I'm new to programming language and stuff
so I have to reverse with awk all the lines and as well all the words in those lines, from a file and print them out.
"File1" to reverse:
aa bb cc
foo do as
And the output printing of the "File1" should be this:
as do foo
cc bb aa
I tried this for word reverse in each line:
for (i=NF; i>1; i--) printf("%s ",$i); printf("%s\n",$1)
but if I want to print the reversed lines I have to do this
{a[NR]=$0
}END{for(i=NR; i; i--) print a[i]}
I need to work with two files with this command in terminal:
awk -f commandFile FileToBePrinted
The problem is I'm beginer in all this and I don't know how to combine those two.
Thanks!
Kev's solution looks to reverse the text in each word. You example output doesn't show that, but his key point is to use a function.
You have the code you need, you just need to rearrange it a little.
cat file1
aa bb cc
foo do as
cat commandFile
function reverse( line ) {
n=split(line, tmpLine)
for (j=n; j>0; j--) {
printf("%s ",tmpLine[j] )
}
}
# main loop
{ a[NR]=$0 }
# print reversed array
END{ for(i=NR; i>0; i--) printf( "%s\n", reverse(a[i]) ) }
Running
awk -f commandFile file1
output
as do foo
cc bb aa
There were a couple of minor changes I made, using n=split(line, tmpLine) ... print tmpLine[j], is a common method of parsing a line of input in a function to print it out. I don't think the $1 vars have scope from a value passed in from an array (your a[i] value), so I changed it to split..tmpLine[j]. I also found that the 'i' variable from END section was kept in scope in the function reverse, so I changed that to j to disambiguate the situation.
I had to figure out a few things, so below is the debug version that I used.
If you're going to have access to gawk, then you'll do well to learn how to use the debugger that is available. If you're using awk/gawk/nawk on systems without a debugger, then this is one method for understanding what is happening in your code. If you're redirecting your programs output to a file or pipe, AND if you system supports "/dev/stderr" notation, you could print the debug lines there, i.e.
#dbg print "#dbg0:line=" line > "/dev/stderr"
Some systems have other notations for accessing stderr, so if you'll be doing this much, it is worthwhile to find out what is available.
cat commandFile.debug
function reverse( line ) {
n=split(line, tmpLine)
#dbg print "#dbg0:line=" line
#dbg print "#dbg1:n=" n "\tj=" j "\ttmpLine[j]=" tmpLine[j]
for (j=n; j>0; j--) {
#dbg print "#dbg2:n=" n "\tj=" j "\ttempLine[j]=" tmpLine[j]
printf("%s ",tmpLine[j] )
}
}
# main loop
{ a[NR]=$0 }
# print reversed array
#dbg END{ print "AT END"; for(i=NR; i>0; i--) printf( "#dbg4:i=%d\t%s\n%s\n", i, a[i] , reverse(a[i])
) }
END{ for(i=NR; i>0; i--) printf( "%s\n", reverse(a[i]) ) }
I hope this helps.
awk '
{
x=reverse($0) (x?"\n":"") x
}
END{
print x
}
function reverse(s, p)
{
for(i=length(s);i>0;i--)
p=p substr(s,i,1)
return p
}' File1
use tac to reverse the lines of the file, then awk to reverse the words.
tac filename | awk '{for (i=NF; i>1; i--) printf("%s ",$i); printf("%s\n",$1)}'
You could also use something like Perl that has list-reversing functions built-in:
tac filename | perl -lane 'print join(" ", reverse(#F))'
Related
I am trying to figure out a way to use awk to analyze my log files from an old application. The log file contains processing information from the application but the structure is a bit messy. But it has a structure like this:
some random text
...
BLOCK-BEGIN bla bla INFO1:VAL1
variable lines of text
INFO2:VAL2
variable lines of text
POSSIBLE-BLOCK-END-PHRASE1
...
some random text
INFO3:not-desired-val5
...
BLOCK-BEGIN bla bla INFO1:VAL3
variable lines of text
INFO2:VAL4
variable lines of text
POSSIBLE-BLOCK-END-PHRASE2
...
What I want to do is to first identify the blocks. In this example above, there are two blocks with same block beginning but different endings. Within each block, I want to extract then few information, i.e. INFO1,INFO2 in the example. The desired output in this case would be:
VAL1,VAL2
VAL3,VAL4
I know some basic of awk. Therefore, any solutions or hints are highly welcome. Thanks
Update: my first attempt
awk '/BLOCK-BEGIN/{printf substr($4,7)",";for (i = 0 ; i < NF; i++) getline; if($0 ~ '/^INFO2/') print substr($0,7)}'
The output is:
VAL1,VAL2
VAL3,VAL4
But is there a better way to do it? Any suggestions?
