- Using openrdf-sesame-latest
- Using in-memory repository in Sesame Standalone Server
- Using REST api interface (SPARQL queries) to Sesame Standalone server
- Have few hundred thousands triples for now
- have 16GB of memory on Sesame Server
- Moderate writes and reads
I am just looking for opinions/help here from the experts
I started this as a POC and build my application on top of it. I am looking at 4Stores and Mulgara, Alleograph (free) options.
Given my less experience, I was wondering when would it be absolutley
mandatory for me to move away from Sesame Server.
Would it be scale, security, write/read peformance etc?
If I only have, lets say, 100,000 triples, do I ever need to move to some other store and why?
I intend to use it for production use-case as well.
Its just that I am trying avoid invest time in migrating unless its absolutely needed. Let me put it another way "Can I use openrdf-sesame-latest Standalone server with in-memory repository (16GB) in production? If not, why not?
Being one of the Sesame developers, I'm obviously biased, but I don't see why you couldn't.
Sesame is successfully used in many production environments. The memory store scales with the amount of available RAM, and although I have personally never tested it with more than a couple of million triples, I expect you can continue addding without significant performance loss as long as you don't run out of heap space. You mention 100,000 triples, which is tiny, Sesame can easily cope with orders of magnitude larger datasets.
An advantage of Sesame is also that it is really not a single triplestore, but a framework and API that supports multiple storage backends. For anything up to, say, 150 million triples, the Sesame native store is a good solution (better persistence, less memory footprint, which are perhaps good reasons to use this even if the amount of data you have would fit in memory).
If you need to go beyond that, there are several other options, including third-party triplestores such as OWLIM or BigData, that support the Sesame APIs - so even if you find you need a bigger triplestore you won't have to change much at code level - you simply plug in a different store.
Related
I am currently working on a website where, roughly 40 million documents and images should be served to it's users. I need suggestions on which method is the most suitable for storing content with subject to these requirements.
System should be highly available, scale-able and durable.
Files have to be stored permanently and users should be able to modify them.
Due to client restrictions, 3rd party object storage providers such as Amazon S3 and CDNs are not suitable.
File size of content can vary from 1 MB to 30 MB. (However about 90% of the files would be less than 2 MB)
Content retrieval latency is not much of a problem. Therefore indexing or caching is not very important.
I did some research and found out about the following solutions;
Storing content as BLOBs in databases.
Using GridFS to chunk and store content.
Storing content in a file server in directories using a hash and storing the metadata in a database.
Using a distributed file system such as GlusterFS or HDFS and storing the file metadata in a database.
The website is developed using PHP and Couchbase Community Edition is used as the database.
I would really appreciate any input.
Thank you.
I have been working on a similar system for last two years, the work is still in progress. However, requirements are slightly different from yours: modifications are not possible (I will try to explain why later), file sizes fall in range from several bytes to several megabytes, and, the most important one, the deduplication, which should be implemented both on the document and block levels. If two different users upload the same file to the storage, the only copy of the file should be kept. Also if two different files partially intersect with each other, it's necessary to store the only copy of the common part of these files.
But let's focus on your requirements, so deduplication is not the case. First of all, high availability implies replication. You'll have to store your file in several replicas (typically 2 or 3, but there are techniques to decrease data parity) on independent machines in order to stay alive in case if one of the storage servers in your backend dies. Also, taking into account the estimation of the data amount, it's clear that all your data just won't fit into a single server, so vertical scaling is not possible and you have to consider partitioning. Finally, you need to take into account concurrency control to avoid race conditions when two different clients are trying to write or update the same data simultaneously. This topic is close to the concept of transactions (I don't mean ACID literally, but something close). So, to summarize, these facts mean that you're are actually looking for distributed database designed to store BLOBs.
On of the biggest problems in distributed systems is difficulties with global state of the system. In brief, there are two approaches:
Choose leader that will communicate with other peers and maintain global state of the distributed system. This approach provides strong consistency and linearizability guarantees. The main disadvantage is that in this case leader becomes the single point of failure. If leader dies, either some observer must assign leader role to one of the replicas (common case for master-slave replication in RDBMS world), or remaining peers need to elect new one (algorithms like Paxos and Raft are designed to target this issue). Anyway, almost whole incoming system traffic goes through the leader. This leads to the "hot spots" in backend: the situation when CPU and IO costs are unevenly distributed across the system. By the way, Raft-based systems have very low write throughput (check etcd and consul limitations if you are interested).
