I just upgraded & updated my homebrew and now if I run brew doctor, I get the following errors and it fails to run. May I deleted the unexpected header files or is there a better solution?
Warning: Your XQuartz (2.7.6) is outdated
Please install XQuartz 2.7.7:
https://xquartz.macosforge.org
Warning: Unbrewed header files were found in /usr/local/include.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.
Unexpected header files:
/usr/local/include/node/ares.h
/usr/local/include/node/ares_version.h
/usr/local/include/node/eio-emul.h
/usr/local/include/node/ev-emul.h
/usr/local/include/node/node.h
/usr/local/include/node/node_buffer.h
/usr/local/include/node/node_object_wrap.h
/usr/local/include/node/node_version.h
/usr/local/include/node/uv-private/eio.h
/usr/local/include/node/uv-private/ev.h
/usr/local/include/node/uv-private/ngx-queue.h
/usr/local/include/node/uv-private/tree.h
/usr/local/include/node/uv-private/uv-unix.h
/usr/local/include/node/uv-private/uv-win.h
/usr/local/include/node/uv.h
/usr/local/include/node/v8-debug.h
/usr/local/include/node/v8-preparser.h
/usr/local/include/node/v8-profiler.h
/usr/local/include/node/v8-testing.h
/usr/local/include/node/v8.h
/usr/local/include/node/v8stdint.h
Basically, you just need to upgrade the XQuartz in your system and ignore all the other warnings.
You may build some software that utilise X11 components, so just go to https://xquartz.macosforge.org/, download and install the latest version.
It is obvious that you install node.js without using homebrew so that the header files are added into /use/local/include/ not via homebrew and confuse it. Unless you encounter some kind of problems as mentioned in the warning message, you can just ignore them.
Related
I'm on a Mac X1, Monterey.
I've installed prophet and run into this issue when trying to fit a model.
RuntimeError: Error during optimization: console log output:
dyld[90668]: Library not loaded: #rpath/libtbb.dylib
Referenced from: /Users/{username}/opt/anaconda3/lib/python3.9/site-packages/prophet/stan_model/prophet_model.bin
Reason: tried: '/private/var/folders/cd/dfrqgp4s4ll55cwb7rtgccbw0000gq/T/pip-install-rjpuj450/prophet_d7e4cce10e414c89a572fe3605ae9269/build/lib.macosx-11.1-arm64-cpython-39/prophet/stan_model/cmdstan-2.26.1/stan/lib/stan_math/lib/tbb/libtbb.dylib' (no such file), '/private/var/folders/cd/dfrqgp4s4ll55cwb7rtgccbw0000gq/T/pip-install-rjpuj450/prophet_d7e4cce10e414c89a572fe3605ae9269/build/lib.macosx-11.1-arm64-cpython-39/prophet/stan_model/cmdstan-2.26.1/stan/lib/stan_math/lib/tbb/libtbb.dylib' (no such file), '/usr/local/lib/libtbb.dylib' (no such file), '/usr/lib/libtbb.dylib' (no such file)
I know this has to do with the wrong paths being searched. I can find the dylib in
/Users/{user}/opt/anaconda3/lib/python3.9/site-packages/prophet/stan_model/cmdstan-2.26.1/stan/lib/stan_math/lib/tbb/
But, it seems prophet doesn't know to look there. I'm curious how I can update/fix either the rpath variable or find another solution?
I tried to create a symbolic link with sudo ln -s, but don't have permissions on the laptop.
TIA!
I got it to work on Apple Silicon (M1 Max in my case) by installing older versions of both pystan and prophet:
pip install pystan==2.19.1.1
pip install prophet==1.0
The other important piece of the puzzle is that you should use Python 3.8 to get it working.
Installing older versions of the libraries and using Python 3.8 are both talked about in issue #2002 on Github, but there's not really an explanation of the libtbb.dylib error message.
I got this problem when I use git svn to checkout my svn repos.Then I follow some suggestions from website and try to reinstall svn:core by
sudo cpan SVN:Core
but I still got following error when I try to check out a svn repos.
dyld: lazy symbol binding failed: Symbol not found: _svn_ra_make_callbacks
Referenced from: /usr/local/Cellar/perl/5.32.0/lib/perl5/site_perl/5.32.0/darwin-thread-
multi-2level/auto/SVN/_Ra/_Ra.bundle
Expected in: flat namespace
dyld: Symbol not found: _svn_ra_make_callbacks
Referenced from: /usr/local/Cellar/perl/5.32.0/lib/perl5/site_perl/5.32.0/darwin-thread-
multi-2level/auto/SVN/_Ra/_Ra.bundle
Expected in: flat namespace
error: git-svn died of signal 6
I check from website that the function is declared in the library header:
libsvn_swig_perl/swigutil_pl.h
But I didn't find error message related this lib (I did see some warning) when I install SVN:Core.
Are there something I need to setup or check for this issue when I install SVN:Core to make my git svn check out work properly?
