Using jupyterlab, i receive a KeyError: 'Default' when using plt.tight_layout() in combination with %matplotlib widget. The following code reproduces the issue:
import matplotlib.pyplot as plt
import numpy as np
%matplotlib widget
x=np.linspace(0,10)
y=x**2
plt.plot(x,y)
plt.tight_layout()
The complete error message is the following:
---------------------------------------------------------------------------
KeyError Traceback (most recent call last)
~/anaconda3/lib/python3.8/site-packages/matplotlib/backend_bases.py in _wait_cursor_for_draw_cm(self)
3024 try:
-> 3025 self.canvas.set_cursor(tools.Cursors.WAIT)
3026 yield
~/anaconda3/lib/python3.8/site-packages/matplotlib/backends/backend_webagg_core.py in set_cursor(self, cursor)
209 }, cursor=cursor)
--> 210 self.send_event('cursor', cursor=cursor)
211
~/anaconda3/lib/python3.8/site-packages/matplotlib/backends/backend_webagg_core.py in send_event(self, event_type, **kwargs)
391 if self.manager:
--> 392 self.manager._send_event(event_type, **kwargs)
393
~/anaconda3/lib/python3.8/site-packages/matplotlib/backends/backend_webagg_core.py in _send_event(self, event_type, **kwargs)
540 for s in self.web_sockets:
--> 541 s.send_json(payload)
542
~/anaconda3/lib/python3.8/site-packages/ipympl/backend_nbagg.py in send_json(self, content)
180 if content['type'] == 'cursor':
--> 181 self._cursor = cursors_str[content['cursor']]
182
KeyError: 'wait'
During handling of the above exception, another exception occurred:
KeyError Traceback (most recent call last)
/tmp/ipykernel_119035/3466922198.py in <module>
7 y=x**2
8 plt.plot(x,y)
----> 9 plt.tight_layout()
~/anaconda3/lib/python3.8/site-packages/matplotlib/pyplot.py in tight_layout(pad, h_pad, w_pad, rect)
2300 #_copy_docstring_and_deprecators(Figure.tight_layout)
2301 def tight_layout(*, pad=1.08, h_pad=None, w_pad=None, rect=None):
-> 2302 return gcf().tight_layout(pad=pad, h_pad=h_pad, w_pad=w_pad, rect=rect)
2303
2304
~/anaconda3/lib/python3.8/site-packages/matplotlib/figure.py in tight_layout(self, pad, h_pad, w_pad, rect)
3186 "compatible with tight_layout, so results "
3187 "might be incorrect.")
-> 3188 renderer = _get_renderer(self)
3189 with getattr(renderer, "_draw_disabled", nullcontext)():
3190 kwargs = get_tight_layout_figure(
~/anaconda3/lib/python3.8/site-packages/matplotlib/backend_bases.py in _get_renderer(figure, print_method)
1542 figure.canvas._get_output_canvas(None, fmt), f"print_{fmt}")
1543 try:
-> 1544 print_method(io.BytesIO())
1545 except Done as exc:
1546 renderer, = figure._cachedRenderer, = exc.args
~/anaconda3/lib/python3.8/site-packages/matplotlib/backend_bases.py in wrapper(*args, **kwargs)
1641 kwargs.pop(arg)
1642
-> 1643 return func(*args, **kwargs)
1644
1645 return wrapper
~/anaconda3/lib/python3.8/site-packages/matplotlib/_api/deprecation.py in wrapper(*inner_args, **inner_kwargs)
410 else deprecation_addendum,
411 **kwargs)
--> 412 return func(*inner_args, **inner_kwargs)
413
414 DECORATORS[wrapper] = decorator
~/anaconda3/lib/python3.8/site-packages/matplotlib/backends/backend_agg.py in print_png(self, filename_or_obj, metadata, pil_kwargs, *args)
538 *metadata*, including the default 'Software' key.
539 """
--> 540 FigureCanvasAgg.draw(self)
541 mpl.image.imsave(
542 filename_or_obj, self.buffer_rgba(), format="png", origin="upper",
~/anaconda3/lib/python3.8/site-packages/matplotlib/backends/backend_agg.py in draw(self)
431 self.renderer = self.get_renderer(cleared=True)
432 # Acquire a lock on the shared font cache.
--> 433 with RendererAgg.lock, \
434 (self.toolbar._wait_cursor_for_draw_cm() if self.toolbar
435 else nullcontext()):
~/anaconda3/lib/python3.8/contextlib.py in __enter__(self)
111 del self.args, self.kwds, self.func
112 try:
--> 113 return next(self.gen)
114 except StopIteration:
115 raise RuntimeError("generator didn't yield") from None
~/anaconda3/lib/python3.8/site-packages/matplotlib/backend_bases.py in _wait_cursor_for_draw_cm(self)
3026 yield
3027 finally:
-> 3028 self.canvas.set_cursor(self._lastCursor)
3029 else:
3030 yield
~/anaconda3/lib/python3.8/site-packages/matplotlib/backends/backend_webagg_core.py in set_cursor(self, cursor)
208 backend_tools.Cursors.RESIZE_VERTICAL: 'ns-resize',
209 }, cursor=cursor)
--> 210 self.send_event('cursor', cursor=cursor)
211
212 def set_image_mode(self, mode):
~/anaconda3/lib/python3.8/site-packages/matplotlib/backends/backend_webagg_core.py in send_event(self, event_type, **kwargs)
390 def send_event(self, event_type, **kwargs):
391 if self.manager:
--> 392 self.manager._send_event(event_type, **kwargs)
393
394
~/anaconda3/lib/python3.8/site-packages/matplotlib/backends/backend_webagg_core.py in _send_event(self, event_type, **kwargs)
539 payload = {'type': event_type, **kwargs}
540 for s in self.web_sockets:
--> 541 s.send_json(payload)
542
543
~/anaconda3/lib/python3.8/site-packages/ipympl/backend_nbagg.py in send_json(self, content)
179 # Change in the widget state?