Avoid global state at all. Weaken the guarantees to eventual consistency. Disable the update of files. If someone wants to edit the file, you need to save it as new file. Use the system which is organized as a peer-to-peer network. There is no peer in the cluster that keeps the full track of the system, so there is no single point of failure. This results in high write throughput and nice horizontal scalability.
So now let's discuss the options you've found:
Storing content as BLOBs in databases.
I don't think it's a good option to store files in traditional RDBMS because they provide optimizations for structured data and strong consistency, and you don't need neither of this. Also you'll have difficulties with backups and scaling. People usually don't use RDBMS in this way.
Using GridFS to chunk and store content.
I'm not sure, but it looks like GridFS is built on the top of MongoDB. Again, this is document-oriented database designed to store JSONs, not BLOBs. Also MongoDB had problems with a cluster for many years. MongoDB passed Jepsen tests only in 2017. This may mean that MongoDB cluster is not mature yet. Make performance and stress tests, if you go this way.
Storing content in a file server in directories using a hash and storing the metadata in a database.
This option means that you need to develop object storage on your own. Consider all the problems I've mentioned above.
Using a distributed file system such as GlusterFS or HDFS and storing the file metadata in a database.
I used neither of these solutions, but HDFS looks like overkill, because you get dependent on Hadoop stack. Have no idea about GlusterFS performance. Always consider the design of distributed file systems. If they have some kind of dedicated "metadata" serves, treat it as a single point of failure.
Finally, my thoughts on the solutions that may fit your needs:
Elliptics. This object storage is not well-known outside of the russian part of the Internet, but it's mature and stable, and performance is perfect. It was developed at Yandex (russian search engine) and a lot of Yandex services (like Disk, Mail, Music, Picture hosting and so on) are built on the top of it. I used it in previous project, this may take some time for your ops to get into it, but it's worth it, if you're OK with GPL license.
Ceph. This is real object storage. It's also open source, but it seems that only Red Hat people know how to deploy and maintain it. So get ready to a vendor lock. Also I heard that it have too complicated settings. Never used in production, so don't know about performance.
Minio. This is S3-compatible object storage, under active development at the moment. Never used it in production, but it seems to be well-designed.
You may also check wiki page with the full list of available solutions.
And the last point: I strongly recommend not to use OpenStack Swift (there are lot of reasons why, but first of all, Python is just not good for these purposes).
One probably-relevant question, whose answer I do not readily see in your post, is this:
How often do users actually "modify" the content?
and:
When and if they do, how painful is it if a particular user is served "stale" content?
Personally (and, "categorically speaking"), I prefer to tackle such problems in two stages: (1) identifying the objects to be stored – e.g. using a database as an index; and (2) actually storing them, this being a task that I wish to delegate to "a true file-system, which after all specializes in such things."
A database (it "offhand" seems to me ...) would be a very good way to handle the logical ("as seen by the user") taxonomy of the things which you wish to store, while a distributed filesystem could handle the physical realities of storing the data and actually getting it to where it needs to go, and your application would be in the perfect position to gloss-over all of those messy filesystem details . . .
I am trying to load several large biomedical ontologies into a GraphDB Owl Horst optimized repository, along with 10s of millions of triples using terms from those ontologies. I can load these data into a RDFS+ optimized repo in less than 1 hour, but I can't even load one of the ontologies (chebi_lite) if I let it go overnight. That's using loadrdf on a 64 core, 256 GB AWS server.
My earlier question Can GraphDB load 10 million statements with OWL reasoning? lead to the suggestion that I use the preload command, followed by re-inferring. The preload indeed went very quickly, but when it comes to re-inferring, only one core is used. I haven't been able to let it go for more than an hour yet. Is re-inferring using just one core a consequence of using the free version? Might loadrdf work better if I just did a better configuration?
When I use loadrdf, all cores go close to 100%, but the memory usage never goes over 10% or so. I have tinkered with the JVM memory settings a little, but I don't really know what I'm doing. For example
-Xmx80g -Dpool.buffer.size=2000000
So I've been trying hard to figure out if NoSQL is really bringing that much value outside of auto-sharding and handling UNSTRUCTURED data.
