How to evenly distribute data in apache pig output files? - apache-pig

I've got a pig-latin script that takes in some xml, uses the XPath UDF to pull out some fields and then stores the resulting fields:
REGISTER udf-lib-1.0-SNAPSHOT.jar;
DEFINE XPath com.blah.udfs.XPath();
docs = LOAD '$input' USING com.blah.storage.XMLLoader('root') as (content:chararray);
results = FOREACH docs GENERATE XPath(content, 'root/id'), XPath(content, 'root/otherField'), content;
store results into '$output';
Note that we're using pig-0.12.0 on our cluster, so I ripped the XPath/XMLLoader classes out of pig-0.14.0 and put them in my own jar so that I could use them in 0.12.
This above script works fine and produces the data that I'm looking for. However, it generates over 1,900 partfiles with only a few mbs in each file. I learned about the default_parallel option, so I set that to 128 to try and get 128 partfiles. I ended up having to add a piece to force a reduce phase to achieve this. My script now looks like:
set default_parallel 128;
REGISTER udf-lib-1.0-SNAPSHOT.jar;
DEFINE XPath com.blah.udfs.XPath();
docs = LOAD '$input' USING com.blah.storage.XMLLoader('root') as (content:chararray);
results = FOREACH docs GENERATE XPath(content, 'root/id'), XPath(content, 'root/otherField'), content;
forced_reduce = FOREACH (GROUP results BY RANDOM()) GENERATE FLATTEN(results);
store forced_reduce into '$output';
Again, this produces the expected data. Also, I now get 128 part-files. My problem now is that the data is not evenly distributed among the part-files. Some have 8 gigs, others have 100 mb. I should have expected this when grouping them by RANDOM() :).
My question is what would be the preferred way to limit the number of part-files yet still have them evenly-sized? I'm new to pig/pig latin and assume I'm going about this in the completely wrong way.
p.s. the reason I care about the number of part-files is because I'd like to process the output with spark and our spark cluster seems to do a lot better with a smaller number of files.

I'm still looking for a way to do this directly from the pig script but for now my "solution" is to repartition the data within the spark process that works on the output of the pig script. I use the RDD.coalesce function to rebalance the data.

From the first code snippet, I am assuming it is map only job since you are not using any aggregates.
Instead of using reducers, set the property pig.maxCombinedSplitSize
REGISTER udf-lib-1.0-SNAPSHOT.jar;
DEFINE XPath com.blah.udfs.XPath();
docs = LOAD '$input' USING com.blah.storage.XMLLoader('root') as (content:chararray);
results = FOREACH docs GENERATE XPath(content, 'root/id'), XPath(content, 'root/otherField'), content;
store results into '$output';
exec;
set pig.maxCombinedSplitSize 1000000000; -- 1 GB(given size in bytes)
x = load '$output' using PigStorage();
store x into '$output2' using PigStorage();
pig.maxCombinedSplitSize - setting this property will make sure each mapper reads around 1 GB data and above code works as identity mapper job, which helps you write data in 1GB part file chunks.

Related

read specific files names in adf pipeline

I have got requirement saying, blob storage has multiple files with names file_1.csv,file_2.csv,file_3.csv,file_4.csv,file_5.csv,file_6.csv,file_7.csv. From these i have to read only filenames from 5 to 7.
how we can achieve this in ADF/Synapse pipeline.
I have repro’d in my lab, please see the below repro steps.
ADF:
Using the Get Metadata activity, get a list of all files.
(Parameterize the source file name in the source dataset to pass ‘*’ in the dataset parameters to get all files.)
Get Metadata output:
Pass the Get Metadata output child items to ForEach activity.
#activity('Get Metadata1').output.childItems
Add If Condition activity inside ForEach and add the true case expression to copy only required files to sink.
#and(greater(int(substring(item().name,4,1)),4),lessOrEquals(int(substring(item().name,4,1)),7))
When the If Condition is True, add copy data activity to copy the current item (file) to sink.
Source:
Sink:
Output:
I took a slightly different approaching using a Filter activity and the endsWith function:
The filter expression is:
#or(or(endsWith(item().name, '_5.csv'),endsWith(item().name, '_6.csv')),endsWith(item().name, '_7.csv'))
Slightly different approaches, similar results, it depends what you need.
You can always do what #NiharikaMoola-MT suggested . But since you already know the range of the files ( 5-7) , I suggest
Declare two paramter as an upper and lower range
Create a Foreach loop and pass the parameter and to create a range[lowerlimit,upperlimit]
Create a paramterized dataset for source .
Use the fileNumber from the FE loop to create a dynamic expression like
#concat('file',item(),'.csv')