180 if content['type'] == 'cursor':
--> 181 self._cursor = cursors_str[content['cursor']]
182
183 elif content['type'] == 'message':
KeyError: 'default'
I'm working with a Dask Cluster on GCP. I'm using this code to deploy it:
from dask_cloudprovider.gcp import GCPCluster
from dask.distributed import Client
enviroment_vars = {
'EXTRA_PIP_PACKAGES': '"gcsfs"'
}
cluster = GCPCluster(
n_workers=32,
docker_image='daskdev/dask:2021.2.0',
env_vars=enviroment_vars,
network='my-network',
#filesystem_size=150,
machine_type='e2-standard-16',
projectid='my-project-id',
zone='us-central1-a',
on_host_maintenance="MIGRATE"
client = Client(cluster)
Then I read csv files, with the following code:
import dask.dataframe as dd
import csv
col_dtypes = {
'var1': 'float64',
'var2': 'object',
'var3': 'object',
'var4': 'float64'
}
df = dd.read_csv('gs://my_bucket/files-*.csv', blocksize=None, dtype= col_dtypes)
df = df.persist()
Everything works fine, but when I try to do some queries, or calculation, I get an error. For instance this piece of code:
df.var1.value_counts().compute()
This is the output:
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
<ipython-input-14-711a7c21ed42> in <module>
----> 1 df.var1.value_counts().compute()
/opt/conda/lib/python3.8/site-packages/dask/base.py in compute(self, **kwargs)
279 dask.base.compute
280 """
--> 281 (result,) = compute(self, traverse=False, **kwargs)
282 return result
283
/opt/conda/lib/python3.8/site-packages/dask/base.py in compute(*args, **kwargs)
561 postcomputes.append(x.__dask_postcompute__())
562
--> 563 results = schedule(dsk, keys, **kwargs)
564 return repack([f(r, *a) for r, (f, a) in zip(results, postcomputes)])
565
/opt/conda/lib/python3.8/site-packages/distributed/client.py in get(self, dsk, keys, workers, allow_other_workers, resources, sync, asynchronous, direct, retries, priority, fifo_timeout, actors, **kwargs)
2653 should_rejoin = False
2654 try:
-> 2655 results = self.gather(packed, asynchronous=asynchronous, direct=direct)
2656 finally:
2657 for f in futures.values():
/opt/conda/lib/python3.8/site-packages/distributed/client.py in gather(self, futures, errors, direct, asynchronous)
1962 else:
1963 local_worker = None
-> 1964 return self.sync(
1965 self._gather,
1966 futures,
/opt/conda/lib/python3.8/site-packages/distributed/client.py in sync(self, func, asynchronous, callback_timeout, *args, **kwargs)
836 return future
837 else:
--> 838 return sync(
839 self.loop, func, *args, callback_timeout=callback_timeout, **kwargs
840 )
/opt/conda/lib/python3.8/site-packages/distributed/utils.py in sync(loop, func, callback_timeout, *args, **kwargs)
338 if error[0]:
339 typ, exc, tb = error[0]
--> 340 raise exc.with_traceback(tb)
341 else:
342 return result[0]
/opt/conda/lib/python3.8/site-packages/distributed/utils.py in f()
322 if callback_timeout is not None:
323 future = asyncio.wait_for(future, callback_timeout)
--> 324 result[0] = yield future
325 except Exception as exc:
326 error[0] = sys.exc_info()
/opt/conda/lib/python3.8/site-packages/tornado/gen.py in run(self)
760
761 try:
--> 762 value = future.result()
763 except Exception:
764 exc_info = sys.exc_info()
/opt/conda/lib/python3.8/site-packages/distributed/client.py in _gather(self, futures, errors, direct, local_worker)
1827 exc = CancelledError(key)
1828 else:
-> 1829 raise exception.with_traceback(traceback)
1830 raise exc
1831 if errors == "skip":
/opt/conda/lib/python3.8/site-packages/dask/optimization.py in __call__()
961 if not len(args) == len(self.inkeys):
962 raise ValueError("Expected %d args, got %d" % (len(self.inkeys), len(args)))
--> 963 return core.get(self.dsk, self.outkey, dict(zip(self.inkeys, args)))
964
965 def __reduce__(self):
/opt/conda/lib/python3.8/site-packages/dask/core.py in get()
149 for key in toposort(dsk):
150 task = dsk[key]
--> 151 result = _execute_task(task, cache)
152 cache[key] = result
153 result = _execute_task(out, cache)
/opt/conda/lib/python3.8/site-packages/dask/core.py in _execute_task()
119 # temporaries by their reference count and can execute certain
120 # operations in-place.
--> 121 return func(*(_execute_task(a, cache) for a in args))
122 elif not ishashable(arg):
123 return arg
/opt/conda/lib/python3.8/site-packages/dask/utils.py in apply()
33 def apply(func, args, kwargs=None):
34 if kwargs:
---> 35 return func(*args, **kwargs)
36 else:
37 return func(*args)
/opt/conda/lib/python3.8/site-packages/dask/dataframe/core.py in apply_and_enforce()
5474 return meta
5475 if is_dataframe_like(df):
-> 5476 check_matching_columns(meta, df)
5477 c = meta.columns
5478 else:
/opt/conda/lib/python3.8/site-packages/dask/dataframe/utils.py in check_matching_columns()
690 def check_matching_columns(meta, actual):
691 # Need nan_to_num otherwise nan comparison gives False
--> 692 if not np.array_equal(np.nan_to_num(meta.columns), np.nan_to_num(actual.columns)):
693 extra = methods.tolist(actual.columns.difference(meta.columns))
694 missing = methods.tolist(meta.columns.difference(actual.columns))
/opt/conda/lib/python3.8/site-packages/pandas/core/generic.py in __getattr__()
5268 or name in self._accessors
5269 ):
-> 5270 return object.__getattribute__(self, name)
5271 else:
5272 if self._info_axis._can_hold_identifiers_and_holds_name(name):
pandas/_libs/properties.pyx in pandas._libs.properties.AxisProperty.__get__()
/opt/conda/lib/python3.8/site-packages/pandas/core/generic.py in __getattr__()
5268 or name in self._accessors
5269 ):
-> 5270 return object.__getattribute__(self, name)
5271 else:
5272 if self._info_axis._can_hold_identifiers_and_holds_name(name):
AttributeError: 'DataFrame' object has no attribute '_data'
The version of Pandas in my docker file is 1.0.1, so I already try upgrading Pandas (to version 1.2.2), but it didn't work, what am I doing wrong?
My guess is that you have a version mismatch somewhere. What does client.get_versions(check=True) say?
I'm trying to understand how to plot figures with Cyrillic text in the legend.