Assuming I can fit my STRUCTURED data on a single machine OR have an effective 'auto-sharding' feature for SQL, what advantages do any NoSQL options offer? I've determined the following:
Document-based (MongoDB, Couchbase, etc) - Outside of it's 'auto-sharding' capabilities, I'm having a hard time understanding where the benefit is. Linked objects are quite similar to SQL joins, while Embedded objects significantly bloat doc size and causes a challenge regarding to replication (a comment could belong to both a post AND a user, and therefore the data would be redundant). Also, loss of ACID and transactions are a big disadvantage.
Key-value based (Redis, Memcached, etc) - Serves a different use case, ideal for caching but not complex queries
Columnar (Cassandra, HBase, etc ) - Seems that the big advantage here is more how the data is stored on disk, and mostly useful for aggregations rather than general use
Graph (Neo4j, OrientDB, etc) - The most intriguing, the use of both edges and nodes makes for an interesting value-proposition, but mostly useful for highly complex relational data rather than general use.
I can see the advantages of Key-value, Columnar and Graph DBs for specific use cases (Caching, social network relationship mapping, aggregations), but can't see any reason to use something like MongoDB for STRUCTURED data outside of it's 'auto-sharding' capabilities.
If SQL has a similar 'auto-sharding' ability, would SQL be a no-brainer for structured data? Seems to me it would be, but I would like the communities opinion...
NOTE: This is in regards to a typical CRUD application like a Social Network, E-Commerce site, CMS etc.
If you're starting off on a single server, then many advantages of NoSQL go out the window. The biggest advantages to the most popular NoSQL are high availability with less down time. Eventual consistency requirements can lead to performance improvements as well. It really depends on your needs.
Document-based - If your data fits well into a handful of small buckets of data, then a document oriented database. For example, on a classifieds site we have Users, Accounts and Listings as the core data. The bulk of search and display operations are against the Listings alone. With the legacy database we have to do nearly 40 join operations to get the data for a single listing. With NoSQL it's a single query. With NoSQL we can also create indexes against nested data, again with results queried without Joins. In this case, we're actually mirroring data from SQL to MongoDB for purposes of search and display (there are other reasons), with a longer-term migration strategy being worked on now. ElasticSearch, RethinkDB and others are great databases as well. RethinkDB actually takes a very conservative approach to the data, and ElasticSearch's out of the box indexing is second to none.
Key-value store - Caching is an excellent use case here, when you are running a medium to high volume website where data is mostly read, a good caching strategy alone can get you 4-5 times the users handled by a single server. Key-value stores (RocksDB, LevelDB, Redis, etc) are also very good options for Graph data, as individual mapping can be held with subject-predicate-target values which can be very fast for graphing options over the top.
Columnar - Cassandra in particular can be used to distribute significant amounts of load for even single-value lookups. Cassandra's scaling is very linear to the number of servers in use. Great for heavy read and write scenarios. I find this less valuable for live searches, but very good when you have a VERY high load and need to distribute. It takes a lot more planning, and may well not fit your needs. You can tweak settings to suite your CAP needs, and even handle distribution to multiple data centers in the box. NOTE: Most applications do emphatically NOT need this level of use. ElasticSearch may be a better fit in most scenarios you would consider HBase/Hadoop or Cassandra for.
Graph - I'm not as familiar with graph databases, so can't comment here (beyond using a key-value store as underlying option).
Given that you then comment on MongoDB specifically vs SQL ... even if both auto-shard. PostgreSQL in particular has made a lot of strides in terms of getting unstrictured data usable (JSON/JSONB types) not to mention the power you can get from something like PLV8, it's probably the most suited to handling the types of loads you might throw at a document store with the advantages of NoSQL. Where it happens to fall down is that replication, sharding and failover are bolted on solutions not really in the box.
For small to medium loads sharding really isn't the best approach. Most scenarios are mostly read so having a replica-set where you have additional read nodes is usually better when you have 3-5 servers. MongoDB is great in this scenario, the master node is automagically elected, and failover is pretty fast. The only weirdness I've seen is when Azure went down in late 2014, and only one of the servers came up first, the other two were almost 40 minutes later. With replication any given read request can be handled in whole by a single server. Your data structures become simpler, and your chances of data loss are reduced.
