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I am new to LabVIEW and I am trying to read a code written in LabVIEW. The block diagram is this:
This is the program to input x and y functions into the voltage input. It is meant to give an input voltage in different forms (sine, heartshape , etc.) into the fast-steering mirror or galvano mirror x and y axises.
x and y function controls are for inputting a formula for a function, and then we use "evaluation single value" function to input into a daq assistant.
I understand that { 2*(|-Mpi|)/N }*i + -Mpi*pi goes into the x value. However, I dont understand why we use this kind of formula. Why we need to assign a negative value and then do the absolute value of -M*pi. Also, I don`t understand why we need to divide to N and then multiply by i. And finally, why need to add -Mpi again? If you provide any hints about this I would really appreciate it.
This is just a complicated way to write the code/formula. Given what the code looks like (unnecessary wire bends, duplicate loop-input-tunnels, hidden wires, unnecessary coercion dots, failure to use appropriate built-in 'negate' function) not much care has been given in writing it. So while it probably yields the correct results you should not expect it to do so in the most readable way.
To answer you specific questions:
Why we need to assign a negative value and then do the absolute value
We don't. We can just move the negation immediately before the last addition or change that to a subtraction:
{ 2*(|Mpi|)/N }*i - Mpi*pi
And as #yair pointed out: We are not assigning a value here, we are basically flipping the sign of whatever value the user entered.
Why we need to divide to N and then multiply by i
This gives you a fraction between 0 and 1, no matter how many steps you do in your for-loop. Think of N as a sampling rate. I.e. your mirrors will always do the same movement, but a larger N just produces more steps in between.
Why need to add -Mpi again
I would strongly assume this is some kind of quick-and-dirty workaround for a bug that has not been fixed properly. Looking at the code it seems this +Mpi*pi has been added later on in the development process. And while I don't know what the expected values are I would believe that multiplying only one of the summands by Pi is probably wrong.
I was reviewing some code from a library for Arduino and saw the following if statement in the main loop:
draw_state++;
if ( draw_state >= 14*8 )
draw_state = 0;
draw_state is a uint8_t.
Why is 14*8 written here instead of 112? I initially thought this was done to save space, as 14 and 8 can both be represented by a single byte, but then so can 112.
I can't see why a compiler wouldn't optimize this to 112, since otherwise it would mean a multiplication has to be done every iteration instead of the lookup of a value. This looks to me like there is some form of memory and processing tradeoff.
Does anyone have a suggestion as to why this was done?
Note: I had a hard time coming up with a clear title, so suggestions are welcome.
Probably to explicitly show where the number 112 came from. For example, it could be number of bits in 14 bytes (but of course I don't know the context of the code, so I could be wrong). It would then be more obvious to humans where the value came from, than wiriting just 112.
And as you pointed out, the compiler will probably optimize it, so there will be no multiplication in the machine code.
I'm relatively new to Verilog and I've been working on a project in which I would, in an ideal world, like to have an assignment statement like:
assign isinbufferzone = a > (packetlength-16384) ? 1:0;
The file with this type of line in it will compile, but isinbufferzone doesn't go high when it should. I'm assuming it's not happy with having subtraction in the conditional. I'm able to make the module work by moving stuff around, but the result is more complicated than I think it should need to be and the latency really starts to add up. Does anyone have any thoughts on what the most concise way to do this is? Thank you in advance for your help.
You probably expect isinbufferzone to go high if packetlength is 16384 or less regardless of a, however this is not what happens.
If packetlength is less than 16384, the value packetlength - 16384 is not a negative number −X, but some very large positive number (maybe 232 − X, or 217 − X, I'm not quite sure which, but it doesn't matter), because Verilog does unsigned arithmetic by default. This is called integer overflow.
You could maybe try to solve this by declaring some signals as signed, but in my opinion the safest way is to explicitly handle the overflow case and making sure the subtraction result is only evaluated for packetlength values of 16384 or greater:
assign isinbufferzone = (packetlength < 16384) ? 1 : (a > packetlength - 16384);
I'm attempting to gauge the percentage difference between two images.
Having done a lot of reading I seem to have a number of options but I'm not sure what the best method to follow for:
Ease of coding
Performance.