It seems that axes display TeX characters but text in the legend is using the default font. Here is the code:
import numpy as np
import matplotlib
matplotlib.use("pgf")
import matplotlib.pyplot as plt
matplotlib.rcParams['text.usetex'] = True
%matplotlib inline
x = np.linspace(-np.pi, np.pi, 256)
y = []
for i in range(-100, 100):
y += [np.cos(x + i)]
plt.xlim(-10, 10)
plt.ylim(-2, 2)
plt.xticks([-10, 0, 10])
plt.yticks()
plt.plot(x, y[0], color = 'red', linewidth = 2.5, linestyle = '-', label = 'style1')
plt.plot(x, y[1], color = 'blue', linewidth = 3, linestyle = '-', label = 'style2')
plt.legend()
Changing the label of the first (the red) line to something in cyrillic:
plt.plot(x, y[0], color = 'red', linewidth = 2.5, linestyle = '-', label = 'стил1')
gives the following error:
Error in callback .post_execute at 0x00000202EDCA3AF8> (for post_execute):
---------------------------------------------------------------------------
CalledProcessError Traceback (most recent call last)
~\anaconda3\lib\site-packages\matplotlib\texmanager.py in _run_checked_subprocess(self, command, tex)
303 cwd=self.texcache,
--> 304 stderr=subprocess.STDOUT)
305 except FileNotFoundError as exc:
~\anaconda3\lib\subprocess.py in check_output(timeout, *popenargs, **kwargs)
410 return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
--> 411 **kwargs).stdout
412
~\anaconda3\lib\subprocess.py in run(input, capture_output, timeout, check, *popenargs, **kwargs)
511 raise CalledProcessError(retcode, process.args,
--> 512 output=stdout, stderr=stderr)
513 return CompletedProcess(process.args, retcode, stdout, stderr)
CalledProcessError: Command '['latex', '-interaction=nonstopmode', '--halt-on-error', 'C:\\Users\\Victor\\.matplotlib\\tex.cache\\b6f49bb15be8eba85bb671cfafccfb49.tex']' returned non-zero exit status 1.
The above exception was the direct cause of the following exception:
RuntimeError Traceback (most recent call last)
~\anaconda3\lib\site-packages\matplotlib\pyplot.py in post_execute()
107 def post_execute():
108 if matplotlib.is_interactive():
--> 109 draw_all()
110
111 # IPython >= 2
~\anaconda3\lib\site-packages\matplotlib\_pylab_helpers.py in draw_all(cls, force)
126 for f_mgr in cls.get_all_fig_managers():
127 if force or f_mgr.canvas.figure.stale:
--> 128 f_mgr.canvas.draw_idle()
129
130 atexit.register(Gcf.destroy_all)
~\anaconda3\lib\site-packages\matplotlib\backend_bases.py in draw_idle(self, *args, **kwargs)
1914 if not self._is_idle_drawing:
1915 with self._idle_draw_cntx():
-> 1916 self.draw(*args, **kwargs)
1917
1918 def draw_cursor(self, event):
~\anaconda3\lib\site-packages\matplotlib\backends\backend_agg.py in draw(self)
386 self.renderer = self.get_renderer(cleared=True)
387 with RendererAgg.lock:
--> 388 self.figure.draw(self.renderer)
389 # A GUI class may be need to update a window using this draw, so
390 # don't forget to call the superclass.
~\anaconda3\lib\site-packages\matplotlib\artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
36 renderer.start_filter()
37
---> 38 return draw(artist, renderer, *args, **kwargs)
39 finally:
40 if artist.get_agg_filter() is not None:
~\anaconda3\lib\site-packages\matplotlib\figure.py in draw(self, renderer)
1707 self.patch.draw(renderer)
1708 mimage._draw_list_compositing_images(
-> 1709 renderer, self, artists, self.suppressComposite)
1710
1711 renderer.close_group('figure')
~\anaconda3\lib\site-packages\matplotlib\image.py in _draw_list_compositing_images(renderer, parent, artists, suppress_composite)
133 if not_composite or not has_images:
134 for a in artists:
--> 135 a.draw(renderer)
136 else:
137 # Composite any adjacent images together
~\anaconda3\lib\site-packages\matplotlib\artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
36 renderer.start_filter()
37
---> 38 return draw(artist, renderer, *args, **kwargs)
39 finally:
40 if artist.get_agg_filter() is not None:
~\anaconda3\lib\site-packages\matplotlib\axes\_base.py in draw(self, renderer, inframe)
2645 renderer.stop_rasterizing()
2646
-> 2647 mimage._draw_list_compositing_images(renderer, self, artists)
2648
2649 renderer.close_group('axes')
~\anaconda3\lib\site-packages\matplotlib\image.py in _draw_list_compositing_images(renderer, parent, artists, suppress_composite)
133 if not_composite or not has_images:
134 for a in artists:
--> 135 a.draw(renderer)
136 else:
137 # Composite any adjacent images together
~\anaconda3\lib\site-packages\matplotlib\artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
36 renderer.start_filter()
37
---> 38 return draw(artist, renderer, *args, **kwargs)
39 finally:
40 if artist.get_agg_filter() is not None:
~\anaconda3\lib\site-packages\matplotlib\legend.py in draw(self, renderer)
656 # update the location and size of the legend. This needs to
657 # be done in any case to clip the figure right.
--> 658 bbox = self._legend_box.get_window_extent(renderer)
659 self.legendPatch.set_bounds(bbox.x0, bbox.y0,
660 bbox.width, bbox.height)
...
~\anaconda3\lib\site-packages\matplotlib\offsetbox.py in get_extent_offsets(self, renderer)
491
492 whd_list = [c.get_extent(renderer)
--> 493 for c in self.get_visible_children()]
494
495 if not whd_list:
~\anaconda3\lib\site-packages\matplotlib\offsetbox.py in <listcomp>(.0)
491
492 whd_list = [c.get_extent(renderer)
--> 493 for c in self.get_visible_children()]
494
495 if not whd_list:
~\anaconda3\lib\site-packages\matplotlib\offsetbox.py in get_extent(self, renderer)
284 def get_extent(self, renderer):
285 """Return a tuple ``width, height, xdescent, ydescent`` of the box."""
