedia_link dbo:birthPlace ?birthplace.
}
} LIMIT 10
Any Ideas? Thanks in advance!

Error handling of SPARQL query with given RDF graph

I have the following RDF graph with prefixes
PREFIX r: <http://dbpedia.org/resources/>
PREFIX o: <http://dbpedia.org/ontology/>
And the query
PREFIX r: <http://dbpedia.org/resources/>
PREFIX o: <http://dbpedia.org/ontology/>
SELECT ?s ?author
WHERE {
?s o:type o:Book .
?s o:author ?author .
?author ?incategory r:Category:American_atheists.
}
I am now wondering what the output would look like. I have tried using https://dbpedia.org/sparql but this results in a parsing error.
Is this a proper query anyway ?
The graph has the prefix r for Book and the query has o:Book in the triple.
The parsing error is due to the colon after r:Category. Colon in abbreviated IRIs can only be used as part of the prefix. This query should work:
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX r: <http://dbpedia.org/resource/>
PREFIX o: <http://dbpedia.org/ontology/>
SELECT ?s ?author
WHERE {
?s rdf:type o:Book .
?s o:author ?author .
?author ?incategory <http://dbpedia.org/resource/Category:American_atheists> .
}
Or, if you want a more concise WHERE clause:
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX r: <http://dbpedia.org/resource/>
PREFIX o: <http://dbpedia.org/ontology/>
PREFIX c: <http://dbpedia.org/resource/Category:>
SELECT ?s ?author
WHERE {
?s rdf:type o:Book .
?s o:author ?author .
?author ?incategory c:American_atheists .
}

Sparql - Conditional Output

I am very new to the semantic web and sparql. I have an internal ontology that uses SmartLogic in order to manage the data.
I am writing some simple queries to get started.
PREFIX skos: <http://www.w3.org/2004/02/skos/core#> # Simple Knowledge Organization System - https://www.w3.org/2004/02/skos/
PREFIX skosxl: <http://www.w3.org/2008/05/skos-xl#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs: <https://www.w3.org/TR/rdf-schema/>
prefix owl: <http://www.w3.org/2002/07/owl#>
prefix ap: <http://cv.ap.org/ns>
SELECT DISTINCT
?subjectPrefLabel ?p ?o ?oL
WHERE {
{
?subject skosxl:prefLabel ?subjectLabel .
?subjectLabel skosxl:literalForm ?subjectPrefLabel .
?subject ?p ?o .
OPTIONAL {?o skos:prefLabel ?oL}
}
FILTER regex(?subjectPrefLabel, "Trump", 'i')
} order by ?subjectPrefLabel
This query returns results that look like :
I am trying to merge the ?o and ?oL fields, so that it will replace the ?o field, if and only if there is a valid ?oL Field
I haven't been able to figure it out quite yet. If there is any suggestions please let me know.
A bit difficult without data for testing the query, but in SPARQL 1.1 you can use BIND(IF(condition,then,else) as ?result ):
PREFIX skosxl: <http://www.w3.org/2008/05/skos-xl#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
PREFIX rdfs: <https://www.w3.org/TR/rdf-schema/>
PREFIX ap: <http://cv.ap.org/ns>
SELECT DISTINCT ?subjectPrefLabel ?p ?o
WHERE
{ ?subject skosxl:prefLabel ?subjectLabel .
?subjectLabel
skosxl:literalForm ?subjectPrefLabel .
?subject ?p ?o_tmp
OPTIONAL
{ ?o_tmp skos:prefLabel ?oL }
BIND(if(bound(?oL), ?oL, ?o_tmp) AS ?o)
FILTER regex(?subjectPrefLabel, "Trump", "i")
}
ORDER BY ?subjectPrefLabel