The methods I've seen are:
Non language specific - academic Image comparison - fast algorithm and Mac specific direct pixel access http://www.markj.net/iphone-uiimage-pixel-color/
Does anyone have any advice about what solutions make most sense for the above two cases and have code samples to show how to apply them?
I've had success calculating the difference between two images using the histogram technique mentioned here. redmoskito's answer in the SO question you linked to was actually my inspiration!
The following is an overview of the algorithm I used:
Convert the images to grayscale—compare one channel instead of three.
Divide each image into an n * n grid of "subimages". Then, for subimage pair:
Calculate their colour composition histograms.
Calculate the absolute difference between the two histograms.
The maximum difference found between two subimages is a measure of the two images' difference. Other metrics could also be used (e.g. the average difference betwen subimages).
As tskuzzy noted in his answer, if your ultimate goal is a binary "yes, these two images are (roughly) the same" or "no, they're not", you need some meaningful threshold value. You could produce such a value by passing images into the algorithm and tweaking the threshold based on its output and how similar you think the images are. A form of machine learning, I suppose.
I recently wrote a blog post on this very topic, albeit as part of a larger goal. I also created a simple iPhone app to demonstrate the algorithm. You can find the source on GitHub; perhaps it will help?
It is really difficult to suggest something when you don't tell us more about the images or the variations. Are they shapes? Are they the different objects and you want to know what class of objects? Are they the same object and you want to distinguish the object instance? Are they faces? Are they fingerprints? Are the objects in the same pose? Under the same illumination?
When you say performance, what exactly do you mean? How large are the images? All in all it really depends. With what you've said if it is only ease of coding and performance I would suggest to just find the absolute value of the difference of pixels. That is super easy to code and about as fast as it gets, but really unlikely to work for anything other than the most synthetic examples.
That being said I would like to point you to: DHOG, GLOH, SURF and SIFT.
You can use fairly basic subtraction technique that the lads above suggested. #carlosdc has hit the nail on the head with regard to the type of image this basic technique can be used for. I have attached an example so you can see the results for yourself.
The first shows a image from a simulation at some time t. A second image was subtracted away from the first which was taken some (simulation) time later t + dt. The subtracted image (in black and white for clarity) then shows how the simulation has changed in that time. This was done as described above and is very powerful and easy to code.
Hope this aids you in some way
This is some old nasty FORTRAN, but should give you the basic approach. It is not that difficult at all. Due to the fact that I am doing it on a two colour pallette you would do this operation for R, G and B. That is compute the intensities or values in each cell/pixal, store them in some array. Do the same for the other image, and subtract one array from the other, this will leave you with some coulorfull subtraction image. My advice would be to do as the lads suggest above, compute the magnitude of the sum of the R, G and B componants so you just get one value. Write that to array, do the same for the other image, then subtract. Then create a new range for either R, G or B and map the resulting subtracted array to this, the will enable a much clearer picture as a result.
* =============================================================
SUBROUTINE SUBTRACT(FNAME1,FNAME2,IOS)
* This routine writes a model to files
* =============================================================
* Common :
INCLUDE 'CONST.CMN'
INCLUDE 'IO.CMN'
INCLUDE 'SYNCH.CMN'
INCLUDE 'PGP.CMN'
* Input :
CHARACTER fname1*(sznam),fname2*(sznam)
* Output :
integer IOS
* Variables:
logical glue
character fullname*(szlin)
character dir*(szlin),ftype*(3)
integer i,j,nxy1,nxy2
real si1(2*maxc,2*maxc),si2(2*maxc,2*maxc)
* =================================================================
IOS = 1
nomap=.true.
