Currently I trying to get myself acquainted with the matplotlib.pyplot library. After having seeing quite some examples and tutorial, I noticed that the subplots function also has some returns values which usually are used later on. However, on the matplotlib website I was unable to find any specification on what exactly is returned, and none of the examples are the same (although it usually seems to be an ax object). Can you guys give me some to pointers as to what is returned, and how I can use it. Thanks in advance!
In the documentation it says that matplotlib.pyplot.subplots return an instance of Figure and an array of (or a single) Axes (array or not depends on the number of subplots).
Common use is:
import matplotlib.pyplot as plt
import numpy as np
f, axes = plt.subplots(1,2) # 1 row containing 2 subplots.
# Plot random points on one subplots.
axes[0].scatter(np.random.randn(10), np.random.randn(10))
# Plot histogram on the other one.
axes[1].hist(np.random.randn(100))
# Adjust the size and layout through the Figure-object.
f.set_size_inches(10, 5)
f.tight_layout()
Generally, the matplotlib.pyplot.subplots() returns a figure instance and an object or an array of Axes objects.
Since you haven't posted the code with which you are trying to get your hands dirty, I will do it by taking 2 test cases :
case 1 : when number of subplots needed(dimension) is mentioned
import matplotlib.pyplot as plt #importing pyplot of matplotlib
import numpy as np
x = [1, 3, 5, 7]
y = [2, 4, 6, 8]
fig, axes = plt.subplots(2, 1)
axes[0].scatter(x, y)
axes[1].boxplot(x, y)
plt.tight_layout()
plt.show()
As you can see here since we have given the number of subplots needed, (2,1) in this case which means no. of rows, r = 2 and no. of columns, c = 1.
In this case, the subplot returns the figure instance along with an array of axes, length of which is equal to the total no. of the subplots = r*c , in this case = 2.
case 2 : when number of subplots(dimension) is not mentioned
import matplotlib.pyplot as plt #importing pyplot of matplotlib
import numpy as np
x = [1, 3, 5, 7]
y = [2, 4, 6, 8]
fig, axes = plt.subplots()
#size has not been mentioned and hence only one subplot
#is returned by the subplots() method, along with an instance of a figure
axes.scatter(x, y)
#axes.boxplot(x, y)
plt.tight_layout()
plt.show()
In this case, no size or dimension has been mentioned explicitly, therefore only one subplot is created, apart from the figure instance.
You can also control the dimensions of the subplots by using the squeeze keyword. See documentation. It is an optional argument, having default value as True.
Actually, 'matplotlib.pyplot.subplots()' is returning two objects:
The figure instance.
The 'axes'.
'matplotlib.pyplot.subplots()' takes many arguments. That has been given below:
matplotlib.pyplot.subplots(nrows=1, ncols=1, *, sharex=False, sharey=False, squeeze=True, subplot_kw=None, gridspec_kw=None, **fig_kw)
The first two arguments are : nrows : the number of rows I want to creat in my Subplot grid , ncols : The number of columns should have in the subplot grid. But, if 'nrows' and 'ncols' are not decleared explicitely, it will take the values of 1 in each by default.
Now, come to objects that has been created:
(1)The figure instance is nothing but throwing a figure which will hold all the plots.
(2)The 'axes' object will contain all the informations about each subplots.
Let's understand through an example:
Here, 4 subplots are being created at the positions of (0,0),(0,1),(1,0),(1,1).
Now, let's suppose, at the position (0,0), I want to have a scatterplot. What will I do: I will incorporate the scatterplot into "axes[0,0]" object that will hold all the informations about the scatterplot and reflect it into the figure instance.
The same thing will happen for all the other three positions.
Hope this will help and let me know your thought about this.
Related
I've been trying to plot hatches (like this pattern, "//") on polygons of a shapefile, based on a condition. The condition is that whichever polygon values ("Sig") are greater than equal to 0.05, there should be a hatch pattern for them. Unfortunately the resulting map doesn't meet my requirements.