$ awk -v OFS=',' '
(split($NF,a,/:/) == 2) && sub(/^INFO/,"",a[1]) {
info[a[1]] = a[2]
if ( a[1] == 2 ) {
print info[1], info[2]
}
}
' file
VAL1,VAL2
VAL3,VAL4
Regarding the code you posted in your question:
printf substr($4,7)"," - never do printf <input data> as it'll fail when your input contains printf formatting characters, always do printf "%s", <input data> instead so that could should be written printf "%,",substr($4,7).
getline - there's aonly a few specific situations where getline is the right approach and when it is you have to write it securely. This isn't the right situation and it's not written securely. See awk.freeshell.org/AllAboutGetline.
for (i = 0 ; i < NF; i++) all field numbers, array indices, and string character positions in awk start at 1, not 0, so write your code to match to you don't trip over thinking arrays or anything else start at zero - for (i = 1 ; i <= NF; i++).
'foo... $0 ~ '/^INFO2/' ...bar' those inner 's are terminating the awk script body and so exposing what's between them to the shell for interpretation. Never do that. In this case idk why you thought you needed them as your code should just be 'foo... $0 ~ /^INFO2/ ...bar'.
With your shown samples only, please try following awk code.
awk -F'INFO[0-9]+:' '
/BLOCK-BEGIN/{
if(val2 && val1){
print val1","val2
}
val1=val2=""
val1=$NF
next
}
/^INFO[0-9]+:/{
val2=(val2?val2 ",":"") $NF
}
END{
if(val2 && val1){
print val1","val2
}
}
' Input_file
I need to get all words with one vowel from a file and print one the most common of them. I use awk for matching one-vowel words, but I don't know how to get the most common one.
For example, for text test qwerty word test The result is test, it should print test.
Here is my awk-script:
BEGIN { IGNORECASE=1; }
{
for(i=1; i<=NF; i++){
pattern = "\\<[^AEYUIO]*[AEYUIO][^AEYUIO]*\\>" # pattern for one-vowel words
if($i ~ pattern){
print $i
}
}
}
It prints all the one-vowel words, now I need to get the most common of them. I tried to use sort like this: awk -f script file_with_data | sort, but I didn't find which parameters to use. Help me, please.
$ awk '
BEGIN { IGNORECASE=1; }
{
for(i=1; i<=NF; i++){
pattern = "\\<[^AEYUIO]*[AEYUIO][^AEYUIO]*\\>" # pattern for one-syllable words
if($i ~ pattern){
if(++freq[$i]>maxf){ # keep word count and compare
maxw=$i
maxf=freq[$i]
}
}
}
}
END{
print maxw
}' file
Output:
test
If there are equal counts for several words this only prints one, in that case and since you are already using GNU awk (IGNORECASE):
$ awk '
BEGIN { IGNORECASE=1; }
{
for(i=1; i<=NF; i++){
pattern = "\\<[^AEYUIO]*[AEYUIO][^AEYUIO]*\\>" # pattern for one-syllable words
if($i ~ pattern)
freq[$i]++ # word frequencies
}
}
END{
PROCINFO["sorted_in"]="#val_type_desc" # arm for sorting order
for(w in freq) # get biggest count
if(freq[w]>=p) { # and equal counts
print w
p=freq[w]
} else
break
}' file
Do you need to use awk?
Otherwise you could get it with a mix of grep and uniq -c like:
% echo test qwerty word test The result is test | tr ' ' '\n' | grep -iE "^[^AEYUIO]*[AEYUIO][^AEYUIO]*$" | sort | uniq -c | sort
1 is
1 The
1 word
3 test
I have multi columns file and i want to extract some info in column 71.
I want to extract using tags which the value can be anything, for example i want to just extract AC=* ; AF=* , where the value can be anything .
