Library not loaded - ogr2ogr - topojson (Mike Bostock's d3.js map tutorial) - gdal

I'm trying to use ogr2ogr to filter a shapefile. I'm working through Mike Bostock's Let's Make a Map tutorial. A bit of googling - including here - hasn't led to any solutions yet. I'm also VERY new to topojson (and shapefiles in general; my background is in economics/statistical software like Stata), so I'm not sure what I'm doing and where things are going wrong. Either way - here's the error result I'm getting:
dyld: Library not loaded: /usr/local/lib/liblwgeom-2.1.1.dylib
Referenced from: /usr/local/Cellar/libspatialite/4.1.1/lib/libspatialite.5.dylib
Reason: image not found
Trace/BPT trap: 5
No idea what liblwgeom-2.1.1.dylib is, what it does, where I get it, etc. Google hasn't helped much on defining it either.
FWIW, I'm on a Mac, I brew installed npm and gdal, and then npm installed topojson.
Thanks,
a
Edited to add: I just brew reinstalled gdal, because I remembered getting a warning (Caveats). See below:
==> Caveats
For non-homebrew python (2.x), you need to amend your PYTHONPATH like so:
export PYTHONPATH=/usr/local/lib/python2.7/site-packages:$PYTHONPATH
This version of GDAL was built with Python support. In addition to providing
modules that makes GDAL functions available to Python scripts, the Python
binding provides additional command line tools.
I actually tried to run export PYTHONPATH=/usr/local/lib/python2.7/site-packages:$PYTHONPATH literally as-is, and it returned nothing. (Not sure if something happened in the background?) Basically fumbling in the dark!

Related

Library not loaded: #rpath/libtbb.dylib in Prophet / Python

I'm on a Mac X1, Monterey.
I've installed prophet and run into this issue when trying to fit a model.
RuntimeError: Error during optimization: console log output:
dyld[90668]: Library not loaded: #rpath/libtbb.dylib
Referenced from: /Users/{username}/opt/anaconda3/lib/python3.9/site-packages/prophet/stan_model/prophet_model.bin
Reason: tried: '/private/var/folders/cd/dfrqgp4s4ll55cwb7rtgccbw0000gq/T/pip-install-rjpuj450/prophet_d7e4cce10e414c89a572fe3605ae9269/build/lib.macosx-11.1-arm64-cpython-39/prophet/stan_model/cmdstan-2.26.1/stan/lib/stan_math/lib/tbb/libtbb.dylib' (no such file), '/private/var/folders/cd/dfrqgp4s4ll55cwb7rtgccbw0000gq/T/pip-install-rjpuj450/prophet_d7e4cce10e414c89a572fe3605ae9269/build/lib.macosx-11.1-arm64-cpython-39/prophet/stan_model/cmdstan-2.26.1/stan/lib/stan_math/lib/tbb/libtbb.dylib' (no such file), '/usr/local/lib/libtbb.dylib' (no such file), '/usr/lib/libtbb.dylib' (no such file)
I know this has to do with the wrong paths being searched. I can find the dylib in
/Users/{user}/opt/anaconda3/lib/python3.9/site-packages/prophet/stan_model/cmdstan-2.26.1/stan/lib/stan_math/lib/tbb/
But, it seems prophet doesn't know to look there. I'm curious how I can update/fix either the rpath variable or find another solution?
I tried to create a symbolic link with sudo ln -s, but don't have permissions on the laptop.
TIA!
I got it to work on Apple Silicon (M1 Max in my case) by installing older versions of both pystan and prophet:
pip install pystan==2.19.1.1
pip install prophet==1.0
The other important piece of the puzzle is that you should use Python 3.8 to get it working.
Installing older versions of the libraries and using Python 3.8 are both talked about in issue #2002 on Github, but there's not really an explanation of the libtbb.dylib error message.

