usage of $1 and $2 in awk - awk

As I know in awk, $1 and $2 refer to the first and second field of the file . But can $1 and $2 be used to refer the first and second field of a variable .. Such that if session=5 is stored in a variable. Then I would like to have $1 referring to 'session' and $2 to '5' . Thank you
Input File
session=123
process=90
customer=145
session=123
customer=198
process=90
CODE
awk '$1 ~ /^Session|^CustomerId/' hi|xargs -L 1 -I name '{if (!($1 SUBSEP $2 in a)) {ids[$1]++; a[$1, $2]}} END {for (id in ids) {print "Count of unique", id, " " ids[id]}}'
DETAILS
I will pass the output that I got from first and pipe it via xargs and I have the lines read in "name" variable in xargs .. Now my $1 should correspond to first field of xargs and this is my query
Output
Count of unique sessions=2
Count of unique customer=2

If you want to limit the script to only including "session" and "customer" all you have to do is add the regex to the main script as a selector:
awk -F= '$1 ~ /^(session|customer)$/ {if (!($1 SUBSEP $2 in a)) {ids[$1]++; a[$1, $2]}} END {for (id in ids) {print "Count of unique", id, " " ids[id]}}'

If what you're looking for is a count of unique customers and sessions, then this might do:
awk -F= '
$1~/^(session|customer)$/ && !seen[$0] {
seen[$0]=1;
count[$1]++;
}
END {
printf("Count of sessions: %d\n", count["session"]);
printf("Count of customers: %d\n", count["customer"]);
}' hi
In addition to keeping a count, this keeps an associative array of lines that have contributed a count, to avoid counting lines a second time - thus making it a unique count.

Use the Field Separator, which can be specified inside the BEGIN code block as FS="separator", or as a command line option to awk via -F "separator" This answer shows only the point asked by the question. it does not address the final output.
awk -F"=" '$1 == "session" ||
$1 == "customer" { ids[$1]++ } # do whatever you need with the counters.
END { for (id in ids) {
print "Count, id "=" ids[id] }}' hi

Why don't you just try an all awk solution? It's more simple:
awk -F "=" '$1 ~ /customer|session/ { name[$1]++ } END { for (var in name) print "Count of unique", var"="name[var] }' hi
Results:
Count of unique customer=2
Count of unique session=2
Is there some other reason you need to pipe to xargs?
HTH

Yet an alternative would be
awk -F "=" '$1 ~ /customer|session/ {print $1}'|sort |uniq -c | awk '{print "Count of unique "$2"="$1}'

Here is the answer to the question you deleted:
This is self-contained AWK script based on an answer of mine to one of your earlier questions:
#!/usr/bin/awk -f
/^Customer=/ {
mc[$0, prev]++
if (!($0 in cseen)) {
cust[++custc] = $0
ids["Customer"]++
}
cseen[$0]
}
/^Merchant=/ {
prev = $0
if (!($0 in mseen)) {
merch[++merchc] = $0
ids["Merchant"]++
}
mseen[$0]++
}
END {
for (id in ids) {
print "Count of unique", id, ids[id]
}
for (i = 1; i <= merchc; i++) {
merchant = merch[i]
print "Customers under (" merchant ") is " mseen[merchant]
for (j = 1; j <= custc; j++) {
customer = cust[j]
if (customer SUBSEP merchant in mc) {
print "(" customer ") under (" merchant ") is " mc[customer, merchant]
}
}
}
}
Set it be executable and run it:
$ chmod u+x customermerchant
$ ./customermerchant data.txt

