When calculating MI between two words using a big document of about 3000 words, when I calculate the probability of the first word which is not repeated very much in the document, it is very low and the same for the second word; this low value affects the joint probability = p(x) * P(y) leading leads to a value of zero or NaN for the mutual information. How can I avoid this?
Your best bet is probably to use negative log probabilities- that will help you avoid underflow. Remember, p(x) * p(y) is the same as -log(p(x)) + -log(p(y)). For more information, consult your friendly neighborhood Wikipedia.
Related
Consider a problem whose solution maximizes an objective function.
Problem : From 500 elements, 15 needs to be selected (candidate solution), Value of Objective function depends on the pairwise relationships between the elements in a candidate solution and some more.
The steps for solving such a problem is described here:
1. Generate a set of candidate solutions in guided random manner(population) //not purely random the direction is given to generate the population
2. Evaluating the objective function for current population
3. If the current_best_solution exceeds the global_best_solution, then replace the global_best with current_best
4. Repeat steps 1,2,3 for N (arbitrary number) times
where size of population and N are smaller (approx 50)
After N iterations it returns a candidate solution stored in global_best_solution
Is this the description of a well-known algorithm?
If it is, what is the name of that algorithm or if not under which category these type of algorithms fit?
What you have sounds like you are just fishing. Note that you might as well get rid of steps 3 and 4 since running the loop 100 times would be the same as doing it once with an initial population 100 times as large.
If you think of the objective function as a random variable which is a function of random decision variables then what you are doing would e.g. give you something in the 99.9th percentile with very high probability -- but there is no limit to how far the optimum might be from the 99.9th percentile.
To illustrate the difficulty, consider the following sort of Travelling Salesman Problem. Imagine two clusters of points A and B, each of which has 100 points. Within the clusters, each point is arbitrarily close to every other point (e.g. 0.0000001). But -- between the clusters the distance is say 1,000,000. The optimal tour would clearly have length 2,000,000 (+ a negligible amount). A random tour is just a random permutation of those 200 decision points. Getting an optimal or near optimal tour would be akin to shuffling a deck of 200 cards with 100 read and 100 black and having all of the red cards in the deck in a block (counting blocks that "wrap around") -- vanishingly unlikely (It can be calculated as 99 * 100! * 100! / 200! = 1.09 x 10^-57). Even if you generate quadrillions of tours it is overwhelmingly likely that each of those tours would be off by millions. This is a min problem, but it is also easy to come up with max problems where it is vanishingly unlikely that you will get a near-optimal solution by purely random settings of the decision variables.
This is an extreme example, but it is enough to show that purely random fishing for a solution isn't very reliable. It would make more sense to use evolutionary algorithms or other heuristics such as simulated annealing or tabu search.
why do you work with a population if the members of that population do not interact ?
what you have there is random search.
if you add mutation it looks like an Evolution Strategy: https://en.wikipedia.org/wiki/Evolution_strategy
does every algorithm have Big Omega?
Is it possible for algorithms to have both Big O and Big Omega (but not equal to each other- not Big Theta) ?
For instance Quicksort's Big O - O(n log n) But does it have Big Omega? If it does, how do i calculate it?
First, it is of paramount importance that one not confuse the bound with the case. A bound - like Big-Oh, Big-Omega, Big-Theta, etc. - says something about a rate of growth. A case says something about the kinds of input you're currently considering being processed by your algorithm.
Let's consider a very simple example to illustrate the distinction above. Consider the canonical "linear search" algorithm:
LinearSearch(list[1...n], target)
1. for i := 1 to n do
2. if list[i] = target then return i
3. return -1
There are three broad kinds of cases one might consider: best, worst, and average cases for inputs of size n. In the best case, what you're looking for is the first element in the list (really, within any fixed number of the start of the list). In such cases, it will take no more than some constant amount of time to find the element and return from the function. Therefore, the Big-Oh and Big-Omega happen to be the same for the best case: O(1) and Omega(1). When both O and Omega apply, we also say Theta, so this is Theta(1) as well.
In the worst case, the element is not in the list, and the algorithm must go through all n entries. Since f(n) = n happens to be a function that is bound from above and from below by the same class of functions (linear ones), this is Theta(n).