Again in my own example above, for a mediums sized classifieds site, the vast majority of data belongs to a single collection... it is searched against, and displayed from that collection. With this use case a document store works much better than structured/normalized data. The way the objects are stored are much closer to their representation in the application. There's less of a cognitive disconnect and it simply works.
The fact is that SQL JOIN operations kill performance, especially when aggregating data across those joins. For a single query for a single user it's fine, even with a dozen of them. When you get to dozens of joins with thousands of simultaneous users, it starts to fall apart. At this point you have several choices...
Caching - caching is always a great approach, and the less often your data changes, the better the approach. This can be anything from a set of memcache/redis instances to using something like MongoDB, RethinkDB or ElasticSearch to hold composite records. The challenge here comes down to updating or invalidating your cached data.
Migrating - migrating your data to a data store that better represents your needs can be a good idea as well. If you need to handle massive writes, or very massive read scenarios no SQL database can keep up. You could NEVER handle the likes of Facebook or Twitter on SQL.
Something in between - As you need to scale it depends on what you are doing and where your pain points are as to what will be the best solution for a given situation. Many developers and administrators fear having data broken up into multiple places, but this is often the best answer. Does your analytical data really need to be in the same place as your core operational data? For that matter do your logins need to be tightly coupled? Are you doing a lot of correlated queries? It really depends.
Personal Opinions Ahead
For me, I like the safety net that SQL provides. Having it as the central store for core data it's my first choice. I tend to treat RDBMS's as dumb storage, I don't like being tied to a given platform. I feel that many people try to over-normalize their data. Often I will add an XML or JSON field to a table so additional pieces of data can be stored without bloating the scheme, specifically if it's unlikely to ever be queried... I'll then have properties in my objects in the application code that store in those fields. A good example may be a payment... if you are currently using one system, or multiple systems (one for CC along with Paypal, Google, Amazon etc) then the details of the transaction really don't affect your records, why create 5+ tables to store this detailed data. You can even use JSON for primary storage and have computed columns derived and persisted from that JSON for broader query capability and indexing where needed. Databases like postgresql and mysql (iirc) offer direct indexing against JSON data as well.
When data is a natural fit for a document store, I say go for it... if the vast majority of your queries are for something that fits better to a single record or collection, denormalize away. Having this as a mirror to your primary data is great.
For write-heavy data you want multiple systems in play... It depends heavily on your needs here... Do you need fast hot-query performance? Go with ElasticSearch. Do you need absolute massive horizontal scale, HBase or Cassandra.
The key take away here is not to be afraid to mix it up... there really isn't a one size fits all. As an aside, I feel that if PostgreSQL comes up with a good in the box (for the open-source version) solution for even just replication and automated fail-over they're in a much better position than most at that point.
I didn't really get into, but feel I should mention that there are a number of SaaS solutions and other providers that offer hybrid SQL systems. You can develop against MySQL/MariaDB locally and deploy to a system with SQL on top of a distributed storage cluster. I still feel that HBase or ElasticSearch are better for logging and analitical data, but the SQL on top solutions are also compelling.
More: http://www.mongodb.com/nosql-explained
Schema-less storage (or schema-free). Ability to modify the storage (basically add new fields to records) without having to modify the storage 'declared' schema. RDBMSs require the explicit declaration of said 'fields' and require explicit modifications to the schema before a new 'field' is saved. A schema-free storage engine allows for fast application changes, just modify the app code to save the extra fields, or rename the fields, or drop fields and be done.
Traditional RDBMS folk consider the schema-free a disadvantage because they argue that on the long run one needs to query the storage and handling the heterogeneous records (some have some fields, some have other fields) makes it difficult to handle. But for a start-up the schema-free is overwhelmingly alluring, as fast iteration and time-to-market is all that matter (and often rightly so).
You asked us to assume that either the data can fit on a single machine, OR your database has an effective auto-sharding feature.
Going with the assumption that your SQL data has an auto-sharding feature, that means you're talking about running a cluster. Any time you're running a cluster of machines you have to worry about fault-tolerance.
For example, let's say you're using the simplest approach of sharding your data by application function, and are storing all of your user account data on server A and your product catalog on server B.
Is it acceptable to your business if server A goes down and none of your users can login?
Is it acceptable to your business if server B goes down and no one can buy things?