Related

change field value of one file based on another input file using awk

I have a sparse matrix ("matrix.csv") with 10k rows and 4 columns (1st column is "user", and the rest columns are called "slots" and contain 0s or 1s), like this:
user1,0,1,0,0
user2,0,1,0,1
user3,1,0,0,0
Some of the slots that contain a "0" should be changed to contain a "1".
I have another file ("slots2change.csv") that tells me which slots should be changed, like this:
user1,3
user3,2
user3,4
So for user1, I need to change slot3 to contain a "1" instead of a "0", and for user3 I should change slot2 and slot4 to contain a "1" instead of a "0", and so on.
Expected result:
user1,0,1,1,0
user2,0,1,0,1
user3,1,1,0,1
How can I achieve this using awk or sed?
Looking at this post: awk or sed change field of file based on another input file, a user proposed an answer that is valid if the "slots2change.csv" file do not contain the same user in diferent rows, which is not the case in here.
The solution proposed was:
awk 'BEGIN{FS=OFS=","}
NR==FNR{arr[$1]=$2;next}
NR!=FNR {for (i in arr)
if ($1 == i) {
F=arr[i] + 1
$F=1
}
print
}
' slots2change.csv matrix.csv
But that answer doesn't apply in the case where the "slots2change.csv" file contain the same user in different rows, as is now the case.
Any ideas?
Using GNU awk for arrays of arrays:
$ cat tst.awk
BEGIN { FS=OFS="," }
NR == FNR {
users2slots[$1][$2]
next
}
$1 in users2slots {
for ( slot in users2slots[$1] ) {
$(slot+1) = 1
}
}
{ print }
$ awk -f tst.awk slots2change.csv matrix.csv
user1,0,1,1,0
user2,0,1,0,1
user3,1,1,0,1
or using any awk:
$ cat tst.awk
BEGIN { FS=OFS="," }
NR == FNR {
if ( !seen[$0]++ ) {
users2slots[$1] = ($1 in users2slots ? users2slots[$1] FS : "") $2
}
next
}
$1 in users2slots {
split(users2slots[$1],slots)
for ( idx in slots ) {
slot = slots[idx]
$(slot+1) = 1
}
}
{ print }
$ awk -f tst.awk slots2change.csv matrix.csv
user1,0,1,1,0
user2,0,1,0,1
user3,1,1,0,1
Using sed
while IFS="," read -r user slot; do
sed -Ei "/$user/{s/(([^,]*,){$slot})[^,]*/\11/}" matrix.csv
done < slots2change.csv
$ cat matrix.csv
user1,0,1,1,0
user2,0,1,0,1
user3,1,1,0,1
If the order in which the users are outputted doesn't matter then you could do something like this:
awk '
BEGIN { FS = OFS = "," }
FNR == NR {
fieldsCount[$1] = NF
for (i = 1; i <= NF; i++ )
matrix[$1,i] = $i
next
}
{ matrix[$1,$2+1] = 1 }
END {
for ( id in fieldsCount ) {
nf = fieldsCount[id]
for (i = 1; i <= nf; i++)
printf "%s%s", matrix[id,i], (i < nf ? OFS : ORS)
}
}
' matrix.csv slots2change.csv
user1,0,1,1,0
user2,0,1,0,1
user3,1,1,0,1
This might work for you (GNU sed):
sed -E 's#(.*),(.*)#/^\1/s/,[01]/,1/\2#' fileChanges | sed -f - fileCsv
Create a sed script from the file containing the changes and apply it to the intended file.
The solution above, manufactures a match and substitution for each line in the file changes. This is then piped through to second invocation of sed which applies the sed script to the csv file.

Printing multiple lines with the same "largest" value using awk

I have a file that looks like this:
3, abc, x
2, def, y
3, ghi, z
I want to find the highest value in $1 and print all rows that contain this highest value in $1.
sort -t, -k1,1n| tail -n1
would just give one of the rows that contain 3 in $1, but I need both.
Any suggestions are appreciated (:
I’m not sure if this is the nicest way to get lines while they have the same value with awk, but:
awk 'NR == 1 { t = $1; print } NR > 1 { if (t != $1) { exit; } print }'
which can be combined with sort as follows:
sort -t, -k1,1nr | awk 'NR == 1 { t = $1; print } NR > 1 { if (t != $1) { exit; } print }'
There’s also this, but it does unnecessary work:
sort -t, -k1,1nr | awk 'NR == 1 { t = $1 } t == $1 { print }'
Here is another approach that does not require sorting, but requires two passes over the data.
max=$(awk -F',' '{if(max < $1) max = $1}END{print max}' Input.txt )
awk -v max=$max -F',' '$1 == max' Input.txt
In awk, only one pass over the data:
$ awk -F, '
$1>m { # when new max is found
delete a; m=$1; i=0 # reset all
}
a[1]=="" || $1==m { # if $1 equals max or we're processing the first record
a[++i]=$0 # store the record to a
}
END { # in the end
for(j=1;j<=i;j++)
print a[j] # print a with stored records
}
' file
3, abc, x
3, ghi, z