Federated queries on dbpedia and linkedmdb

I am writing a federated query to get the books based on films in dbpedia and in turn using the film name from dbpedia to retrieve the corresponding imdblink link for the same. I am getting an empty set when I add the service of linkedmdb.
Here is my code
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX movie: <http://data.linkedmdb.org/resource/movie/>
PREFIX dc: <http://purl.org/dc/terms/>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX dbo: <http://dbpedia.org/ontology/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX dbp: <http://dbpedia.org/property/>
SELECT distinct ?name ?author ?filmname ?imdbID WHERE {
SERVICE <http://dbpedia.org/sparql> {
?book rdf:type dbo:Book .
?book foaf:name ?name .
?book dbp:author ?author .
?author foaf:name ?authname .
?book ^dbo:basedOn ?movie .
?movie a dbo:Film .
?movie foaf:name ?filmname
FILTER (str(?name) IN ("Royal Flash","White Oleander", "Possession: A Romance", "Misery", "Intensity", "The War of The Roses", "Momo", "The Sicilian", "Derailed", "Ragtime"))
}
SERVICE <http://data.linkedmdb.org/sparql> {
?filmname foaf:page ?imdbID .
?filmname dc:title ?title .
FILTER(regex(str(?imdbID), "www.imdb.com" ) )
}
}
I am using the following endpoint http://www.sparql.org/query.html
That does not work because of the ?filename variable
in the first SERVICE clause you get
?movie foaf:name ?filmname, thus, those are string literals
in the second SERVICE clause ?filmname are URIs
It will become easy to see if you run both SPARQL queries separately.
What you would have to do is to match on the title, i.e. change
?filmname dc:title ?title .
to
?filmname dc:title ?filmname .
Note, this might not work because of different types of strings, e.g. with and without language tag etc.
In that case you would have to match on the lexical form again, i.e. use temporary variables ?filmname1 and ?filmname2 and use
FILTER(str(?filmname1) = str(?filmname2))
PREFIX dbo: <http://dbpedia.org/ontology/>
PREFIX dbp: <http://dbpedia.org/property/>
PREFIX movie: <http://data.linkedmdb.org/resource/movie/>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX dc: <http://purl.org/dc/terms/>
SELECT DISTINCT ?name ?author ?filmname1 ?imdbID
WHERE
{ SERVICE <http://dbpedia.org/sparql>
{ ?book rdf:type dbo:Book ;
foaf:name ?name ;
dbp:author ?author .
?author foaf:name ?authname .
?book ^dbo:basedOn ?movie .
?movie rdf:type dbo:Film ;
foaf:name ?filmname1
FILTER ( str(?name) IN ("Royal Flash", "White Oleander", "Possession: A Romance", "Misery", "Intensity", "The War of The Roses", "Momo", "The Sicilian", "Derailed", "Ragtime") )
}
SERVICE <http://data.linkedmdb.org/sparql>
{ ?filmname foaf:page ?imdbID ;
dc:title ?filmname2
FILTER regex(str(?imdbID), "www.imdb.com")
}
FILTER ( str(?filmname1) = str(?filmname2) )
}

How to query DBpedia SPARQL by resource uri?

I'm querying DBpedia types in SPARQL (http://dbpedia.org/sparql) by resource's label
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX dc: <http://purl.org/dc/elements/1.1/>
PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
PREFIX : <http://dbpedia.org/resource/>
PREFIX ru: <http://ru.dbpedia.org/resource/>
PREFIX dbpedia2: <http://dbpedia.org/property/>
PREFIX dbpedia: <http://dbpedia.org/>
PREFIX dbo: <http://dbpedia.org/ontology/>
SELECT ?type ?superType WHERE { {
?res rdfs:label "HarryPotter"#en.
} UNION {
?redir dbo:wikiPageRedirects ?res .
?redir rdfs:label "HarryPotter"#en .
}
?res rdf:type ?type .
OPTIONAL {
?type rdfs:subClassOf ?superType .
}
}
It works fine.
But what if I know the exact resource - http://dbpedia.org/page/Harry_Potter? I tried something like:
?res a :Harry_Potter.
But it does not work.
How to query DBpedia types and supertypes if I know the resource URI? I can't figure out which property or operator I should use (e.g., rdfs:Resource, a, etc., which do not work)
When you write
?res a :Harry_Potter.
It doesn't work, because this means "a resource, which is of type :Harry_Potter". It is equivalent to
?res rdf:type :Harry_Potter.
:Harry_Potter identifies a resource and not the type, thus it should be used in place of ?res.
Also I think you mean Harry_Potter_(character), because that is the actual identifier and not redirect.
You query would be as simple as
SELECT ?type ?superType WHERE
{
# give me ?type of the resource
<http://dbpedia.org/resource/Harry_Potter_(character)> rdf:type ?type .
# give me ?superTypes of ?type
OPTIONAL {
?type rdfs:subClassOf ?superType .
}
}
You can just put the URI as the subject in there WHERE conditions.
SELECT ?title, ?releaseDate
WHERE {
<http://dbpedia.org/resource/Super_Mario_Bros._3> dbp:title ?title .
<http://dbpedia.org/resource/Super_Mario_Bros._3> dbo:releaseDate ?releaseDate .
}