I found similar question and gave it a try but it didn't work
Extract columns with values matching a specific pattern
Column 71 looks like this:
AC=14511;AC_AFR=382;AC_AMR=1177;AC_Adj=14343;AC_EAS=5;AC_FIN=427;AC_Het=11813;AC_Hom=1265;AC_NFE=11027;AC_OTH=97;AC_SAS=1228;AF=0.137;AN=106198;AN_AFR=8190;AN_AMR=10424;AN_Adj=99264;AN_EAS=7068;AN_FIN=6414;AN_NFE=51090;AN_OTH=658;AN_SAS=15420;BaseQRankSum=1.73;ClippingRankSum=-1.460e-01;DB;DP=1268322;FS=0.000;GQ_MEAN=190.24;GQ_STDDEV=319.67;Het_AFR=358;Het_AMR=1049;Het_EAS=5;Het_FIN=399;Het_NFE=8799;Het_OTH=83;Het_SAS=1120;Hom_AFR=12;Hom_AMR=64;Hom_EAS=0;Hom_FIN=14;Hom_NFE=1114;Hom_OTH=7;Hom_SAS=54;InbreedingCoeff=0.0478;MQ=60.00;MQ0=0;MQRankSum=0.037;NCC=270;POSITIVE_TRAIN_SITE;QD=21.41;ReadPosRankSum=0.212;VQSLOD=4.79;culprit=MQ;DP_HIST=30|3209|1539|1494|30007|7938|4130|2038|1310|612|334|185|97|60|31|25|9|11|7|33,0|66|339|1048|2096|2665|2626|1832|1210|584|323|179|89|54|31|22|7|9|4|15;GQ_HIST=84|66|56|82|3299|568|617|403|250|319|436|310|28566|2937|827|834|451|186|217|12591,15|15|13|16|25|11|22|28|18|38|52|31|65|76|39|83|93|65|97|12397;CSQ=T|ENSG00000186868|ENST00000334239|Transcript|intron_variant||||||rs754512|1||1|MAPT|HGNC|6893|protein_coding||CCDS11502.1|ENSP00000334886|TAU_HUMAN|B4DSE3_HUMAN|UPI0000000C16||||2/8||ENST00000334239.8:c.134-94A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000570299|Transcript|intron_variant&non_coding_transcript_variant||||||rs754512|1||1|MAPT|HGNC|6893|processed_transcript||||||||||2/6||ENST00000570299.1:n.262-94A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000340799|Transcript|intron_variant||||||rs754512|1||1|MAPT|HGNC|6893|protein_coding||CCDS45716.1|ENSP00000340438|TAU_HUMAN||UPI000004EEE6||||3/10||ENST00000340799.5:c.221-94A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000262410|Transcript|intron_variant||||||rs754512|1||1|MAPT|HGNC|6893|protein_coding||CCDS11501.1|ENSP00000262410|TAU_HUMAN||UPI0000EE80B7||||4/13||ENST00000262410.5:c.308-94A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000446361|Transcript|intron_variant||||||rs754512|1||1|MAPT|HGNC|6893|protein_coding||CCDS11500.1|ENSP00000408975|TAU_HUMAN||UPI000004EEE5||||2/9||ENST00000446361.3:c.134-94A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000574436|Transcript|intron_variant||||||rs754512|1||1|MAPT|HGNC|6893|protein_coding||CCDS11499.1|ENSP00000460965|TAU_HUMAN||UPI000002D754||||3/10||ENST00000574436.1:c.308-94A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000571987|Transcript|intron_variant||||||rs754512|1||1|MAPT|HGNC|6893|protein_coding||CCDS11501.1|ENSP00000458742|TAU_HUMAN||UPI0000EE80B7||||3/12||ENST00000571987.1:c.308-94A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000415613|Transcript|intron_variant||||||rs754512|1||1|MAPT|HGNC|6893|protein_coding||CCDS45715.1|ENSP00000410838|TAU_HUMAN||UPI0001AE66E9||||3/13||ENST00000415613.2:c.308-94A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000571311|Transcript|intron_variant&NMD_transcript_variant||||||rs754512|1||1|MAPT|HGNC|6893|nonsense_mediated_decay|||ENSP00000460048||I3L2Z2_HUMAN|UPI00025A2E6E||||4/4||ENST00000571311.1:c.*176-94A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000535772|Transcript|intron_variant||||||rs754512|1||1|MAPT|HGNC|6893|protein_coding||CCDS56033.1|ENSP00000443028|TAU_HUMAN|B4DSE3_HUMAN|UPI000004EEE4||||4/10||ENST00000535772.1:c.308-94A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000576518|Transcript|stop_gained|5499|7|3|K/*|Aag/Tag|rs754512|1||1|MAPT|HGNC|6893|protein_coding|||ENSP00000458621||I3L170_HUMAN&B4DSE3_HUMAN|UPI0001639A7C|||1/7|||ENST00000576518.1:c.7A>T|ENSP00000458621.1:p.Lys3Ter|T:0.1171|||||||||15792962|||||POSITION:0.00682261208576998&ANN_ORF:-255.6993&MAX_ORF:-255.6993|PHYLOCSF