extract info from a tag using awk

I have multi columns file and i want to extract some info in column 71.
I want to extract using tags which the value can be anything, for example i want to just extract AC=* ; AF=* , where the value can be anything .
I found similar question and gave it a try but it didn't work
Extract columns with values matching a specific pattern
Column 71 looks like this:
AC=14511;AC_AFR=382;AC_AMR=1177;AC_Adj=14343;AC_EAS=5;AC_FIN=427;AC_Het=11813;AC_Hom=1265;AC_NFE=11027;AC_OTH=97;AC_SAS=1228;AF=0.137;AN=106198;AN_AFR=8190;AN_AMR=10424;AN_Adj=99264;AN_EAS=7068;AN_FIN=6414;AN_NFE=51090;AN_OTH=658;AN_SAS=15420;BaseQRankSum=1.73;ClippingRankSum=-1.460e-01;DB;DP=1268322;FS=0.000;GQ_MEAN=190.24;GQ_STDDEV=319.67;Het_AFR=358;Het_AMR=1049;Het_EAS=5;Het_FIN=399;Het_NFE=8799;Het_OTH=83;Het_SAS=1120;Hom_AFR=12;Hom_AMR=64;Hom_EAS=0;Hom_FIN=14;Hom_NFE=1114;Hom_OTH=7;Hom_SAS=54;InbreedingCoeff=0.0478;MQ=60.00;MQ0=0;MQRankSum=0.037;NCC=270;POSITIVE_TRAIN_SITE;QD=21.41;ReadPosRankSum=0.212;VQSLOD=4.79;culprit=MQ;DP_HIST=30|3209|1539|1494|30007|7938|4130|2038|1310|612|334|185|97|60|31|25|9|11|7|33,0|66|339|1048|2096|2665|2626|1832|1210|584|323|179|89|54|31|22|7|9|4|15;GQ_HIST=84|66|56|82|3299|568|617|403|250|319|436|310|28566|2937|827|834|451|186|217|12591,15|15|13|16|25|11|22|28|18|38|52|31|65|76|39|83|93|65|97|12397;CSQ=T|ENSG00000186868|ENST00000334239|Transcript|intron_variant||||||rs754512|1||1|MAPT|HGNC|6893|protein_coding||CCDS11502.1|ENSP00000334886|TAU_HUMAN|B4DSE3_HUMAN|UPI0000000C16||||2/8||ENST00000334239.8:c.134-94A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000570299|Transcript|intron_variant&non_coding_transcript_variant||||||rs754512|1||1|MAPT|HGNC|6893|processed_transcript||||||||||2/6||ENST00000570299.1:n.262-94A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000340799|Transcript|intron_variant||||||rs754512|1||1|MAPT|HGNC|6893|protein_coding||CCDS45716.1|ENSP00000340438|TAU_HUMAN||UPI000004EEE6||||3/10||ENST00000340799.5:c.221-94A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000262410|Transcript|intron_variant||||||rs754512|1||1|MAPT|HGNC|6893|protein_coding||CCDS11501.1|ENSP00000262410|TAU_HUMAN||UPI0000EE80B7||||4/13||ENST00000262410.5:c.308-94A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000446361|Transcript|intron_variant||||||rs754512|1||1|MAPT|HGNC|6893|protein_coding||CCDS11500.1|ENSP00000408975|TAU_HUMAN||UPI000004EEE5||||2/9||ENST00000446361.3:c.134-94A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000574436|Transcript|intron_variant||||||rs754512|1||1|MAPT|HGNC|6893|protein_coding||CCDS11499.1|ENSP00000460965|TAU_HUMAN||UPI000002D754||||3/10||ENST00000574436.1:c.308-94A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000571987|Transcript|intron_variant||||||rs754512|1||1|MAPT|HGNC|6893|protein_coding||CCDS11501.1|ENSP00000458742|TAU_HUMAN||UPI0000EE80B7||||3/12||ENST00000571987.1:c.308-94A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000415613|Transcript|intron_variant||||||rs754512|1||1|MAPT|HGNC|6893|protein_coding||CCDS45715.1|ENSP00000410838|TAU_HUMAN||UPI0001AE66E9||||3/13||ENST00000415613.2:c.308-94A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000571311|Transcript|intron_variant&NMD_transcript_variant||||||rs754512|1||1|MAPT|HGNC|6893|nonsense_mediated_decay|||ENSP00000460048||I3L2Z2_HUMAN|UPI00025A2E6E||||4/4||ENST00000571311.1:c.