Is there a way to execute text gremlin query with PartitionStrategy

I'm looking for an implementation to run text query ex: "g.V().limit(1).toList()" while using the PatitionStrategy in Apache TinkerPop.
I'm attempting to build a REST interface to run queries on selected graph paritions only. I know how to run a raw query using Client, but I'm looking for an implementation where I can create a multi-tenant graph (https://tinkerpop.apache.org/docs/current/reference/#partitionstrategy) and query only selected tenants using raw text query instead of a GLV. Im able to query only selected partitions using pythongremlin, but there is no reference implementation I could find to run a text query on a tenant.
Here is tenant query implementation
connection = DriverRemoteConnection('ws://megamind-ws:8182/gremlin', 'g')
g = traversal().withRemote(connection)
partition = PartitionStrategy(partition_key="partition_key",
write_partition="tenant_a",
read_partitions=["tenant_a"])
partitioned_g = g.withStrategies(partition)
x = partitioned_g.V.limit(1).next() <---- query on partition only
Here is how I execute raw query on entire graph, but Im looking for implementation to run text based queries on only selected partitions.
from gremlin_python.driver import client
client = client.Client('ws://megamind-ws:8182/gremlin', 'g')
results = client.submitAsync("g.V().limit(1).toList()").result().one() <-- runs on entire graph.
print(results)
client.close()
Any suggestions appreciated? TIA
It depends on how the backend store handles text mode queries, but for the query itself, essentially you just need to use the Groovy/Java style formulation. This will work with GremlinServer and Amazon Neptune. For other backends you will need to make sure that this syntax is supported. So from Python you would use something like:
client.submit('
g.withStrategies(new PartitionStrategy(partitionKey: "_partition",
writePartition: "b",
readPartitions: ["b"])).V().count()')

PySpark map function - send n rows instead of one to build a list

I am using Spark 3.x in Python. I have some data (in millions) in CSV files that I have to index in Apache Solr.
I have deployed pysolr module for this purpose
import pysolr
def index_module(row ):
...
solr_client = pysolr.Solr(SOLR_URI)
solr_client.add(row)
...
df = spark.read.format("csv").option("sep", ",").option("quote", "\"").option("escape", "\\").option("header", "true").load("sample.csv")
df.toJSON().map(index_module).count()
index_module module simply get one row of data frame as json and then index in Solr via pysolr module. Pysolr support to index list of documents instead of one. I have to update my logic so that instead of sending one document in each request, I'll send a list of document. Definatelty, it will improve the performance.
How can I achieve this in PySpark ? Is there any alternative or best approach instead of map and toJSON ?
Also, My all activities are completed in transformation functions. I am using count just to start the job. Is there any alternative dummy function (of action type) in spark to do the same?
Finally, I have to create Solr Object each time, is there any alternative for this ?

Can't figure out how to insert keys and values of nested JSON data into SQL rows with NiFi