--> 286 w, h, xd, yd, offsets = self.get_extent_offsets(renderer)
287 return w, h, xd, yd
288
~\anaconda3\lib\site-packages\matplotlib\offsetbox.py in get_extent_offsets(self, renderer)
417
418 whd_list = [c.get_extent(renderer)
--> 419 for c in self.get_visible_children()]
420 whd_list = [(w, h, xd, (h - yd)) for w, h, xd, yd in whd_list]
421
~\anaconda3\lib\site-packages\matplotlib\offsetbox.py in <listcomp>(.0)
417
418 whd_list = [c.get_extent(renderer)
--> 419 for c in self.get_visible_children()]
420 whd_list = [(w, h, xd, (h - yd)) for w, h, xd, yd in whd_list]
421
~\anaconda3\lib\site-packages\matplotlib\offsetbox.py in get_extent(self, renderer)
284 def get_extent(self, renderer):
285 """Return a tuple ``width, height, xdescent, ydescent`` of the box."""
--> 286 w, h, xd, yd, offsets = self.get_extent_offsets(renderer)
287 return w, h, xd, yd
288
~\anaconda3\lib\site-packages\matplotlib\offsetbox.py in get_extent_offsets(self, renderer)
491
492 whd_list = [c.get_extent(renderer)
--> 493 for c in self.get_visible_children()]
494
495 if not whd_list:
~\anaconda3\lib\site-packages\matplotlib\offsetbox.py in <listcomp>(.0)
491
492 whd_list = [c.get_extent(renderer)
--> 493 for c in self.get_visible_children()]
494
495 if not whd_list:
~\anaconda3\lib\site-packages\matplotlib\offsetbox.py in get_extent(self, renderer)
875 "lp", self._text._fontproperties, ismath=False)
876
--> 877 bbox, info, d = self._text._get_layout(renderer)
878 w, h = bbox.width, bbox.height
879
~\anaconda3\lib\site-packages\matplotlib\text.py in _get_layout(self, renderer)
296 if clean_line:
297 w, h, d = renderer.get_text_width_height_descent(
--> 298 clean_line, self._fontproperties, ismath=ismath)
299 else:
300 w = h = d = 0
~\anaconda3\lib\site-packages\matplotlib\backends\backend_agg.py in get_text_width_height_descent(self, s, prop, ismath)
199 fontsize = prop.get_size_in_points()
200 w, h, d = texmanager.get_text_width_height_descent(
--> 201 s, fontsize, renderer=self)
202 return w, h, d
203
~\anaconda3\lib\site-packages\matplotlib\texmanager.py in get_text_width_height_descent(self, tex, fontsize, renderer)
446 else:
447 # use dviread. It sometimes returns a wrong descent.
--> 448 dvifile = self.make_dvi(tex, fontsize)
449 with dviread.Dvi(dvifile, 72 * dpi_fraction) as dvi:
450 page, = dvi
~\anaconda3\lib\site-packages\matplotlib\texmanager.py in make_dvi(self, tex, fontsize)
336 self._run_checked_subprocess(
337 ["latex", "-interaction=nonstopmode", "--halt-on-error",
--> 338 texfile], tex)
339 for fname in glob.glob(basefile + '*'):
340 if not fname.endswith(('dvi', 'tex')):
~\anaconda3\lib\site-packages\matplotlib\texmanager.py in _run_checked_subprocess(self, command, tex)
315 prog=command[0],
316 tex=tex.encode('unicode_escape'),
--> 317 exc=exc.output.decode('utf-8'))) from exc
318 _log.debug(report)
319 return report
RuntimeError: latex was not able to process the following string:
b'\\u0441\\u0442\\u0438\\u043b1'
Here is the full report generated by latex:
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/W32TeX) (preloaded format=latex)
restricted \write18 enabled.
entering extended mode
(c:/Users/Victor/.matplotlib/tex.cache/b6f49bb15be8eba85bb671cfafccfb49.tex
LaTeX2e <2020-02-02> patch level 5
L3 programming layer <2020-02-25>
(c:/texlive/2019/texmf-dist/tex/latex/base/article.cls
Document Class: article 2019/12/20 v1.4l Standard LaTeX document class
(c:/texlive/2019/texmf-dist/tex/latex/base/size10.clo))
(c:/texlive/2019/texmf-dist/tex/latex/type1cm/type1cm.sty)
(c:/texlive/2019/texmf-dist/tex/latex/base/textcomp.sty)
(c:/texlive/2019/texmf-dist/tex/latex/base/inputenc.sty)
(c:/texlive/2019/texmf-dist/tex/latex/geometry/geometry.sty
(c:/texlive/2019/texmf-dist/tex/latex/graphics/keyval.sty)
(c:/texlive/2019/texmf-dist/tex/generic/iftex/ifvtex.sty
(c:/texlive/2019/texmf-dist/tex/generic/iftex/iftex.sty))
Package geometry Warning: Over-specification in `h'-direction.
`width' (5058.9pt) is ignored.
Package geometry Warning: Over-specification in `v'-direction.
`height' (5058.9pt) is ignored.
) (c:/texlive/2019/texmf-dist/tex/latex/l3backend/l3backend-dvips.def)
(./b6f49bb15be8eba85bb671cfafccfb49.aux)
*geometry* driver: auto-detecting
*geometry* detected driver: dvips
! Package inputenc Error: Unicode character с (U+0441)
(inputenc) not set up for use with LaTeX.
See the inputenc package documentation for explanation.
Type H <return> for immediate help.
...
l.14 \fontsize{10.000000}{12.500000}{\sffamily с
тил1}
No pages of output.
Transcript written on b6f49bb15be8eba85bb671cfafccfb49.log.
---------------------------------------------------------------------------
CalledProcessError Traceback (most recent call last)
~\anaconda3\lib\site-packages\matplotlib\texmanager.py in _run_checked_subprocess(self, command, tex)
303 cwd=self.texcache,
--> 304 stderr=subprocess.STDOUT)
305 except FileNotFoundError as exc:
~\anaconda3\lib\subprocess.py in check_output(timeout, *popenargs, **kwargs)
410 return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
--> 411 **kwargs).stdout
412
~\anaconda3\lib\subprocess.py in run(input, capture_output, timeout, check, *popenargs, **kwargs)
511 raise CalledProcessError(retcode, process.args,
--> 512 output=stdout, stderr=stderr)
513 return CompletedProcess(process.args, retcode, stdout, stderr)
CalledProcessError: Command '['latex', '-interaction=nonstopmode', '--halt-on-error', 'C:\\Users\\Victor\\.matplotlib\\tex.cache\\b6f49bb15be8eba85bb671cfafccfb49.tex']' returned non-zero exit status 1.