Average case analysis is usually a bit trickier. We need to define a probability space for viable inputs of length n. One might say that all valid inputs (where integers can be represented using 32 bits in unsigned mode, for instance) are equally probable. From that, one could work out the average performance of the algorithm as follows:
Find the probability that target is not represented in the list. Multiply by n.
Given that target is in the list at least once, find the probability that it appears at position k for each 1 <= k <= n. Multiply each P(k) by k.
Add up all of the above to get a function in terms of n.
Notice that in step 1 above, if the probability is non-zero, we will definitely get at least a linear function (exercise: we can never get more than a linear function). However, if the probability in step 1 is indeed zero, then the assignment of probabilities in step 2 makes all the difference in determining the complexity: you can have best-case behavior for some assignments, worst-case for others, and possibly end up with behavior that isn't the same as best (constant) or worst (linear).
Sometimes, we might speak loosely of a "general" or "universal" case, which considers all kinds of input (not just the best or the worst), but that doesn't give any particular weighting to inputs and doesn't take averages. In other words, you consider the performance of the algorithm in terms of an upper-bound on the worst-case, and a lower-bound on the best-case. This seems to be what you're doing.
Phew. Now, back to your question.
Are there functions which have different O and Omega bounds? Definitely. Consider the following function:
f(n) = 1 if n is odd, n if n is even.
The best case is "n is odd", in which case f is Theta(1); the worst case is "n is even", in which case f is Theta(n); and if we assume for the average case that we're talking about 32-bit unsigned integers, then f is Theta(n) in the average case, as well. However, if we talk about the "universal" case, then f is O(n) and Omega(1), and not Theta of anything. An algorithm whose runtime behaves according to f might be the following:
Strange(list[1...n], target)
1. if n is odd then return target
2. else return LinearSearch(list, target)
Now, a more interesting question might be whether there are algorithms for which some case (besides the "universal" case) cannot be assigned some valid Theta bound. This is interesting, but not overly so. The reason is that you, during your analysis, are allowed to choose the cases that constitutes best- and worst-case behavior. If your first choice for the case turns out not to have a Theta bound, you can simply exclude the inputs that are "abnormal" for your purposes. The case and the bound aren't completely independent, in that sense: you can often choose a case such that it has "good" bounds.
But can you always do it?
I don't know, but that's an interesting question.
Does every algorithm have a Big Omega?
Yes. Big Omega is a lower bound. Any algorithm can be said to take at least constant time, so any algorithm is Ω(1).
Does every algorithm have a Big O?
No. Big O is a upper bound. Algorithms that don't (reliably) terminate don't have a Big O.
An algorithm has an upper bound if we can say that, in the absolute worst case, the algorithm will not take longer than this. I'm pretty sure O(∞) is not valid notation.
When will the Big O and Big Omega of an algorithm be equal?
There is actually a special notation for when they can be equal: Big Theta (Θ).
They will be equal if the algorithm scales perfectly with the size of the input (meaning there aren't input sizes where the algorithm is suddenly a lot more efficient).
This is assuming we take Big O to be the smallest possible upper bound and Big Omega to be the largest possible lower bound. This is not actually required from the definition, but they're commonly informally treated as such. If you drop this assumption, you can find a Big O and Big Omega that aren't equal for any algorithm.
Brute force prime number checking (where we just loop through all smaller numbers and try to divide them into the target number) is perhaps a good example of when the smallest upper bound and largest lower bound are not equal.
Assume you have some number n. Let's also for the time being ignore the fact that bigger numbers take longer to divide (a similar argument holds when we take this into account, although the actual complexities would be different). And I'm also calculating the complexity based on the number itself instead of the size of the number (which can be the number of bits, and could change the analysis here quite a bit).
If n is divisible by 2 (or some other small prime), we can very quickly check whether it's prime with 1 division (or a constant number of divisions). So the largest lower bound would be Ω(1).
Now if n is prime, we'll need to try to divide n by each of the numbers up to sqrt(n) (I'll leave the reason we don't need to go higher than this as an exercise). This would take O(sqrt(n)), which would also then be our smallest upper bound.
So the algorithm would be Ω(1) and O(sqrt(n)).