Thank you~~
Eric
You should not need to manually install Perl package SVN::Core. The Homebrew formula subversion already does that — but, only for Intel hardware currently, as you can see. Volunteering to contribute other hardware support would be warmly welcome.
That formula (script) is what powers brew install subversion. Does this command work for you at all? Can you run svn info? If not, then you should first of all get svn installation working — and only then add git-svn on top. This is because the dependency structure looks like this:
If the bottom-most box is broken for you, then messing with Perl packages is guaranteed to not help.
I check from website that the function is declared in the library header
Please be specific; which website? I don't see any _svn_ra_make_callbacks in the latest upstream source, neither in 1.14.1 tarball.
I am getting this error When i have Started the apache server
Starting httpd: /usr/sbin/httpd: symbol lookup error: /usr/sbin/httpd:
undefined symbol: apr_bucket_alloc_aligned_floor
Please help me on this.
i got this error too this morning, it was a module conflict.
Removed the conflicting module, then ran easyapache 4 and reprovisioned the profile in WHM.
The conflicting module was:
Error: Multilib version problems found. This often means that the root
cause is something else and multilib version checking is just
pointing out that there is a problem. Eg.:
1. You have an upgrade for ea-apache24-mod_cloudflare which is missing some
dependency that another package requires. Yum is trying to
solve this by installing an older version of ea-apache24-mod_cloudflare of the
different architecture. If you exclude the bad architecture
yum will tell you what the root cause is (which package
requires what). You can try redoing the upgrade with
--exclude ea-apache24-mod_cloudflare.otherarch ... this should give you an error
message showing the root cause of the problem.
2. You have multiple architectures of ea-apache24-mod_cloudflare installed, but
yum can only see an upgrade for one of those arcitectures.
If you don't want/need both architectures anymore then you
can remove the one with the missing update and everything
will work.
3. You have duplicate versions of ea-apache24-mod_cloudflare installed already.
You can use "yum check" to get yum show these errors.
...you can also use --setopt=protected_multilib=false to remove
this checking, however this is almost never the correct thing to
do as something else is very likely to go wrong (often causing
much more problems).
Protected multilib versions: ea-apache24-mod_cloudflare-1.2.0-.5.47.x86_64 != ea-apache24-mod_cloudflare-1.2.0-.5.37.i686
Run yum update to see the error, or what ever command your OS has to check for updates.
Regards,
Tommy
If dealing with cPanel, check for updates via yum. In my case, updates were needed, so updated all yum packages.
I then found PHP scripts were not being parsed. Check that the PHP handler is set to whatever your handler should be. In my case, the handler was set to "None".
I hope this helps!
So I've been working on a Vue.js project for couple times now, and I am facing a problem I've never seen before.
Trying to git pull the project on another computer, or even downloading the project as a zip file, when it's time to npm install, vue-material module fails and the whole thing cannot be run.
It goes this way, with vie-material :
vue-material#1.0.0 postinstall C:\<my_things>\node_modules\vue-material
sh build/git-hooks/install.sh
Then I see this :
/usr/bin/bash: build/git-hooks/install.sh: No such file or directory
Then the modules' tree shows in the terminal, and at the end, I can see all the errors related to vue-material, with this statement :
Tell the author that this fails on your system:
sh build/git-hooks/install.sh
By the way, I tried to crate a brand new Vue project, and tried to add vue-material inside, no problem, so it has to do with my project.
Obviously though, /usr/bin/bash does not exist, since I'm running Windows 10.
Any knowledge on npm's installing routine ? I'm out of solution to try...
Can you share your package.json file?
I had this same problem just now and found that NPM could possibly be installing the incorrect version. Where I had "^vue-material": "1.0.0-beta-7" NPM was installing version 1.0.0 instead of 1.0.0-beta-7. If you remove the ^ then it may work for you. This is where I found the answer that helped me.
https://github.com/vuematerial/vue-material/issues/1155
Well, after couple times figuring out what was wrong, I got this :
I tried to use yarn and it told me that my node version was too old (vue-material needed 7.0+ and my node was 6.9, or at least that is what yarn told me), so I got myself the 8.9.3 node.
After this I tried to use yarn again, and the error with that bash script showed again.... then I just tried to use npm install again, and it worked just fine...
I don't know about the bash script thing, but one thing to remember is to always check for node and npm's version when errors happend.... (and yarn looks very cool and simple imo ^^).
You kinda made me think about a version problem though, I got you that ! :D
Problem solved....
I am not getting TBB to work. I am following the steps in the "Getting started" document.
I am doing the following steps:
downloading the linux files + the sources files.
extracting them in 1 directory
calling make
going to tbb.../bin calling source tbbvars.sh intel64
going to examples/Getting_started/sub_string_finder
calling make
I then get the error:
sub_string_finder.cpp:32:30: fatal error: tbb/parallel_for.h: No such file or directory
I really googled a lot but can't find any related stuff.
I did also try to add some -I statement but it didnt help
I assume it is kind of a including/linking problem but I dont know how to fix.
This is all done on fedora 16 64bit. (kernel 3.1.4) // TBB version 4.0
The solution was to install tbb-devel package.