The above exception was the direct cause of the following exception:
RuntimeError Traceback (most recent call last)
~\anaconda3\lib\site-packages\IPython\core\formatters.py in __call__(self, obj)
339 pass
340 else:
--> 341 return printer(obj)
342 # Finally look for special method names
343 method = get_real_method(obj, self.print_method)
~\anaconda3\lib\site-packages\IPython\core\pylabtools.py in <lambda>(fig)
246
247 if 'png' in formats:
--> 248 png_formatter.for_type(Figure, lambda fig: print_figure(fig, 'png', **kwargs))
249 if 'retina' in formats or 'png2x' in formats:
250 png_formatter.for_type(Figure, lambda fig: retina_figure(fig, **kwargs))
~\anaconda3\lib\site-packages\IPython\core\pylabtools.py in print_figure(fig, fmt, bbox_inches, **kwargs)
130 FigureCanvasBase(fig)
131
--> 132 fig.canvas.print_figure(bytes_io, **kw)
133 data = bytes_io.getvalue()
134 if fmt == 'svg':
~\anaconda3\lib\site-packages\matplotlib\backend_bases.py in print_figure(self, filename, dpi, facecolor, edgecolor, orientation, format, bbox_inches, **kwargs)
2063 orientation=orientation,
2064 dryrun=True,
-> 2065 **kwargs)
2066 renderer = self.figure._cachedRenderer
2067 bbox_artists = kwargs.pop("bbox_extra_artists", None)
~\anaconda3\lib\site-packages\matplotlib\backends\backend_agg.py in print_png(self, filename_or_obj, metadata, pil_kwargs, *args, **kwargs)
525
526 else:
--> 527 FigureCanvasAgg.draw(self)
528 renderer = self.get_renderer()
529 with cbook._setattr_cm(renderer, dpi=self.figure.dpi), \
~\anaconda3\lib\site-packages\matplotlib\backends\backend_agg.py in draw(self)
386 self.renderer = self.get_renderer(cleared=True)
387 with RendererAgg.lock:
--> 388 self.figure.draw(self.renderer)
389 # A GUI class may be need to update a window using this draw, so
390 # don't forget to call the superclass.
~\anaconda3\lib\site-packages\matplotlib\artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
36 renderer.start_filter()
37
---> 38 return draw(artist, renderer, *args, **kwargs)
39 finally:
40 if artist.get_agg_filter() is not None:
~\anaconda3\lib\site-packages\matplotlib\figure.py in draw(self, renderer)
1707 self.patch.draw(renderer)
1708 mimage._draw_list_compositing_images(
-> 1709 renderer, self, artists, self.suppressComposite)
1710
1711 renderer.close_group('figure')
~\anaconda3\lib\site-packages\matplotlib\image.py in _draw_list_compositing_images(renderer, parent, artists, suppress_composite)
133 if not_composite or not has_images:
134 for a in artists:
--> 135 a.draw(renderer)
136 else:
137 # Composite any adjacent images together
~\anaconda3\lib\site-packages\matplotlib\artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
36 renderer.start_filter()
37
---> 38 return draw(artist, renderer, *args, **kwargs)
39 finally:
40 if artist.get_agg_filter() is not None:
~\anaconda3\lib\site-packages\matplotlib\axes\_base.py in draw(self, renderer, inframe)
2645 renderer.stop_rasterizing()
2646
-> 2647 mimage._draw_list_compositing_images(renderer, self, artists)
2648
2649 renderer.close_group('axes')
~\anaconda3\lib\site-packages\matplotlib\image.py in _draw_list_compositing_images(renderer, parent, artists, suppress_composite)
133 if not_composite or not has_images:
134 for a in artists:
--> 135 a.draw(renderer)
136 else:
137 # Composite any adjacent images together
~\anaconda3\lib\site-packages\matplotlib\artist.py in draw_wrapper(artist, renderer, *args, **kwargs)
36 renderer.start_filter()
37
---> 38 return draw(artist, renderer, *args, **kwargs)
39 finally:
40 if artist.get_agg_filter() is not None:
~\anaconda3\lib\site-packages\matplotlib\legend.py in draw(self, renderer)
656 # update the location and size of the legend. This needs to
657 # be done in any case to clip the figure right.
--> 658 bbox = self._legend_box.get_window_extent(renderer)
659 self.legendPatch.set_bounds(bbox.x0, bbox.y0,
660 bbox.width, bbox.height)
~\anaconda3\lib\site-packages\matplotlib\offsetbox.py in get_window_extent(self, renderer)
289 def get_window_extent(self, renderer):
290 """Return the bounding box (`.Bbox`) in display space."""
--> 291 w, h, xd, yd, offsets = self.get_extent_offsets(renderer)
292 px, py = self.get_offset(w, h, xd, yd, renderer)
293 return mtransforms.Bbox.from_bounds(px - xd, py - yd, w, h)
~\anaconda3\lib\site-packages\matplotlib\offsetbox.py in get_extent_offsets(self, renderer)
417
418 whd_list = [c.get_extent(renderer)
--> 419 for c in self.get_visible_children()]
420 whd_list = [(w, h, xd, (h - yd)) for w, h, xd, yd in whd_list]
421
~\anaconda3\lib\site-packages\matplotlib\offsetbox.py in <listcomp>(.0)
417
418 whd_list = [c.get_extent(renderer)
--> 419 for c in self.get_visible_children()]
420 whd_list = [(w, h, xd, (h - yd)) for w, h, xd, yd in whd_list]
421
~\anaconda3\lib\site-packages\matplotlib\offsetbox.py in get_extent(self, renderer)
284 def get_extent(self, renderer):
285 """Return a tuple ``width, height, xdescent, ydescent`` of the box."""
--> 286 w, h, xd, yd, offsets = self.get_extent_offsets(renderer)
287 return w, h, xd, yd
288
~\anaconda3\lib\site-packages\matplotlib\offsetbox.py in get_extent_offsets(self, renderer)
491
492 whd_list = [c.get_extent(renderer)
--> 493 for c in self.get_visible_children()]
494
495 if not whd_list:
~\anaconda3\lib\site-packages\matplotlib\offsetbox.py in <listcomp>(.0)
491
492 whd_list = [c.get_extent(renderer)
--> 493 for c in self.get_visible_children()]
494
495 if not whd_list:
~\anaconda3\lib\site-packages\matplotlib\offsetbox.py in get_extent(self, renderer)
284 def get_extent(self, renderer):
285 """Return a tuple ``width, height, xdescent, ydescent`` of the box."""