So I first plot the "AMOTL" variable and then wanted to plot the hatches (variable Sig) on top of them (if the values are greater than equal to 0.05). I have used the following code:
import contextily as ctx
from mpl_toolkits.basemap import Basemap
import matplotlib.pyplot as plt
import numpy as np
import matplotlib.ticker as ticker
from matplotlib.patches import Ellipse, Polygon
data = gpd.read_file("mapsignif.shp")
Sig = data.loc[data["Sig"].ge(0.05)]
data.loc[data["AMOTL"].eq(0), "AMOTL"] = np.nan
ax = data.plot(
figsize=(12, 10),
column="AMOTL",
legend=True,
cmap="bwr",
vmin = -1,
vmax= 1,
missing_kwds={"color":"white"},
)
Sig.plot(
ax=ax,
hatch='//'
)
map = Basemap(
llcrnrlon=-50,
llcrnrlat=30,
urcrnrlon=50.0,
urcrnrlat=85.0,
resolution="i",
lat_0=39.5,
lon_0=1,
)
map.fillcontinents(color="lightgreen")
map.drawcoastlines()
map.drawparallels(np.arange(10,90,20),labels=[1,1,1,1])
map.drawmeridians(np.arange(-180,180,30),labels=[1,1,0,1])
Now the problem is that my original image (on which I want to plot the hatches) is different from the image resulting from the above code:
Original Image -
Resultant image from above code:
I basically want to plot hatches on that first image. This topic is similar to correlation plots where you have places with hatches (if the p-value is greater than 0.05). The first image plots the correlation variable and some of them are significant (defined by Sig). So I want to plot the Sig variable on top of the AMOTL. I've tried variations of the code, but still can't get through.
Would be grateful for some assistance... Here's my file - https://drive.google.com/file/d/10LPNjBtQMdQMw6XmXdJEg6Uq4icx_LD6/view?usp=sharing
I’d bet this is the culprit:
data.loc[data["Sig"].ge(0.05), "Sig"].plot(
column="Sig", hatch='//'
)
In this line, you’re selecting only the 'Sig' column, eliminating all spatial data in the 'geometry' column and returning a pandas.Series instead of a geopandas.GeoDataFrame. In order to plot a data column using the geometries column for your shapes you must maintain at least both of those columns in the object you call .plot on.
So instead, don’t select the column:
data.loc[data["Sig"].ge(0.05)].plot(
column="Sig", hatch='//'
)
You are already telling geopandas to plot the "Sig" column by using the column argument to .plot - no need to limit the actual data too.
Also, when overlaying a plot on an existing axis, be sure to pass in the axis object:
data.loc[data["Sig"].ge(0.05)].plot(
column="Sig", hatch='//', ax=ax
)
I want to plot from pd df using sns barplot. Everything works fine :
code associated :
result = df.groupby(['Code departement']).size().sort_values(ascending=False)
x=result.index
y=result.values
plot=sns.barplot(x, y)
plot.set(xlabel='Code departement', ylabel='Nombre de transactions')
sns.barplot(x, y, data=df).set_title('title')
But as you can see in PLOT 1, there are too many bars so I just want the 10 highest, and when I slice x and y :
x=result[:10].index
y=result[:10].values
plot=sns.barplot(x, y)
It prints bars unordered like this :
I checked by printing x and y (sliced) and they are right ordered, Idk what I am missing thank you for your help
You didn't state the version you are using, but probably it isn't the latest. Seaborn as well as matplotlib receive quite some improvements with each new version.
With seaborn 0.11.1 you'd get a warning, as x and y is preferred to be passed via keywords, i.e. sns.barplot(x=x, y=y). The warning tries to avoid confusion with the data= keyword. Apart from that, the numeric x-values would appear sorted numerically.
The order can be controlled via the order= keyword. In this case, sns.barplot(x=x, y=y, order=x). To only have the 10 highest, you can pass sns.barplot(x=x, y=y, order=x[:10]).
Also note that you are creating the bar plot twice (just to change the title?), which can be very confusing. As sns.barplot returns the ax (the subplot onto which the plot has been drawn), the usual approach is ax = sns.barplot(...) and then ax.set_title(...). (The name ax is preferred, to easier understand how matplotlib and seaborn example code can be employed in new code.)
The following example code has been tested with seaborn 0.11.1:
import matplotlib.pyplot as plt
import seaborn as sns
import pandas as pd
import numpy as np
print(sns.__version__)
df = pd.DataFrame({'Code departement': np.random.randint(1, 51, 1000)})
result = df.groupby(['Code departement']).size().sort_values(ascending=False)
x = result.index
y = result.values
ax = sns.barplot(x, y, order=x[:10])
ax.set(xlabel='Code departement', ylabel='Nombre de transactions')
ax.set_title('title')
plt.show()
I seem to have got stuck at a relatively simple problem but couldn't fix it after searching for last hour and after lot of experimenting.