Exact complexity also may be hard to calculate for some particularly complex algorithms. In such cases it may be much easier and acceptable to simply calculate some reasonably close lower and upper bounds and leave it at that. I don't however have an example on hand for this.
How does this relate to best case and worst case?
Do not confuse upper and lower bounds for best and worst case. This is a common mistake, and a bit confusing, but they're not the same. This is a whole other topic, but as a brief explanation:
The best and worst (and average) cases can be calculated for every single input size. The upper and lower bounds can then be used for each of those 3 cases (separately). You can think of each of those cases as a line on a graph with input size on the x-axis and time on the y-axis and then, for each of those lines, the upper and lower bounds are lines which need to be strictly above or below that line as the input size tends to infinity (this isn't 100% accurate, but it's a good basic idea).
Quick-sort has a worst-case of Θ(n2) (when we pick the worst possible pivot at every step) and a best-case of Θ(n log n) (when we pick good pivots). Note the use of Big Theta, meaning each of those are both lower and upper bounds.
Let's compare quick-sort with the above prime checking algorithm:
Say you have a given number n, and n is 53. Since it's prime, it will (always) take around sqrt(53) steps to determine whether it's prime. So the best and worst cases are all the same.
Say you want to sort some array of size n, and n is 53. Now those 53 elements can be arranged such that quick-sort ends up picking really bad pivots and run in around 532 steps (the worst case) or really good pivots and run in around 53 log 53 steps (the best case). So the best and worst cases are different.
Now take n as 54 for each of the above:
For prime checking, it will only take around 1 step to determine that 54 is prime. The best and worst cases are the same again, but they're different from what they were for 53.
For quick-sort, you'll again have a worst case of around 542 steps and a best case of around 54 log 54 steps.
So for quick-sort the worst case always takes around n2 steps and the best case always takes around n log n steps. So the lower and upper (or "tight") bound of the worst case is Θ(n2) and the tight bound of the best case is Θ(n log n).
For our prime checking, sometimes the worst case takes around sqrt(n) steps and sometimes it takes around 1 step. So the lower bound for the worse case would be Ω(1) and upper bound would be O(sqrt(n)). It would be the same for the best case.
Note that above I simply said "the algorithm would be Ω(1) and O(sqrt(n))". This is slightly ambiguous, as it's not clear whether the algorithm always takes the same amount of time for some input size, or the statement is referring to one of the best, average or worst case.
How do I calculate this?
It's hard to give general advice for this since proofs of bounds are greatly dependent on the algorithm. You'd need to analyse the algorithm similar to what I did above to figure out the worst and best cases.
Big O and Big Omega it can be calculated for every algorithm as you can see in Big-oh vs big-theta
I have a set of vertices with some profit defined between each pair of vertices such that profit(i,j) may not be equal to profit(j,i). Moreover there exist positive weight cycles and the profit may be negative.
This is a NP-hard problem to find the maximum profit, so the problem is to maximize the profit visiting each city at most one( all cities need not to be visited).
I have tried following algorithms to find this:
Greedy algorithm on complete set of vertices.
Greedy with brute force: First find the greedy sequence of vertices. This gives the approximate sets of vertices which nearly form clusters. Now take consecutive set of say 8 cities and rearrange them to find maximum profit using brute force.
But these do not give very good results when tried on 100 vertices.
Are there any other probabilistic or approximate methods to maximize the cost?
Im not sure i understand the question but Can't you sort the edges and thn find the minimum spanning tree. Something how kruskals algo works?
EDIT
If there exist negative weight edges, you can stop the moment the weight becomes negative.
Greetings. I'm trying to approximate the function
Log10[x^k0 + k1], where .21 < k0 < 21, 0 < k1 < ~2000, and x is integer < 2^14.
k0 & k1 are constant. For practical purposes, you can assume k0 = 2.12, k1 = 2660. The desired accuracy is 5*10^-4 relative error.
This function is virtually identical to Log[x], except near 0, where it differs a lot.
I already have came up with a SIMD implementation that is ~1.15x faster than a simple lookup table, but would like to improve it if possible, which I think is very hard due to lack of efficient instructions.