--> 286 w, h, xd, yd, offsets = self.get_extent_offsets(renderer)
287 return w, h, xd, yd
288
~\anaconda3\lib\site-packages\matplotlib\offsetbox.py in get_extent_offsets(self, renderer)
417
418 whd_list = [c.get_extent(renderer)
--> 419 for c in self.get_visible_children()]
420 whd_list = [(w, h, xd, (h - yd)) for w, h, xd, yd in whd_list]
421
~\anaconda3\lib\site-packages\matplotlib\offsetbox.py in <listcomp>(.0)
417
418 whd_list = [c.get_extent(renderer)
--> 419 for c in self.get_visible_children()]
420 whd_list = [(w, h, xd, (h - yd)) for w, h, xd, yd in whd_list]
421
~\anaconda3\lib\site-packages\matplotlib\offsetbox.py in get_extent(self, renderer)
284 def get_extent(self, renderer):
285 """Return a tuple ``width, height, xdescent, ydescent`` of the box."""
--> 286 w, h, xd, yd, offsets = self.get_extent_offsets(renderer)
287 return w, h, xd, yd
288
~\anaconda3\lib\site-packages\matplotlib\offsetbox.py in get_extent_offsets(self, renderer)
491
492 whd_list = [c.get_extent(renderer)
--> 493 for c in self.get_visible_children()]
494
495 if not whd_list:
~\anaconda3\lib\site-packages\matplotlib\offsetbox.py in <listcomp>(.0)
491
492 whd_list = [c.get_extent(renderer)
--> 493 for c in self.get_visible_children()]
494
495 if not whd_list:
~\anaconda3\lib\site-packages\matplotlib\offsetbox.py in get_extent(self, renderer)
875 "lp", self._text._fontproperties, ismath=False)
876
--> 877 bbox, info, d = self._text._get_layout(renderer)
878 w, h = bbox.width, bbox.height
879
~\anaconda3\lib\site-packages\matplotlib\text.py in _get_layout(self, renderer)
296 if clean_line:
297 w, h, d = renderer.get_text_width_height_descent(
--> 298 clean_line, self._fontproperties, ismath=ismath)
299 else:
300 w = h = d = 0
~\anaconda3\lib\site-packages\matplotlib\backends\backend_agg.py in get_text_width_height_descent(self, s, prop, ismath)
199 fontsize = prop.get_size_in_points()
200 w, h, d = texmanager.get_text_width_height_descent(
--> 201 s, fontsize, renderer=self)
202 return w, h, d
203
~\anaconda3\lib\site-packages\matplotlib\texmanager.py in get_text_width_height_descent(self, tex, fontsize, renderer)
446 else:
447 # use dviread. It sometimes returns a wrong descent.
--> 448 dvifile = self.make_dvi(tex, fontsize)
449 with dviread.Dvi(dvifile, 72 * dpi_fraction) as dvi:
450 page, = dvi
~\anaconda3\lib\site-packages\matplotlib\texmanager.py in make_dvi(self, tex, fontsize)
336 self._run_checked_subprocess(
337 ["latex", "-interaction=nonstopmode", "--halt-on-error",
--> 338 texfile], tex)
339 for fname in glob.glob(basefile + '*'):
340 if not fname.endswith(('dvi', 'tex')):
~\anaconda3\lib\site-packages\matplotlib\texmanager.py in _run_checked_subprocess(self, command, tex)
315 prog=command[0],
316 tex=tex.encode('unicode_escape'),
--> 317 exc=exc.output.decode('utf-8'))) from exc
318 _log.debug(report)
319 return report
RuntimeError: latex was not able to process the following string:
b'\\u0441\\u0442\\u0438\\u043b1'
Here is the full report generated by latex:
This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/W32TeX) (preloaded format=latex)
restricted \write18 enabled.
entering extended mode
(c:/Users/Victor/.matplotlib/tex.cache/b6f49bb15be8eba85bb671cfafccfb49.tex
LaTeX2e <2020-02-02> patch level 5
L3 programming layer <2020-02-25>
(c:/texlive/2019/texmf-dist/tex/latex/base/article.cls
Document Class: article 2019/12/20 v1.4l Standard LaTeX document class
(c:/texlive/2019/texmf-dist/tex/latex/base/size10.clo))
(c:/texlive/2019/texmf-dist/tex/latex/type1cm/type1cm.sty)
(c:/texlive/2019/texmf-dist/tex/latex/base/textcomp.sty)
(c:/texlive/2019/texmf-dist/tex/latex/base/inputenc.sty)
(c:/texlive/2019/texmf-dist/tex/latex/geometry/geometry.sty
(c:/texlive/2019/texmf-dist/tex/latex/graphics/keyval.sty)
(c:/texlive/2019/texmf-dist/tex/generic/iftex/ifvtex.sty
(c:/texlive/2019/texmf-dist/tex/generic/iftex/iftex.sty))
Package geometry Warning: Over-specification in `h'-direction.
`width' (5058.9pt) is ignored.
Package geometry Warning: Over-specification in `v'-direction.
`height' (5058.9pt) is ignored.
) (c:/texlive/2019/texmf-dist/tex/latex/l3backend/l3backend-dvips.def)
(./b6f49bb15be8eba85bb671cfafccfb49.aux)
*geometry* driver: auto-detecting
*geometry* detected driver: dvips
! Package inputenc Error: Unicode character с (U+0441)
(inputenc) not set up for use with LaTeX.
See the inputenc package documentation for explanation.
Type H <return> for immediate help.
...
l.14 \fontsize{10.000000}{12.500000}{\sffamily с
тил1}
No pages of output.
Transcript written on b6f49bb15be8eba85bb671cfafccfb49.log.
Solving this is important for me because I plan to redo a whole project, written using R (a book) in Python.
You need to tell tex that you would like to display some Russian.