_WEAK|ANC_ALLELE|LC,T|ENSG00000186868|ENST00000420682|Transcript|intron_variant||||||rs754512|1||1|MAPT|HGNC|6893|protein_coding||CCDS45716.1|ENSP00000413056|TAU_HUMAN||UPI000004EEE6||||2/9||ENST00000420682.2:c.221-94A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000572440|Transcript|non_coding_transcript_exon_variant&non_coding_transcript_variant|2790|||||rs754512|1||1|MAPT|HGNC|6893|retained_intron|||||||||1/1|||ENST00000572440.1:n.2790A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000351559|Transcript|intron_variant||||||rs754512|1||1|MAPT|HGNC|6893|protein_coding||CCDS11499.1|ENSP00000303214|TAU_HUMAN||UPI000002D754||||4/11||ENST00000351559.5:c.308-94A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000344290|Transcript|intron_variant||||||rs754512|1||1|MAPT|HGNC|6893|protein_coding|YES|CCDS45715.1|ENSP00000340820|TAU_HUMAN||UPI0001AE66E9||||4/14||ENST00000344290.5:c.308-94A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000347967|Transcript|intron_variant||||||rs754512|1||1|MAPT|HGNC|6893|protein_coding|||ENSP00000302706|TAU_HUMAN|B4DSE3_HUMAN|UPI0000173D91||||4/10||ENST00000347967.5:c.32-100A>T||T:0.1171|||||||||15792962||||||||,T|ENSG00000186868|ENST00000431008|Transcript|intron_variant||||||rs754512|1||1|MAPT|HGNC|6893|protein_coding||CCDS56033.1|ENSP00000389250|TAU_HUMAN|B4DSE3_HUMAN|UPI000004EEE4||||3/9||ENST00000431008.3:c.308-94A>T||T:0.1171|||||||||15792962||||||||
The code that i tried:
awk '{
for (i = 1; i <= NF; i++) {
if ($i ~ /AC|AF/) {
printf "%s %s ", $i, $(i + 1)
}
}
print ""
}'
I keep getting syntax error.
output wanted :
AC=14511;AF=0.137
Whenever you have name=value pairs, it's usually simplest to first create an array that maps names to values (n2v[] below) and then you can just access the values by their names.
$ cat file
AC=1;AC_AFR=2;AF=3 AC=4;AC_AFR=5;AF=6
$ cat tst.awk
{
delete n2v
split($2,tmp,/[;=]/)
for (i=1; i in tmp; i+=2) {
n2v[tmp[i]] = tmp[i+1]
}
prt("AC")
prt("AF")
}
function prt(name) { print name, "=", n2v[name] }
$ awk -f tst.awk file
AC = 4
AF = 6
Just change $2 to $71 for your real input.
Something like this should do it (in Gnu awk due to switch):
$ awk '{split($71,a,";");for(i in a )if(a[i]~/^AF/) print a[i]}' foo
AF=0.137
You split the field $71 by ;s, loop thru the array you split to looking for desired match. For multiple matches use switch:
$ awk '{
split($0,a,";");
for(i in a )
switch(a[i]) {
case /^AF=/:
b=b a[i] OFS;
break;
case /^AC=/:
b=b a[i] OFS;
break
}
sub(/.$/,"\n",b);
printf b
}' foo
AC=14511 AF=0.137
EDIT: Now it buffers output to a variable and prints it in the end. You can control the separator with OFS.
How can I use awk to join various fields, given that I don't know how many of them I have? For example, given the input string
aaa/bbb/ccc/ddd/eee
I use -F'/' as delimiter, do some manipulation on aaa, bbb, ccc, ddd, eee (altering, removing...) and I want to join it back to print something line
AAA/bbb/ddd/e
Thanks
... given that I don't know how many of them I have?
Ah, but you do know how many you have. Or you will soon, if you keep reading :-)
Before giving you a record to process, awk will set the NF variable to the number of fields in that record, and you can use for loops to process them (comments aren't part of the script, I've just put them there to explain):
$ echo pax/is/a/love/god | awk -F/ '{
gsub (/god/,"dog",$5); # pax,is,a,love,dog
$4 = ""; # pax,is,a,,dog
$6 = $5; # pax,is,a,,dog,dog
$5 = "rabid"; # pax,is,a,,rabid,dog
printf $1; # output "pax"
for (i = 2; i <= NF; i++) { # output ".<field>"
if ($i != "") { # but only for non-blank fields (skip $4)
printf "."$i;
}
}
printf "\n"; # finish line
}'
pax.is.a.rabid.dog
This shows manipulation of the values, as well as insertion and deletion.