If not, you need to worry about setting up data replication and high-availability failover. Doable, but not pleasant or easy for SQL databases. Other types of sharding strategies (key, lookup service, etc) have the same challenges.
Many NoSQL databases will automatically handle replication and failovers. Some will do it out of the box, with very little configuration. That's a huge benefit from an operational point of view.
Full disclosure: I'm an engineer at FoundationDB, a NoSQL database that automatically handles sharding, replication, and fail-over with very little configuration. It also has a SQL layer so you you don't have to give up structured data.
I'm beginning a new project using CakePHP. I like the "auto-magic" features, I think its a good fit for the project. I'm wondering about the potential to scale CakePHP to several million IP hits a day. and hundreds of thousands of database writes and reads a day. Also about 50,000 to 500,000 users, often with 3000 concurrently using the site. I'm making use of heavy stored procedures to offset this, and I'm accessing several servers including a load balancer.
I'm wondering about the computational time of some of the auto-magic and how well Cake is able to assist with session requests making many db hits. Has anyone has had success with cake running from a single server array setup with this level of traffic? I'm not using the cloud or a distributed database (yet). I'm really worried about potential bottlenecks with using this framework. I'm interested in advice from anyone who has worked with Cake in production. I've reseached, but I would love a second opinion. Thank you for your time.
This is not a problem but optimization is up to you.
There are different cache methods available you can implement, memcache, redis, full page caching... All of that is supported by cacke already. What you cache and where is up to you.
For searching you could try elastic search to speedup things
There are before dispatcher filters to by pass controller instantiation (you might want to do that in special cases, check the asset filter for example)
Use nginx not apache
Also I would not start with over optimizing and over-thinking this before any code is written, start well, think about caching but when you start to come across bottleneck analyse and fix them. Otherwise you'll waste a lot of time with over optimization before you even have written anything that works.
Cake itself is very fast. Just to proof the bullshit factor of these fancy benchmarks some frameworks do we did one using a dispatcher filter to "optimize" it and even beat Yii who seems to be pretty eager to show how fast it is, but benchmarks are pointless, specially in a huge project where so many human made fail can be introduced.
I have to rewrite a large database application, running on 32 servers. The hardware is up to date, each machine has two quad core Xeon and 32 GByte RAM.
The database is multi-tenant, each customer has his own file, around 5 to 10 GByte each. I run around 50 databases on this hardware. The app is open to the web, so I have no control
on the load. There are no really complex queries, so SQL is not required if there is a better solution.
The databases get updated via FTP every day at midnight. The database is read-only.
C# is my favourite language and I want to use ASP.NET MVC.
I thought about the following options:
Use two big SQL servers running SQL Server 2012 to serve the 32 servers with data. On the 32 servers running IIS hosting providing REST services.
Denormalize the database and use Redis on each webserver. Use booksleeve as a Redis client.
Use a combination of SQL Server and Redis
Use SQL Server 2012 together with Hadoop
Use Hadoop without SQL Server
What is the best way for a read-only database, to get the best performance without loosing maintainability? Does Map-Reduce make sense at all in such a scenario?
The reason for the rewrite is, the old app written in C++ with ISAM technology is too slow, the interfaces are old fashioned and not nice to use from an website, especially when using ajax.
The app uses a relational datamodel with many tables, but it is possible to write one accerlerator table where all queries can be performed on, and all other information from the other tables are possible by a simple key lookup.
Few questions. What problems have come up that you're rewriting this? What do the query patterns look like? It sounds like you would be most comfortable with a SQLServer + caching (memcached) to address whatever issues that are causing you to rewrite this. Redis is good, but you won't need the data structure features with the db handling queries, and you don't need persistance if it's only being used as a cache. Without knowing more about the problem, I guess I'd look at MongoDB to handle data sharding, redundant storage, and caching all in one solution. There are no special machines in this setup, redundancy can be configured, and the load should balance well.
This question is almost an opinion piece. I'd personally prefer an Oracle RAC with TimesTen for caching if performance is of the utmost importance, and if volume of concurrent reads is high during the day.
There's a white paper here...
http://www.oracle.com/us/products/middleware/timesten-in-memory-db-504865.pdf
The specs of the disk subsystem and organization of indexes and data files across physical disks is probably the most important factor though.