# coding: utf-8
import numpy as np
import matplotlib.pyplot as plt
from matplotlib import rc
rc('text', usetex=True)
rc('text.latex',unicode=True)
rc('text.latex',preamble=r'\usepackage[utf8]{inputenc}')
rc('text.latex',preamble=r'\usepackage[russian]{babel}')
x = np.linspace(-np.pi, np.pi, 256)
y = []
for i in range(-100, 100):
y += [np.cos(x + i)]
plt.xlim(-10, 10)
plt.ylim(-2, 2)
plt.xticks([-10, 0, 10])
plt.yticks()
plt.plot(x, y[0], color = 'red', linewidth = 2.5, linestyle = '-', label = 'стил1')
plt.plot(x, y[1], color = 'blue', linewidth = 3, linestyle = '-', label = 'style2')
plt.legend()
plt.show()
I am trying to implement a InceptionV3 to classify the images.
(python 3.65 / tensorflow 1.14.0)
when I run the code, I am getting these key error : "logtostderr".
I don't know why this Key error happens.
How can I solve this problem?
Last week, I ran this code smoothly.
but, the problem was happened yesterday suddenly.
with tf.train.MonitoredSession(session_creator=session_creator) as sess:
for filenames, images in load_images(FLAGS.input_dir, batch_shape):
labels = sess.run(predicted_labels, feed_dict={x_input: images})
for filename, label in zip(filenames, labels):
true_label = image_labels.merge(pd.DataFrame({"ImageId":[filename[:-4]]}), on="ImageId")["TrueLabel"][0]
predictions.append([filename[:-4], true_label, label])
KeyError Traceback (most recent call last)
<ipython-input-19-307b2daa19e5> in <module>
88
89
---> 90 with tf.train.MonitoredSession(session_creator=session_creator) as sess:
91 for filenames, images in load_images(FLAGS.input_dir, batch_shape):
92 labels = sess.run(predicted_labels, feed_dict={x_input: images})
C:\ProgramData\Anaconda3\lib\site-packages\tensorflow\python\training\monitored_session.py in __init__(self, session_creator, hooks, stop_grace_period_secs)
1005 hooks,
1006 should_recover=True,
-> 1007 stop_grace_period_secs=stop_grace_period_secs)
1008
1009
C:\ProgramData\Anaconda3\lib\site-packages\tensorflow\python\training\monitored_session.py in __init__(self, session_creator, hooks, should_recover, stop_grace_period_secs)
723 stop_grace_period_secs=stop_grace_period_secs)
724 if should_recover:
--> 725 self._sess = _RecoverableSession(self._coordinated_creator)
726 else:
727 self._sess = self._coordinated_creator.create_session()
C:\ProgramData\Anaconda3\lib\site-packages\tensorflow\python\training\monitored_session.py in __init__(self, sess_creator)
1198 """
1199 self._sess_creator = sess_creator
-> 1200 _WrappedSession.__init__(self, self._create_session())
1201
1202 def _create_session(self):
C:\ProgramData\Anaconda3\lib\site-packages\tensorflow\python\training\monitored_session.py in _create_session(self)
1203 while True:
1204 try:
-> 1205 return self._sess_creator.create_session()
1206 except _PREEMPTION_ERRORS as e:
1207 logging.info(
C:\ProgramData\Anaconda3\lib\site-packages\tensorflow\python\training\monitored_session.py in create_session(self)
869 """Creates a coordinated session."""
870 # Keep the tf_sess for unit testing.
--> 871 self.tf_sess = self._session_creator.create_session()
872 # We don't want coordinator to suppress any exception.
873 self.coord = coordinator.Coordinator(clean_stop_exception_types=[])
C:\ProgramData\Anaconda3\lib\site-packages\tensorflow\python\training\monitored_session.py in create_session(self)
636
637 def create_session(self):
--> 638 self._scaffold.finalize()
639 return self._get_session_manager().prepare_session(
640 self._master,
C:\ProgramData\Anaconda3\lib\site-packages\tensorflow\python\training\monitored_session.py in finalize(self)
238
239 ops.get_default_graph().finalize()
--> 240 logging.info('Graph was finalized.')
241 return self
242
C:\ProgramData\Anaconda3\lib\site-packages\tensorflow\python\platform\tf_logging.py in info(msg, *args, **kwargs)
154 #tf_export(v1=['logging.info'])
155 def info(msg, *args, **kwargs):
--> 156 get_logger().info(msg, *args, **kwargs)
157
158
C:\ProgramData\Anaconda3\lib\logging\__init__.py in info(self, msg, *args, **kwargs)
1306 """
1307 if self.isEnabledFor(INFO):
-> 1308 self._log(INFO, msg, args, **kwargs)
1309
1310 def warning(self, msg, *args, **kwargs):
C:\ProgramData\Anaconda3\lib\logging\__init__.py in _log(self, level, msg, args, exc_info, extra, stack_info)
1442 record = self.makeRecord(self.name, level, fn, lno, msg, args,
1443 exc_info, func, extra, sinfo)
-> 1444 self.handle(record)
1445
1446 def handle(self, record):
C:\ProgramData\Anaconda3\lib\logging\__init__.py in handle(self, record)
1452 """
1453 if (not self.disabled) and self.filter(record):
-> 1454 self.callHandlers(record)
1455
1456 def addHandler(self, hdlr):
C:\ProgramData\Anaconda3\lib\logging\__init__.py in callHandlers(self, record)
1514 found = found + 1
1515 if record.levelno >= hdlr.level:
-> 1516 hdlr.handle(record)
1517 if not c.propagate:
1518 c = None #break out
C:\ProgramData\Anaconda3\lib\site-packages\absl\logging\__init__.py in handle(self, record)
889 rv = self.filter(record)
890 if rv:
--> 891 return self._current_handler.handle(record)
892 return rv
893
C:\ProgramData\Anaconda3\lib\logging\__init__.py in handle(self, record)
863 self.acquire()
864 try:
--> 865 self.emit(record)
866 finally:
867 self.release()
C:\ProgramData\Anaconda3\lib\site-packages\absl\logging\__init__.py in emit(self, record)
824 _warn_preinit_stderr = False
825 self._log_to_stderr(record)
--> 826 elif FLAGS['logtostderr'].value:
827 self._log_to_stderr(record)
828 else:
C:\ProgramData\Anaconda3\lib\site-packages\absl\flags\_flagvalues.py in __getitem__(self, name)
461 def __getitem__(self, name):
462 """Returns the Flag object for the flag --name."""