ftype='map'
dir='./pictures'
! reading first image
if(.not.glue(dir,fname2,ftype,fullname))then
write(*,31) fullname
return
endif
OPEN(unit2,status='old',name=fullname,form='unformatted',err=10,iostat=ios)
read(unit2,err=11)nxy2
read(unit2,err=11)rad,dxy
do i=1,nxy2
do j=1,nxy2
read(unit2,err=11)si2(i,j)
enddo
enddo
CLOSE(unit2)
! reading second image
if(.not.glue(dir,fname1,ftype,fullname))then
write(*,31) fullname
return
endif
OPEN(unit2,status='old',name=fullname,form='unformatted',err=10,iostat=ios)
read(unit2,err=11)nxy1
read(unit2,err=11)rad,dxy
do i=1,nxy1
do j=1,nxy1
read(unit2,err=11)si1(i,j)
enddo
enddo
CLOSE(unit2)
! substracting images
if(nxy1.eq.nxy2)then
nxy=nxy1
do i=1,nxy1
do j=1,nxy1
si(i,j)=si2(i,j)-si1(i,j)
enddo
enddo
else
print *,'SUBSTRACT: Different sizes of image arrays'
IOS=0
return
endif
* normal finishing
IOS=0
nomap=.false.
return
* exceptional finishing
10 write (*,30) fullname
return
11 write (*,32) fullname
return
30 format('Cannot open file ',72A)
31 format('Improper filename ',72A)
32 format('Error reading from file ',72A)
end
! =============================================================
Hope this is of some use. All the best.
Out of the methods described in your first link, the histogram comparison method is by far the simplest to code and the fastest. However key point matching will provide far more accurate results since you want to know a precise number describing the difference between two images.
To implement the histogram method, I would do the following:
Compute the red, green, and blue histograms of each image
Add up the differences between each bucket
If the difference is above a certain threshold, then the percentage is 0%
Otherwise the colors found in the images are similar. So then do a pixel by pixel comparison and convert the difference into a percentage.
I don't know any precise algorithms for finding the key points of an image. However once you find them for each image you can do a pixel by pixel comparison for each of the key points.
This is a saga which began with the problem of how to do survey weighting. Now that I appear to be doing that correctly, I have hit a bit of a wall (see previous post for details on the import process and where the strata variable came from):
> require(foreign)
> ipums <- read.dta('/path/to/data.dta')
> require(survey)
> ipums.design <- svydesign(id=~serial, strata=~strata, data=ipums, weights=perwt)
Error in if (nbins > .Machine$integer.max) stop("attempt to make a table with >= 2^31 elements") :
missing value where TRUE/FALSE needed
In addition: Warning messages:
1: In pd * (as.integer(cat) - 1L) : NAs produced by integer overflow
2: In pd * nl : NAs produced by integer overflow
> traceback()
9: tabulate(bin, pd)
8: as.vector(data)
7: array(tabulate(bin, pd), dims, dimnames = dn)
6: table(ids[, 1], strata[, 1])
5: inherits(x, "data.frame")
4: is.data.frame(x)
3: rowSums(table(ids[, 1], strata[, 1]) > 0)
2: svydesign.default(id = ~serial, weights = ~perwt, strata = ~strata,
data = ipums)
1: svydesign(id = ~serial, weights = ~perwt, strata = ~strata, data = ipums)
This error seems to come from the tabulate function, which I hoped would be straightforward enough to circumvent, first by changing .Machine$integer.max
> .Machine$integer.max <- 2^40
and when that didn't work the whole source code of tabulate:
> tabulate <- function(bin, nbins = max(1L, bin, na.rm=TRUE))
{
if(!is.numeric(bin) && !is.factor(bin))
stop("'bin' must be numeric or a factor")
#if (nbins > .Machine$integer.max)
if (nbins > 2^40) #replacement line
stop("attempt to make a table with >= 2^31 elements")
.C("R_tabulate",
as.integer(bin),
as.integer(length(bin)),
as.integer(nbins),
ans = integer(nbins),
NAOK = TRUE,
PACKAGE="base")$ans
}
Neither circumvented the problem. Apparently this is one reason why the ff package was created, but what worries me is the extent to which this is a problem I cannot avoid in R. This post seems to indicate that even if I were to use a package that would avoid this problem, I would only be able to access 2^31 elements at a time. My hope was to use sql (either sqlite or postgresql) to get around the memory problems, but I'm afraid I'll spend a while getting that to work, only to run into the same fundamental limit.
Attempting to switch back to Stata doesn't solve the problem either. Again see the previous post for how I use svyset, but the calculation I would like to run causes Stata to hang:
svy: mean age, over(strata)
Whether throwing more memory at it will solve the problem I don't know. I run R on my desktop which has 16 gigs, and I use Stata through a Windows server, currently setting memory allocation to 2000MB, but I could theoretically experiment with increasing that.