*176-94A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000535772|Transcript|intron_variant||||||rs754512|1||1|MAPT|HGNC|6893|protein_coding||CCDS56033.1|ENSP00000443028|TAU_HUMAN|B4DSE3_HUMAN|UPI000004EEE4||||4/10||ENST00000535772.1:c.308-94A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000576518|Transcript|stop_gained|5499|7|3|K/*|Aag/Tag|rs754512|1||1|MAPT|HGNC|6893|protein_coding|||ENSP00000458621||I3L170_HUMAN&B4DSE3_HUMAN|UPI0001639A7C|||1/7|||ENST00000576518.1:c.7A>T|ENSP00000458621.1:p.Lys3Ter|T:0.1171|||||||||15792962|||||POSITION:0.00682261208576998&ANN_ORF:-255.6993&MAX_ORF:-255.6993|PHYLOCSF_WEAK|ANC_ALLELE|LC,T|ENSG00000186868|ENST00000420682|Transcript|intron_variant||||||rs754512|1||1|MAPT|HGNC|6893|protein_coding||CCDS45716.1|ENSP00000413056|TAU_HUMAN||UPI000004EEE6||||2/9||ENST00000420682.2:c.221-94A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000572440|Transcript|non_coding_transcript_exon_variant&non_coding_transcript_variant|2790|||||rs754512|1||1|MAPT|HGNC|6893|retained_intron|||||||||1/1|||ENST00000572440.1:n.2790A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000351559|Transcript|intron_variant||||||rs754512|1||1|MAPT|HGNC|6893|protein_coding||CCDS11499.1|ENSP00000303214|TAU_HUMAN||UPI000002D754||||4/11||ENST00000351559.5:c.308-94A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000344290|Transcript|intron_variant||||||rs754512|1||1|MAPT|HGNC|6893|protein_coding|YES|CCDS45715.1|ENSP00000340820|TAU_HUMAN||UPI0001AE66E9||||4/14||ENST00000344290.5:c.308-94A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000347967|Transcript|intron_variant||||||rs754512|1||1|MAPT|HGNC|6893|protein_coding|||ENSP00000302706|TAU_HUMAN|B4DSE3_HUMAN|UPI0000173D91||||4/10||ENST00000347967.5:c.32-100A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000431008|Transcript|intron_variant||||||rs754512|1||1|MAPT|HGNC|6893|protein_coding||CCDS56033.1|ENSP00000389250|TAU_HUMAN|B4DSE3_HUMAN|UPI000004EEE4||||3/9||ENST00000431008.3:c.308-94A>T||T:0.1171|||||||||15792962||||||||
The code that i tried:
awk '{
for (i = 1; i <= NF; i++) {
if ($i ~ /AC|AF/) {
printf "%s %s ", $i, $(i + 1)
}
}
print ""
}'
I keep getting syntax error.
output wanted :
AC=14511;AF=0.137
Whenever you have name=value pairs, it's usually simplest to first create an array that maps names to values (n2v[] below) and then you can just access the values by their names.
$ cat file
AC=1;AC_AFR=2;AF=3 AC=4;AC_AFR=5;AF=6
$ cat tst.awk
{
delete n2v
split($2,tmp,/[;=]/)
for (i=1; i in tmp; i+=2) {
n2v[tmp[i]] = tmp[i+1]
}
prt("AC")
prt("AF")
}
function prt(name) { print name, "=", n2v[name] }
$ awk -f tst.awk file
AC = 4
AF = 6
Just change $2 to $71 for your real input.
Something like this should do it (in Gnu awk due to switch):
$ awk '{split($71,a,";");for(i in a )if(a[i]~/^AF/) print a[i]}' foo
AF=0.137
You split the field $71 by ;s, loop thru the array you split to looking for desired match. For multiple matches use switch:
$ awk '{
split($0,a,";");
for(i in a )
switch(a[i]) {
case /^AF=/:
b=b a[i] OFS;
break;
case /^AC=/:
b=b a[i] OFS;
break
}
sub(/.$/,"\n",b);
printf b
}' foo
AC=14511 AF=0.137
EDIT: Now it buffers output to a variable and prints it in the end. You can control the separator with OFS.