--> 463 return self._flags()[name]
464
465 def _hide_flag(self, name):
KeyError: 'logtostderr'
The following starter code errors out (AttributeError: incompatible shape for a non-contiguous array) when I try to use networkx on OSX 10.8.2, in an IPython notebook.
import networkx as nx
g = nx.Graph()
g.add_node(1)
g.add_node(2)
g.add_edge(1,2) # no error if this line is omitted
nx.draw(g)
I do not see the error if I do not add the edge to this graph. Matplotlib, Numpy, and Scipy were all installed as suggested here.
Below is the error message:
AttributeError Traceback (most recent call last)
<ipython-input-33-df7dfeff6452> in <module>()
----> 1 nx.draw(g)
/usr/local/lib/python2.7/site-packages/networkx/drawing/nx_pylab.pyc in draw(G, pos, ax, hold, **kwds)
131 pylab.hold(h)
132 try:
--> 133 draw_networkx(G,pos=pos,ax=ax,**kwds)
134 ax.set_axis_off()
135 pylab.draw_if_interactive()
/usr/local/lib/python2.7/site-packages/networkx/drawing/nx_pylab.pyc in draw_networkx(G, pos, with_labels, **kwds)
265
266 node_collection=draw_networkx_nodes(G, pos, **kwds)
--> 267 edge_collection=draw_networkx_edges(G, pos, **kwds)
268 if with_labels:
269 draw_networkx_labels(G, pos, **kwds)
/usr/local/lib/python2.7/site-packages/networkx/drawing/nx_pylab.pyc in draw_networkx_edges(G, pos, edgelist, width, edge_color, style, alpha, edge_cmap, edge_vmin, edge_vmax, ax, arrows, label, **kwds)
544 edge_collection.set_zorder(1) # edges go behind nodes
545 edge_collection.set_label(label)
--> 546 ax.add_collection(edge_collection)
547
548 # Note: there was a bug in mpl regarding the handling of alpha values for
/usr/local/lib/python2.7/site-packages/matplotlib/axes.pyc in add_collection(self, collection, autolim)
1443 if autolim:
1444 if collection._paths and len(collection._paths):
-> 1445 self.update_datalim(collection.get_datalim(self.transData))
1446
1447 collection._remove_method = lambda h: self.collections.remove(h)
/usr/local/lib/python2.7/site-packages/matplotlib/collections.pyc in get_datalim(self, transData)
165 offsets = offsets.filled(np.nan)
166 # get_path_collection_extents handles nan but not masked arrays
--> 167 offsets.shape = (-1, 2) # Make it Nx2
168
169 result = mpath.get_path_collection_extents(
AttributeError: incompatible shape for a non-contiguous array
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
/usr/local/lib/python2.7/site-packages/IPython/zmq/pylab/backend_inline.pyc in show(close)
100 try:
101 for figure_manager in Gcf.get_all_fig_managers():
--> 102 send_figure(figure_manager.canvas.figure)
103 finally:
104 show._to_draw = []
/usr/local/lib/python2.7/site-packages/IPython/zmq/pylab/backend_inline.pyc in send_figure(fig)
209 """
210 fmt = InlineBackend.instance().figure_format
--> 211 data = print_figure(fig, fmt)
212 # print_figure will return None if there's nothing to draw:
213 if data is None:
/usr/local/lib/python2.7/site-packages/IPython/core/pylabtools.pyc in print_figure(fig, fmt)
102 try:
103 bytes_io = BytesIO()
--> 104 fig.canvas.print_figure(bytes_io, format=fmt, bbox_inches='tight')
105 data = bytes_io.getvalue()
106 finally:
/usr/local/lib/python2.7/site-packages/matplotlib/backend_bases.pyc in print_figure(self, filename, dpi, facecolor, edgecolor, orientation, format, **kwargs)
1981 orientation=orientation,
1982 dryrun=True,
-> 1983 **kwargs)
1984 renderer = self.figure._cachedRenderer
1985 bbox_inches = self.figure.get_tightbbox(renderer)
/usr/local/lib/python2.7/site-packages/matplotlib/backends/backend_agg.pyc in print_png(self, filename_or_obj, *args, **kwargs)
467
468 def print_png(self, filename_or_obj, *args, **kwargs):
--> 469 FigureCanvasAgg.draw(self)
470 renderer = self.get_renderer()
471 original_dpi = renderer.dpi
/usr/local/lib/python2.7/site-packages/matplotlib/backends/backend_agg.pyc in draw(self)
419
420 try:
--> 421 self.figure.draw(self.renderer)
422 finally:
423 RendererAgg.lock.release()
/usr/local/lib/python2.7/site-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
53 def draw_wrapper(artist, renderer, *args, **kwargs):
54 before(artist, renderer)
---> 55 draw(artist, renderer, *args, **kwargs)
56 after(artist, renderer)
57
/usr/local/lib/python2.7/site-packages/matplotlib/figure.pyc in draw(self, renderer)
896 dsu.sort(key=itemgetter(0))
897 for zorder, a, func, args in dsu:
--> 898 func(*args)
899
900 renderer.close_group('figure')
/usr/local/lib/python2.7/site-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
53 def draw_wrapper(artist, renderer, *args, **kwargs):
54 before(artist, renderer)
---> 55 draw(artist, renderer, *args, **kwargs)
56 after(artist, renderer)
57
/usr/local/lib/python2.7/site-packages/matplotlib/axes.pyc in draw(self, renderer, inframe)
1995
1996 for zorder, a in dsu:
-> 1997 a.draw(renderer)
1998
1999 renderer.close_group('axes')
/usr/local/lib/python2.7/site-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
53 def draw_wrapper(artist, renderer, *args, **kwargs):
54 before(artist, renderer)
---> 55 draw(artist, renderer, *args, **kwargs)
56 after(artist, renderer)
57
/usr/local/lib/python2.7/site-packages/matplotlib/collections.pyc in draw(self, renderer)
227 self.update_scalarmappable()
228
--> 229 transform, transOffset, offsets, paths = self._prepare_points()
230
231 gc = renderer.new_gc()
/usr/local/lib/python2.7/site-packages/matplotlib/collections.pyc in _prepare_points(self)
203
204 offsets = np.asanyarray(offsets, np.float_)
--> 205 offsets.shape = (-1, 2) # Make it Nx2
206
207 if not transform.is_affine:
AttributeError: incompatible shape for a non-contiguous array
This was reported earlier in Draw a graph with edges using Networkx. It likely is a bug/feature in the NumPy library development version as mentioned above (numpy issue 2700).