So in sum:
Is this a hard limit in R?
Would sql solve my R problems?
If I split it up into many separate files would that fix it (a lot of work...)?
Would throwing a lot of memory at Stata do it?
Am I seriously barking up the wrong tree somehow?
Yes, R uses 32-bit indexes for vectors so they can contain no more than 2^31-1 entries and you are trying to create something with 2^40. There is talk of introducing 64-bit indexes but that will be some way off before appearing in R. Vectors have the stated hard limit and that is it as far as base R is concerned.
I am unfamiliar with the details of what you are doing to offer any further advice on the other parts of your Q.
Why do you want to work with the full data set? Wouldn't a smaller sample that can fit in to the restrictions R places on you be just as useful? You could use SQL to store all the data and query it from R to return a random subset of more appropriate size.
Since this question was asked some time ago, I'd like to point that my answer here uses the version 3.3 of the survey package.
If you check the code of svydesign, you can see that the function that causes all the problem is within a check step that looks whether you should set the nest parameter to TRUE or not. This step can be disabled setting the option check.strata=FALSE.
Of course, you shouldn't disable a check step unless you know what you are doing. In this case, you should be able to decide yourself whether you need to set the nest option to TRUE or FALSE. nest should be set to TRUE when the same PSU (cluster) id is recycled in different strata.
Concretely for the IPUMS dataset, since you are using the serial variable for cluster identification and serial is unique for each household in a given sample, you may want to set nest to FALSE.
So, your survey design line would be:
ipums.design <- svydesign(id=~serial, strata=~strata, data=ipums, weights=perwt, check.strata=FALSE, nest=FALSE)
Extra advice: even after circumventing this problem you will find that the code is pretty slow unless you remap strata to a range from 1 to length(unique(ipums$strata)):
ipums$strata <- match(ipums$strata,unique(ipums$strata))
Both #Gavin and #Martin deserve credit for this answer, or at least leading me in the right direction. I'm mostly answering it separately to make it easier to read.
In the order I asked:
Yes 2^31 is a hard limit in R, though it seems to matter what type it is (which is a bit strange given it is the length of the vector, rather than the amount of memory (which I have plenty of) which is the stated problem. Do not convert strata or id variables to factors, that will just fix their length and nullify the effects of subsetting (which is the way to get around this problem).
sql could probably help, provided I learn how to use it correctly. I did the following test:
library(multicore) # make svy fast!
ri.ny <- subset(ipums, statefips_num %in% c(36, 44))
ri.ny.design <- svydesign(id=~serial, weights=~perwt, strata=~strata, data=ri.ny)
svyby(~incwage, ~strata, ri.ny.design, svymean, data=ri.ny, na.rm=TRUE, multicore=TRUE)
ri <- subset(ri.ny, statefips_num==44)
ri.design <- svydesign(id=~serial, weights=~perwt, strata=~strata, data=ri)
ri.mean <- svymean(~incwage, ri.design, data=ri, na.rm=TRUE)
ny <- subset(ri.ny, statefips_num==36)
ny.design <- svydesign(id=~serial, weights=~perwt, strata=~strata, data=ny)
ny.mean <- svymean(~incwage, ny.design, data=ny, na.rm=TRUE, multicore=TRUE)
And found the means to be the same, which seems like a reasonable test.
So: in theory, provided I can split up the calculation by either using plyr or sql, the results should still be fine.
See 2.
Throwing a lot of memory at Stata definitely helps, but now I'm running into annoying formatting issues. I seem to be able to perform most of the calculation I want (much quicker and with more stability as well) but I can't figure out how to get it into the form I want. Will probably ask a separate question on this. I think the short version here is that for big survey data, Stata is much better out of the box.
In many ways yes. Trying to do analysis with data this big is not something I should have taken on lightly, and I'm far from figuring it out even now. I was using the svydesign function correctly, but I didn't really know what's going on. I have a (very slightly) better grasp now, and it's heartening to know I was generally correct about how to solve the problem. #Gavin's general suggestion of trying out small data with external results to compare to is invaluable, something I should have started ages ago. Many thanks to both #Gavin and #Martin.