I can use accurev wip command to find the element changed in other workspaces.
How can I know in Accurev CLI (or GUI) that the element is modified on other streams, not workspaces?
You will need to create a script to obtain this info.
Basically you will run the command:
accurev show -p -fxg -s "Stream Name" -R streams
You will parse this list looking for "hasDefaultGroup="true"".
For each stream that matches, execute the 'accurev stat -d -s' command.
Related
After making a full forensic copy of a harddrive using dd, I would like to keep up with changes between the original and backup harddisc, therefore I started using rsync.
Whenever, I run
sync -a -v -n --progress /media/drive1 /media/drive2
the command would start listing all files contained in drive1. However, only a couple of them has changed after I did DD.
Trying that on a single folder
sync -a -v -n --progress /media/drive1/folder /media/drive2
works fine and just displays the new files in that folder - those which are not contained in /media/drive2/folder.
However, executing the command on the level of both volumes
sync -a -v -n --progress /media/drive1 /media/drive2
does not account for the differentials, contrary to the documentation which is everywhere available, but takes all files which are already on both drives.
What is my mistake?
The way rsync treats its source and destination paths is easy to get wrong. When you use the command:
sync -a -v -n --progress /media/drive1 /media/drive2
...it tries to sync the drive1 folder into drive2; that is, it creates and populates /media/drive2/drive1. When you add "/folder" to the source path, it works as expected because then it's trying to sync with /media/drive2/folder, which is what you want.
Fortunately, the solution is easy: add "/" to the end of the source path, which tells it to sync the contents of drive1 into drive2, rather than the folder itself:
sync -a -v -n --progress /media/drive1/ /media/drive2
BTW, I'd recommend adding --dry-run to make sure it's doing what you want before running it "for real". You'll probably also have to delete /media/drive2/drive1.
I'm trying to use the --immediate-submit on a PBSPro cluster. I tried using an in-place modification of the dependencies string to adapt it to PBSPro, similar to what is done here.
snakemake --cluster "qsub -l wd -l mem={cluster.mem}GB -l ncpus={threads} -e {cluster.stderr} -q {cluster.queue} -l walltime={cluster.walltime} -o {cluster.stdout} -S /bin/bash -W $(echo '{dependencies}' | sed 's/^/depend=afterok:/g' | sed 's/ /:/g')"
This last part gets converted into, for example:
-W depend=afterok: /g/data1a/va1/dk0741/analysis/2018-03-25_marmo_test/.snakemake/tmp.cyrhf51c/snakejob.trimmomatic_pe.7.sh
There are two problems here:
How can I get the dependencies string to output job ID instead of the script path? The qsub command normally outputs the job ID to stdout, so I'm not sure why it's not doing so here.
How do I get rid of the space after afterok:? I've tried everything!
As an aside, it would be helpful if there were some option to debug the submission or not to delete the tmp.cyrhf51c directory in .snakemake -- is there some way to do this?
Thanks,
David
I suggest to use a profile for this, instead of trying to find an ad-hoc solution. This will also help with debugging. E.g., there is already a pbs-torque profile available (https://github.com/Snakemake-Profiles/pbs-torque), probably there is not much to change towards pbspro?
Accurev CLI documentation does not mention any command to move workspace from one stream to another without the need of creating a new workspace.
Look in manual at the "accurev chws" command
Try running this command:
accurev chws -w "workspace name" -b "name of new backing stream"
Once complete, you will need to update your workspace:
accurev update
I need to download my source code from Rtc using command line ? Is there any command available to perform this activity?
Assuming you already have a repository workspace, then the CLI command would be scm load. Documentation is here.
To load into the current directory:
scm login -r https://server.com:9443/jazz -u user -P password -n repoNickname
scm load -r repoNickname "Workspace Name"
If the workspace name is not unique in the server, you can try the list workspace command to look for workspaces owned by you:
scm list workspaces -r repoNickname -c userName
The results will contain an alias which can be used in place of the workspace name in the load command. Alternatively you can find the UUID for your workspace by finding your workspace in the web UI and taking note of the url which will contain the workspace UUID.
Is there any command to update my workspace forcedly in Accurev, directly replace the local files with the backed files, and don't care about the conflict files, modified files and so on?
I really miss the cvs command cvs update -C -d
According to question, I have similar issues. Usually I just use following commands:
accurev update -9
accurev pop -O -R .
accurev update
No, you will need to run a few operations. You can create a script to force update your workspace.
Basically, you will generate a list of all the modified, kept, overlap, member files, then purge those files, then update your workspace.
Check out the stat section in the CLI manual.
What You can do is delete all the local files from the file system and then do a:
accurev pop -R <path to local workspace directory>
I had similar issue; First take a back up of existing workspace, then Delete all the files in the local work-space folder. Click update button on Accurev. All files will be re-loaded on the workspace.
If you just want to undo all changes you have done in the workspace:
accurev stat -R -m -fl . | xargs -n 1 accurev purge
You can use similar command with rm / accurev pop to force refetch from backend. You can also vary the flags, -m for modified, -k for kept, -a for all.