I have two numpy arrays x and y and I am using seaborn's jointplot to plot them:
sns.jointplot(x, y)
Now I want to label the xaxis and yaxis as "X-axis label" and "Y-axis label" respectively. If I use plt.xlabel, the labels goes to the marginal distribution. How can I make them appear on the joint axes?
sns.jointplot returns a JointGrid object, which gives you access to the matplotlib axes and you can then manipulate from there.
import seaborn as sns
import numpy as np
# example data
X = np.random.randn(1000,)
Y = 0.2 * np.random.randn(1000) + 0.5
h = sns.jointplot(X, Y)
# JointGrid has a convenience function
h.set_axis_labels('x', 'y', fontsize=16)
# or set labels via the axes objects
h.ax_joint.set_xlabel('new x label', fontweight='bold')
# also possible to manipulate the histogram plots this way, e.g.
h.ax_marg_y.grid('on') # with ugly consequences...
# labels appear outside of plot area, so auto-adjust
h.figure.tight_layout()
(The problem with your attempt is that functions such as plt.xlabel("text") operate on the current axis, which is not the central one in sns.jointplot; but the object-oriented interface is more specific as to what it will operate on).
Note that the last command uses the figure attribute of the JointGrid. The initial version of this answer used the simpler - but not object-oriented - approach via the matplotlib.pyplot interface.
To use the pyplot interface:
import matplotlib.pyplot as plt
plt.tight_layout()
Alternatively, you can specify the axes labels in a pandas DataFrame in the call to jointplot.
import pandas as pd
import seaborn as sns
x = ...
y = ...
data = pd.DataFrame({
'X-axis label': x,
'Y-axis label': y,
})
sns.jointplot(x='X-axis label', y='Y-axis label', data=data)
Here is the code I'm running:
import pandas as pd
import numpy as np
import seaborn as sns
import matplotlib.pyplot as plt
titanic = sns.load_dataset("titanic")
y =titanic.groupby([titanic.fare//1,'sex']).survived.mean().reset_index() #grouping by 'fare' rounded to an integer and 'sex' and then getting the survivability
x =pd.cut(y.fare, (0,17,35,70,300,515)) #I'm not sure if my format is correct but this is how I cut up the fare values
y['Fare_bins']= x # adding the newly created bins to a new column "Fare_bins' in original dataframe.
#graphing with seaborn
sns.set(style="whitegrid")
g = sns.factorplot(x='Fare_bins', y= 'survived', col = 'sex', kind ='bar' ,data= y,
size=4, aspect =2.5 , palette="muted")
g.despine(left=True)
g.set_ylabels("Survival Probability")
g.set_xlabels('Fare')
plt.show()
The problem I'm having is that Fare_values are showing up as (0,17].
The left side is a circle bracket and the right side is square bracket.
If possible I would like to have something like this:
(0-17) or [0-17]
Next, there seems to be a gap between each bar plot. I was expecting them to be adjoined. There are two graphs being represented, so I don't expect of the bars to be ajoined, but the first 5 bars(first graph)should be connected and the last 5 bars to eachother(second graph).
How can I go about fixing these two issues?
It seems I can add labels.
Just by adding labels to the "cut" method parameters, I can display the Fare_values as I want.
x =pd.cut(y.fare, (0,17,35,70,300,515), labels = ('(0-17)', '(17-35)', '(35-70)', '(70-300)','(300-515)') )
As for the brackets showing around the fare_value groups,
according to the documentation:
right : bool, optional
Indicates whether the bins include the rightmost edge or not. If right == True (the default), then the bins [1,2,3,4] indicate (1,2], (2,3], (3,4].
Still not sure if it's possible to join the bars though.
I am using pandas for graphing data for a cluster of nodes. I find that pandas is repeating color values for the different series, which makes them indistinguishable.
I tried giving custom color values like this and passed the my_colors to the colors field in plot:
my_colors = []
for node in nodes_list:
my_colors.append(rand_color())
rand_color() is defined as follows:
def rand_color():
from random import randrange
return "#%s" % "".join([hex(randrange(16, 255))[2:] for i in range(3)])
But here also I need to avoid color values that are too close to distinguish. I sometimes have as many as 60 nodes (series). Most probably a hard-coded list of color values would be best option?
You can get a list of colors from any colormap defined in Matplotlib, and even custom colormaps, by:
>>> import matplotlib.pyplot as plt
>>> colors = plt.cm.Paired(np.linspace(0,1,60))
Plotting an example with these colors:
>>> plt.scatter( range(60), [0]*60, color=colors )
<matplotlib.collections.PathCollection object at 0x04ED2830>
>>> plt.axis("off")
(-10.0, 70.0, -0.0015, 0.0015)
>>> plt.show()
I found the "Paired" colormap to be especially useful for this kind of things, but you can use any other available or custom colormap.