My SIMD implementation uses 16bit fixed point arithmetic to evaluate a 3rd degree polynomial (I use least squares fit). The polynomial uses different coefficients for different input ranges. There are 8 ranges, and range i spans (64)2^i to (64)2^(i + 1).
The rational behind this is the derivatives of Log[x] drop rapidly with x, meaning a polynomial will fit it more accurately since polynomials are an exact fit for functions that have a derivative of 0 beyond a certain order.
SIMD table lookups are done very efficiently with a single _mm_shuffle_epi8(). I use SSE's float to int conversion to get the exponent and significand used for the fixed point approximation. I also software pipelined the loop to get ~1.25x speedup, so further code optimizations are probably unlikely.
What I'm asking is if there's a more efficient approximation at a higher level?
For example:
Can this function be decomposed into functions with a limited domain like
log2((2^x) * significand) = x + log2(significand)
hence eliminating the need to deal with different ranges (table lookups). The main problem I think is adding the k1 term kills all those nice log properties that we know and love, making it not possible. Or is it?
Iterative method? don't think so because the Newton method for log[x] is already a complicated expression
Exploiting locality of neighboring pixels? - if the range of the 8 inputs fall in the same approximation range, then I can look up a single coefficient, instead of looking up separate coefficients for each element. Thus, I can use this as a fast common case, and use a slower, general code path when it isn't. But for my data, the range needs to be ~2000 before this property hold 70% of the time, which doesn't seem to make this method competitive.
Please, give me some opinion, especially if you're an applied mathematician, even if you say it can't be done. Thanks.
You should be able to improve on least-squares fitting by using Chebyshev approximation. (The idea is, you're looking for the approximation whose worst-case deviation in a range is least; least-squares instead looks for the one whose summed squared difference is least.) I would guess this doesn't make a huge difference for your problem, but I'm not sure -- hopefully it could reduce the number of ranges you need to split into, somewhat.
If there's already a fast implementation of log(x), maybe compute P(x) * log(x) where P(x) is a polynomial chosen by Chebyshev approximation. (Instead of trying to do the whole function as a polynomial approx -- to need less range-reduction.)
I'm an amateur here -- just dipping my toe in as there aren't a lot of answers already.
One observation:
You can find an expression for how large x needs to be as a function of k0 and k1, such that the term x^k0 dominates k1 enough for the approximation:
x^k0 +k1 ~= x^k0, allowing you to approximately evaluate the function as
k0*Log(x).
This would take care of all x's above some value.
I recently read how the sRGB model compresses physical tri stimulus values into stored RGB values.
It basically is very similar to the function I try to approximate, except that it's defined piece wise:
k0 x, x < 0.0031308
k1 x^0.417 - k2 otherwise
I was told the constant addition in Log[x^k0 + k1] was to make the beginning of the function more linear. But that can easily be achieved with a piece wise approximation. That would make the approximation a lot more "uniform" - with only 2 approximation ranges. This should be cheaper to compute due to no longer needing to compute an approximation range index (integer log) and doing SIMD coefficient lookup.
For now, I conclude this will be the best approach, even though it doesn't approximate the function precisely. The hard part will be proposing this change and convincing people to use it.
I searched the site but did not find exactly what I was looking for... I wanted to generate a discrete random number from normal distribution.
For example, if I have a range from a minimum of 4 and a maximum of 10 and an average of 7. What code or function call ( Objective C preferred ) would I need to return a number in that range. Naturally, due to normal distribution more numbers returned would center round the average of 7.
As a second example, can the bell curve/distribution be skewed toward one end of the other? Lets say I need to generate a random number with a range of minimum of 4 and maximum of 10, and I want the majority of the numbers returned to center around the number 8 with a natural fall of based on a skewed bell curve.
Any help is greatly appreciated....
Anthony
What do you need this for? Can you do it the craps player's way?
Generate two random integers in the range of 2 to 5 (inclusive, of course) and add them together. Or flip a coin (0,1) six times and add 4 to the result.
Summing multiple dice produces a normal distribution (a "bell curve"), while eliminating high or low throws can be used to skew the distribution in various ways.
The key is you are going for discrete numbers (and I hope you mean integers by that). Multiple dice throws famously generate a normal distribution. In fact, I think that's how we were first introduced to the Gaussian curve in school.