awk totally separate duplicate and non-duplicates

If we have an input:
TargetIDs,CPD,Value,SMILES
95,CPD-1111111,-2,c1ccccc1
95,CPD-2222222,-3,c1ccccc1
95,CPD-2222222,-4,c1ccccc1
95,CPD-3333333,-1,c1ccccc1N
Now we would like to separate the duplicates and non-duplicates based on the fourth column (smiles)
duplicate:
95,CPD-1111111,-2,c1ccccc1
95,CPD-2222222,-3,c1ccccc1
95,CPD-2222222,-4,c1ccccc1
non-duplicate
95,CPD-3333333,-1,c1ccccc1N
Now the following attempt could do separate the duplicate without any problem. However, the first occurrence of the duplicate will still be included into the non-duplicate file.
BEGIN { FS = ","; f1="a"; f2="b"}
{
# Keep count of the fields in fourth column
count[$4]++;
# Save the line the first time we encounter a unique field
if (count[$4] == 1)
first[$4] = $0;
# If we encounter the field for the second time, print the
# previously saved line
if (count[$4] == 2)
print first[$4] > f1 ;
# From the second time onward. always print because the field is
# duplicated
if (count[$4] > 1)
print > f1;
if (count[$4] == 1) #if (count[$4] - count[$4] == 0) <= change to this doesn't work
print first[$4] > f2;
duplicate output results from the attempt:
95,CPD-1111111,-2,c1ccccc1
95,CPD-2222222,-3,c1ccccc1
95,CPD-2222222,-4,c1ccccc1
non-duplicate output results from the attempt
TargetIDs,CPD,Value,SMILES
95,CPD-3333333,-1,c1ccccc1N
95,CPD-1111111,-2,c1ccccc1
May I know if any guru might have comments/solutions? Thanks.
I would do this:
awk '
NR==FNR {count[$2] = $1; next}
FNR==1 {FS=","; next}
{
output = (count[$NF] == 1 ? "nondup" : "dup")
print > output
}
' <(cut -d, -f4 input | sort | uniq -c) input
The process substitution will pre-process the file and perform a count on the 4th column. Then, you can process the file and decide if that line is "duplicated".
All in awk: Ed Morton shows a way to collect the data in a single pass. Here's a 2 pass solution that's virtually identical to my example above
awk -F, '
NR==FNR {count[$NF]++; next}
FNR==1 {next}
{
output = (count[$NF] == 1 ? "nondup" : "dup")
print > output
}
' input input
Yes, the input file is given twice.
$ cat tst.awk
BEGIN{ FS="," }
NR>1 {
if (cnt[$4]++) {
dups[$4] = nonDups[$4] dups[$4] $0 ORS
delete nonDups[$4]
}
else {
nonDups[$4] = $0 ORS
}
}
END {
print "Duplicates:"
for (key in dups) {
printf "%s", dups[key]
}
print "\nNon Duplicates:"
for (key in nonDups) {
printf "%s", nonDups[key]
}
}
$ awk -f tst.awk file
Duplicates:
95,CPD-1111111,-2,c1ccccc1
95,CPD-2222222,-3,c1ccccc1
95,CPD-2222222,-4,c1ccccc1
Non Duplicates:
95,CPD-3333333,-1,c1ccccc1N
This solution only works if the duplicates are grouped together.
awk -F, '
function fout( f, i) {
f = (cnt > 1) ? "dups" : "nondups"
for (i = 1; i <= cnt; ++i)
print lines[i] > f
}
NR > 1 && $4 != lastkey { fout(); cnt = 0 }
{ lastkey = $4; lines[++cnt] = $0 }
END { fout() }
' file
Little late
My version in awk
awk -F, 'NR>1{a[$0":"$4];b[$4]++}
END{d="\n\nnondupe";e="dupe"
for(i in a){split(i,c,":");b[c[2]]==1?d=d"\n"i:e=e"\n"i} print e d}' file
Another built similar to glenn jackmans but all in awk
awk -F, 'function r(f) {while((getline <f)>0)a[$4]++;close(f)}
BEGIN{r(ARGV[1])}{output=(a[$4] == 1 ? "nondup" : "dup");print >output} ' file