Why my git svn with error "dyld: lazy symbol binding failed: Symbol not found: _svn_ra_make_callbacks"

I got this problem when I use git svn to checkout my svn repos.Then I follow some suggestions from website and try to reinstall svn:core by
sudo cpan SVN:Core
but I still got following error when I try to check out a svn repos.
dyld: lazy symbol binding failed: Symbol not found: _svn_ra_make_callbacks
Referenced from: /usr/local/Cellar/perl/5.32.0/lib/perl5/site_perl/5.32.0/darwin-thread-
multi-2level/auto/SVN/_Ra/_Ra.bundle
Expected in: flat namespace
dyld: Symbol not found: _svn_ra_make_callbacks
Referenced from: /usr/local/Cellar/perl/5.32.0/lib/perl5/site_perl/5.32.0/darwin-thread-
multi-2level/auto/SVN/_Ra/_Ra.bundle
Expected in: flat namespace
error: git-svn died of signal 6
I check from website that the function is declared in the library header:
libsvn_swig_perl/swigutil_pl.h
But I didn't find error message related this lib (I did see some warning) when I install SVN:Core.
Are there something I need to setup or check for this issue when I install SVN:Core to make my git svn check out work properly?
Thank you~~
Eric
You should not need to manually install Perl package SVN::Core. The Homebrew formula subversion already does that — but, only for Intel hardware currently, as you can see. Volunteering to contribute other hardware support would be warmly welcome.
That formula (script) is what powers brew install subversion. Does this command work for you at all? Can you run svn info? If not, then you should first of all get svn installation working — and only then add git-svn on top. This is because the dependency structure looks like this:
If the bottom-most box is broken for you, then messing with Perl packages is guaranteed to not help.
I check from website that the function is declared in the library header
Please be specific; which website? I don't see any _svn_ra_make_callbacks in the latest upstream source, neither in 1.14.1 tarball.

Couchapp - default template not found when running `couchapp generate ...` on Windows

After thorough browsing I decided to post here as I could not find a working prompt on the problem.
I installed CouchDB and Couchapp (in version 1.0.0, freshest one on Github) on Win8 machine and when I try to run couchapp generate app contacts I get:
2014-11-21 22:01:00 [ERROR] couchapp error: Can't create a CouchApp in C:\Users\
Michal\Desktop\contacts: default template not found.
I have not so far dug deeper into the Couchapp code to see if I can fix it. Fixes applied by Couchapp creator, Benoit, don't work for me.
All advice/constructive criticism much appreciated.
OK, I got it working - all that was needed was to include an environment variable for couchapp.exe. So, if you are installing a standalone version of Couchapp from the downloads section ( https://github.com/downloads/couchapp/couchapp/couchapp-1.0.0-win.zip, e.g. ) you NEED TO MAKE SURE that you first of all execute the installer and then point you environment variables Path to it, that's all. Hope it helps.

casperjs.bat on windows fails with cannot find module cli.js error

I'm trying out casperJS to run some automated tests. On windows. I followed this installation guide but am stuck.
when I try to run a simple test from the command line like this:
casperjs.bat smoketest.js
I get the following error:
Error: Cannot find module 'C:/code/base/main/Shared/casperjs\modules\cli.js'
I checked, and the file cli.js does exist under the specified path.
I thought the problem could be the mixture of forward and backward slashes in the path, but I edited the bootstrap.js casper code to hard code the path and it made no difference - it still the cannot find module.
I'm have tried this using phantomJS version 1.9.0, and 1.8.2.
Anyone know what I am doing wrong?
Has anyone had success running casper on Windows?
This is due to a bug in PhantomJS 1.9.0 that does not allow for absolute path loading in Windows. Afaik, this should only be apparent if you are using a master build of CasperJS (v1.1).
This bug has been fixed, but is not yet in the Windows binary. You can compile it yourself if you'd like, but that can take quite a bit of time.
I was using the master build of casper. With the latest released version, 1.0.2, it works fine.

Not getting TBB to compile test examples

I am not getting TBB to work. I am following the steps in the "Getting started" document.
I am doing the following steps:
downloading the linux files + the sources files.
extracting them in 1 directory
calling make
going to tbb.../bin calling source tbbvars.sh intel64
going to examples/Getting_started/sub_string_finder
calling make
I then get the error:
sub_string_finder.cpp:32:30: fatal error: tbb/parallel_for.h: No such file or directory
I really googled a lot but can't find any related stuff.
I did also try to add some -I statement but it didnt help
I assume it is kind of a including/linking problem but I dont know how to fix.
This is all done on fedora 16 64bit. (kernel 3.1.4) // TBB version 4.0
The solution was to install tbb-devel package.