I'm working on a personal project and very new (learning as I go) to JSON, NiFi, SQL, etc., so forgive any confusing language used here or a potentially really obvious solution. I can clarify as needed.
I need to take the JSON output from a website's API call and insert it into a table in my MariaDB local server that I've set up. The issue is that the JSON data is nested, and two of the key pieces of data that I need to insert are used as variable key objects rather than values, so I don't know how to extract it and put it in the database table. Essentially, I think I need to identify different pieces of the JSON expression and insert them as values, but I'm clueless how to do so.
I've played around with the EvaluateJSON, SplitJSON, and FlattenJSON processors in particular, but I can't make it work. All I can ever do is get the result of the whole expression, rather than each piece of it.
{"5381":{"wind_speed":4.0,"tm_st_snp":26.0,"tm_off_snp":74.0,"tm_def_snp":63.0,"temperature":58.0,"st_snp":8.0,"punts":4.0,"punt_yds":178.0,"punt_lng":55.0,"punt_in_20":1.0,"punt_avg":44.5,"humidity":47.0,"gp":1.0,"gms_active":1.0},
"1023":{"wind_speed":4.0,"tm_st_snp":26.0,"tm_off_snp":82.0,"tm_def_snp":56.0,"temperature":74.0,"off_snp":82.0,"humidity":66.0,"gs":1.0,"gp":1.0,"gms_active":1.0},
"5300":{"wind_speed":17.0,"tm_st_snp":27.0,"tm_off_snp":80.0,"tm_def_snp":64.0,"temperature":64.0,"st_snp":21.0,"pts_std":9.0,"pts_ppr":9.0,"pts_half_ppr":9.0,"idp_tkl_solo":4.0,"idp_tkl_loss":1.0,"idp_tkl":4.0,"idp_sack":1.0,"idp_qb_hit":2.0,"humidity":100.0,"gp":1.0,"gms_active":1.0,"def_snp":23.0},
"608":{"wind_speed":6.0,"tm_st_snp":20.0,"tm_off_snp":53.0,"tm_def_snp":79.0,"temperature":88.0,"st_snp":4.0,"pts_std":5.5,"pts_ppr":5.5,"pts_half_ppr":5.5,"idp_tkl_solo":4.0,"idp_tkl_loss":1.0,"idp_tkl_ast":1.0,"idp_tkl":5.0,"humidity":78.0,"gs":1.0,"gp":1.0,"gms_active":1.0,"def_snp":56.0},
"3396":{"wind_speed":6.0,"tm_st_snp":20.0,"tm_off_snp":60.0,"tm_def_snp":70.0,"temperature":63.0,"st_snp":19.0,"off_snp":13.0,"humidity":100.0,"gp":1.0,"gms_active":1.0}}
This is a snapshot of an output with a couple thousand lines. Each of the numeric keys that you see above (5381, 1023, 5300, etc) are player IDs for the following stats. I have a table set up with three columns: Player ID, Stat ID, and Stat Value. For example, I need that first snippet to be inserted into my table as such:
Player ID Stat ID Stat Value
5381 wind_speed 4.0
5381 tm_st_snp 26.0
5381 tm_off_snp 74.0
And so on, for each piece of data. But I don't know how to have NiFi select the right pieces of data to insert in the right columns.
I believe that it's possible to use jolt to transform your json into a format:
[
{"playerId":"5381", "statId":"wind_speed", "statValue": 0.123},
{"playerId":"5381", "statId":"tm_st_snp", "statValue": 0.456},
...
]
then use PutDatabaseRecord with json reader.
Another approach is to use ExecuteGroovyScript processor.
Add new parameter to it with name SQL.mydb and link it to your DBCP controller service
And use the following script as Script Body parameter:
import groovy.json.JsonSlurper
import groovy.json.JsonBuilder
def ff=session.get()
if(!ff)return
//read flow file content and parse it
def body = ff.read().withReader("UTF-8"){reader->
new JsonSlurper().parse(reader)
}
def results = []
//use defined sql connection to create a batch
SQL.mydb.withTransaction{
def cmd = 'insert into mytable(playerId, statId, statValue) values(?,?,?)'
results = SQL.mydb.withBatch(100, cmd){statement->
//run through all keys/subkeys in flow file body
body.each{pid,keys->
keys.each{k,v->
statement.addBatch(pid,k,v)
}
}
}
}
//write results as a new flow file content
ff.write("UTF-8"){writer->
new JsonBuilder(results).writeTo(writer)
}
//transfer to success
REL_SUCCESS << ff

Export Data from SQL to CSV

I'm using EntityFramework to access a sql server to return data. The data needs to be formatted into a tab delimited file. I then want to compress the data to return to the user.
I can do the select, and then iterate over the EF objects and format all the data into one big string- but this takes forever (I'm returning abouit 800k rows). The query itself is quite fast, but its just the creating of the csv file in memory that is killing it.
I found this post that describes how to use sqlcmd to do this directly as an export (but with csv) with sql which seems very promising, but I'm unclear how to pass the -E and other parameters to ExecuteSqlCommand()... or if it is even meant for this.
I tried to do something like this:
var test = context.Database.ExecuteSqlCommand("select Chromosome c,
StartLocation sl, Endlocation el, GeneName gn from Gencode where c = chr1",
"-E", "-Q", new SqlParameter("-s", "\t"));
But of course that didn't work...
Any suggestions as to how to go about this? I'm using EF 6.1 if that matters.
Alternate option using simple method.
F5-->store result--> keep file name