missing field and extra space after using for loop in awk

I need to use an awk script to extract some information from a file.
I have a title line which has 11 field and I split it to an array called titleList.
Student Number:Name:Lab1:Lab2:Lab3:Lab4:Lab5:Lab6:Exam1:Exam2:Final
After finding a proper line I need to print the fields which proceeds by the titles for example if the result is :
92839342:Robert Bloomingdale:9:26:18:22:9:12:25:39:99
I must print it in this way:
Student Number:92839342 Name:Robert Bloomingdale Lab1:9 Lab2:26 Lab3:18
Lab4:22 Lab5:9 Lab6:12 Exam1:25 Exam2:39 Final:99
I use a for loop to manage it:
for (i=0 ;i<=NF ;i++)
{
printf "%s %s %s %s",titleList[i],":",$i," "
}
everything look good except the result which has 2 problems:
first there is an extra space between each result and second the last field of the searched line is missing
Student Number : 92839342 Name : Robert Bloomingdale Lab1 : 9 Lab2 : 26
Lab3:18 Lab4 : 22 Lab5 : 9 Lab6 : 12 Exam1 : 25 Exam2 : 39 Final
what should I do?
is there any problem with \n at the end of the search result?
You can correct the amount of extra whitespace between fields by correcting the printf statement:
awk -F ":" 'NR == 1 { split($0, array, FS) } NR >= 2 { for (i=1; i<=NF; i++) printf "%s:%s ", array[i], $i; printf "\n" }' file.txt
Contents of file.txt:
Student Number:Name:Lab1:Lab2:Lab3:Lab4:Lab5:Lab6:Exam1:Exam2:Final
92839342:Robert Bloomingdale:9:26:18:22:9:12:25:39:99
Results:
Student Number:92839342 Name:Robert Bloomingdale Lab1:9 Lab2:26 Lab3:18 Lab4:22 Lab5:9 Lab6:12 Exam1:25 Exam2:39 Final:99
EDIT:
Also, your missing the last value because the file you're working with probably has windows newline endings. To fix this, run: dos2unix file.txt before running your awk code. Alternatively, you can set awk's record separater so that it understands newline endings:
awk 'BEGIN { RS="\r\n"; FS=":" } NR == 1 { split($0, array, FS) } NR >= 2 { for (i=1; i<=NF; i++) printf "%s:%s ", array[i], $i; printf "\n" }' file.txt
EDIT:
The above requires GNU awk, split() splits on the FS by default so no need to use that as an arg, it's common to use "next" rather than specifying opposite conditions, and it's common to use print "" instead of printf "\n" so you use the ORS setting rather than hard-coding it's value in output statements. So, the above should be tweaked to:
gawk 'BEGIN { RS="\r\n"; FS=":" } NR == 1 { split($0, array); next } { for (i=1; i<=NF; i++) printf "%s:%s ", array[i], $i; print "" }' file.txt