The following will show you how to process each field and do some example manipulations on them.
The only caveat of using the output field separator OFS is that "deleted" fields will still have delimiters as shown in the output below; however it makes the code much simpler if you can live with that.
awk '
BEGIN{FS=OFS="/"}
{
for(i=1;i<=NF;i++){
if($i == "aaa")
$i=toupper($i)
else if($i ~ /c/)
$i=""
else if($i ~ /^eee$/)
$i="e"
}
}1' <<<'aaa/bbb/ccc/ddd/eee'
Output
AAA/bbb//ddd/e
This might work for you:
echo "aaa/bbb/ccc/ddd/eee" |
awk 'BEGIN{FS=OFS="/"}{sub(/../,"",$4);NF=4;print}'
aaa/bbb/ccc/d
To delete fields not at the end use a function to shuffle the values:
echo "aaa/bbb/ccc/ddd/eee" |
awk 'func d(n){for(x=n;x<=NF-1;x++){y=x+1;$x=$y}NF--};BEGIN{FS=OFS="/"}{d(2);print}'
aaa/ccc/ddd/eee
Deletes the second field.
awk -F'/' '{ # I'd suggest to add them to an array, like:
# for (i=1;i<=NF;i++) {a[i]=$i }
# Now manipulate your elements in the array
# then finally print them:
n = asorti(a, dest)
for (i=1;i<=n;i++) { output+=dest[i] "/") }
print gensub("/$","","g",output)
}' INPUTFILE
Doing it this way you can delete elements as well. Note deleting an item can be done like delete array[index].
I am in need of reorganizing a large CSV file. The first column, which is currently a 6 digit number needs to be split up, using commas as the field separator.
For example, I need this:
022250,10:50 AM,274,22,50
022255,11:55 AM,275,22,55
turned into this:
0,2,2,2,5,0,10:50 AM,274,22,50
0,2,2,2,5,5,11:55 AM,275,22,55
Let me know what you think!
Thanks!
It's a lot shorter in perl:
perl -F, -ane '$,=","; print split("",$F[0]), #F[1..$#F]' <file>
Since you don't know perl, a quick explanation. -F, indicates the input field separator is the comma (like awk). -a activates auto-split (into the array #F), -n implicitly wraps the code in a while (<>) { ... } loop, which reads input line-by-line. -e indicates the next argument is the script to run. $, is the output field separator (it gets set iteration of the loop this way, but oh well). split has obvious purpose, and you can see how the array is indexed/sliced. print, when lists as arguments like this, uses the output field separator and prints all their fields.
In awk:
awk -F, '{n=split($1,a,""); for (i=1;i<=n;i++) {printf("%s,",a[i])}; for (i=2;i<NF;i++) {printf("%s,",$i)}; print $NF}' <file>
I think this might work. The split function (at least in the version I am running) splits the value into individual characters if the third parameter is an empty string.
BEGIN{ FS="," }
{
n = split( $1, a, "" );
for ( i = 1; i <= n; i++ )
printf("%s,", a[i] );
sep = "";
for ( i = 2; i <= NF; i++ )
{
printf( "%s%s", sep, $i );
sep = ",";
}
printf("\n");
}
here's another way in awk
$ awk -F"," '{gsub(".",",&",$1);sub("^,","",$1)}1' OFS="," file
0,2,2,2,5,0,10:50 AM,274,22,50
0,2,2,2,5,5,11:55 AM,275,22,55
Here's a variation on a theme. One thing to note is it prints the remaining fields without using a loop. Another is that since you're looping over the characters in the first field anyway, why not just do it without using the null-delimiter feature of split() (which may not be present in some versions of AWK):
awk -F, 'BEGIN{OFS=","} {len=length($1); for (i=1;i<len; i++) {printf "%s,", substr($1,i,1)}; printf "%s", substr($1,len,1);$1=""; print $0}' filename
As a script:
BEGIN {FS = OFS = ","}
{
len = length($1);
for (i=1; i<len; i++)
{printf "%s,", substr($1, i, 1)};
printf "%s", substr($1, len, 1)
$1 = "";
print $0
}