Of course the more throws, the more closely you approximate the bell curve. Rolling a single die gives a flat line. Rolling two dice just creates a ramp up and down that isn't terribly close to a bell. Six coin flips gets you closer.
So consider this...
If I understand your question correctly, you only have seven possible outcomes--the integers (4,5,6,7,8,9,10). You can set up an array of seven probabilities to approximate any distribution you like.
Many frameworks and libraries have this built-in.
Also, just like TokenMacGuy said a normal distribution isn't characterized by the interval it's defined on, but rather by two parameters: Mean μ and standard deviation σ. With both these parameters you can confine a certain quantile of the distribution to a certain interval, so that 95 % of all points fall in that interval. But resticting it completely to any interval other than (−∞, ∞) is impossible.
There are several methods to generate normal-distributed values from uniform random values (which is what most random or pseudorandom number generators are generating:
The Box-Muller transform is probably the easiest although not exactly fast to compute. Depending on the number of numbers you need, it should be sufficient, though and definitely very easy to write.
Another option is Marsaglia's Polar method which is usually faster1.
A third method is the Ziggurat algorithm which is considerably faster to compute but much more complex to program. In applications that really use a lot of random numbers it may be the best choice, though.
As a general advice, though: Don't write it yourself if you have access to a library that generates normal-distributed random numbers for you already.
For skewing your distribution I'd just use a regular normal distribution, choosing μ and σ appropriately for one side of your curve and then determine on which side of your wanted mean a point fell, stretching it appropriately to fit your desired distribution.
For generating only integers I'd suggest you just round towards the nearest integer when the random number happens to fall within your desired interval and reject it if it doesn't (drawing a new random number then). This way you won't artificially skew the distribution (such as you would if you were clamping the values at 4 or 10, respectively).
1 In testing with deliberately bad random number generators (yes, worse than RANDU) I've noticed that the polar method results in an endless loop, rejecting every sample. Won't happen with random numbers that fulfill the usual statistic expectations to them, though.
Yes, there are sophisticated mathematical solutions, but for "simple but practical" I'd go with Nosredna's comment. For a simple Java solution:
Random random=new Random();
public int bell7()
{
int n=4;
for (int x=0;x<6;++x)
n+=random.nextInt(2);
return n;
}
If you're not a Java person, Random.nextInt(n) returns a random integer between 0 and n-1. I think the rest should be similar to what you'd see in any programming language.
If the range was large, then instead of nextInt(2)'s I'd use a bigger number in there so there would be fewer iterations through the loop, depending on frequency of call and performance requirements.
Dan Dyer and Jay are exactly right. What you really want is a binomial distribution, not a normal distribution. The shape of a binomial distribution looks a lot like a normal distribution, but it is discrete and bounded whereas a normal distribution is continuous and unbounded.
Jay's code generates a binomial distribution with 6 trials and a 50% probability of success on each trial. If you want to "skew" your distribution, simply change the line that decides whether to add 1 to n so that the probability is something other than 50%.
The normal distribution is not described by its endpoints. Normally it's described by it's mean (which you have given to be 7) and its standard deviation. An important feature of this is that it is possible to get a value far outside the expected range from this distribution, although that will be vanishingly rare, the further you get from the mean.
The usual means for getting a value from a distribution is to generate a random value from a uniform distribution, which is quite easily done with, for example, rand(), and then use that as an argument to a cumulative distribution function, which maps probabilities to upper bounds. For the standard distribution, this function is
F(x) = 0.5 - 0.5*erf( (x-μ)/(σ * sqrt(2.0)))
where erf() is the error function which may be described by a taylor series:
erf(z) = 2.0/sqrt(2.0) * Σ∞n=0 ((-1)nz2n + 1)/(n!(2n + 1))
I'll leave it as an excercise to translate this into C.
If you prefer not to engage in the exercise, you might consider using the Gnu Scientific Library, which among many other features, has a technique to generate random numbers in one of many common distributions, of which the Gaussian Distribution (hint) is one.
Obviously, all of these functions return floating point values. You will have to use some rounding strategy to convert to a discrete value. A useful (but naive) approach is to simply downcast to integer.