Using SQL for cleaning up JIRA database - sql

Has anyone had luck with removing large amount of issues from a jira database instead of using the frontend? Deleting 60000 issues with the bulktools is not really feasible.
Last time I tried it, the jira went nuts because of its own way of doing indexes.

How about doing a backup to xml, editing the xml, and reimporting?

We got gutsy and did a truncate on the jiraissues table and then use the rebuild index feature on the frontend. It looks like it's working!

This is old, but I see that this question was just edited recently, so to chime in:
Writing directly to the JIRA database is problematic. The reindex feature suggested in the Oct 14 08 answer just rebuilds the Lucene index, so it is unlikely to clean up everything that needs to be cleaned up from the database on a modern JIRA instance. Off the top of my head, this will probably leave data lying around in the following tables, among others:
custom field data (customfieldvalue table)
issue links (issuelink table)
versions and components (nodeassociation table, which contains other stuff too, so be careful!)
remote issue links or wiki mentions (remotelink table)
If one has already done such a manual delete on production, it's always a good idea to run the database integrity checker (YOURJIRAURL/secure/admin/IntegrityChecker!default.jspa) to make sure that nothing got seriously broken.
Fast forwarding to 2014, the best solution is to write a quick shell script that uses the REST API to delete all of the required issues. (The JIRA CLI plugin is usually a good option for automating certain types of tasks too, but as far as I can tell, it does not currently support the deletion of issues, so the REST API is your best bet.)

Related

What's elasticsearch and is it safe to delete logstash?

I have an internal Apache server for testing purpose, not client facing.
I wanted to upgrade the server to apache 2.4, but there is no space left, so I was trying to delete some files on the server.
After checking file size, I found a folder /var/lib/elasticsearch takes 80g space. For example, /var/lib/elasticsearch/elasticsearch/nodes/0/indices/logstash-2015.12.08 takes 60g already. I'm not sure what's elasticsearch. Is it safe if i delete this logstash? Thanks!
Elasticsearch is a search engine, like a NoSql database, and it stores the data in indeces. What you are seeing is the data of one index.
Probobly someone was using the index aroung 2015 when the index was timestamped.
I would just delete it.
I'm afraid that only you can answer that question. One use for logstash+elastic search are to help make sense out of system logs. That combination isn't normally setup by default, so I presume someone set it up at some time for some reason, and it has obviously done some logging. Only you can know if it is still being used, or if it is safe to delete.
As other answers pointed out Elastic search is a distributed search engine. And I believe an earlier user was pushing application or system logs using Logstash to this Elastic search instance. If you can find the source application, check if the log files are already there, if yes, then you can go ahead and delete your index. I highly doubt anyone still needs the logs back from 2015, but it is really your call to see what your application's archiving requirements are and then take necessary action.

SQL (or any relational db) engine with SCM-friendly backing store [duplicate]

I'm doing a web app, and I need to make a branch for some major changes, the thing is, these changes require changes to the database schema, so I'd like to put the entire database under git as well.
How do I do that? is there a specific folder that I can keep under a git repository? How do I know which one? How can I be sure that I'm putting the right folder?
I need to be sure, because these changes are not backward compatible; I can't afford to screw up.
The database in my case is PostgreSQL
Edit:
Someone suggested taking backups and putting the backup file under version control instead of the database. To be honest, I find that really hard to swallow.
There has to be a better way.
Update:
OK, so there' no better way, but I'm still not quite convinced, so I will change the question a bit:
I'd like to put the entire database under version control, what database engine can I use so that I can put the actual database under version control instead of its dump?
Would sqlite be git-friendly?
Since this is only the development environment, I can choose whatever database I want.
Edit2:
What I really want is not to track my development history, but to be able to switch from my "new radical changes" branch to the "current stable branch" and be able for instance to fix some bugs/issues, etc, with the current stable branch. Such that when I switch branches, the database auto-magically becomes compatible with the branch I'm currently on.
I don't really care much about the actual data.
Take a database dump, and version control that instead. This way it is a flat text file.
Personally I suggest that you keep both a data dump, and a schema dump. This way using diff it becomes fairly easy to see what changed in the schema from revision to revision.
If you are making big changes, you should have a secondary database that you make the new schema changes to and not touch the old one since as you said you are making a branch.
I'm starting to think of a really simple solution, don't know why I didn't think of it before!!
Duplicate the database, (both the schema and the data).
In the branch for the new-major-changes, simply change the project configuration to use the new duplicate database.
This way I can switch branches without worrying about database schema changes.
EDIT:
By duplicate, I mean create another database with a different name (like my_db_2); not doing a dump or anything like that.
Use something like LiquiBase this lets you keep revision control of your Liquibase files. you can tag changes for production only, and have lb keep your DB up to date for either production or development, (or whatever scheme you want).
Irmin (branching + time travel)
Flur.ee (immutable + time travel + graph query)
XTDB (formerly called 'CruxDB') (time travel + query)
TerminusDB (immutable + branching + time travel + Graph Query!)
DoltDB (branching + time-travel + SQL query)
Quadrable (branching + remote state verification)
EdgeDB (no real time travel, but migrations derived by the compiler after schema changes)
Migra (diffing for Postgres schemas/data. Auto-generate migration scripts, auto-sync db state)
ImmuDB (immutable + time-travel)
I've come across this question, as I've got a similar problem, where something approximating a DB based Directory structure, stores 'files', and I need git to manage it. It's distributed, across a cloud, using replication, hence it's access point will be via MySQL.
The gist of the above answers, seem to similarly suggest an alternative solution to the problem asked, which kind of misses the point, of using Git to manage something in a Database, so I'll attempt to answer that question.
Git is a system, which in essence stores a database of deltas (differences), which can be reassembled, in order, to reproduce a context. The normal usage of git assumes that context is a filesystem, and those deltas are diff's in that file system, but really all git is, is a hierarchical database of deltas (hierarchical, because in most cases each delta is a commit with at least 1 parents, arranged in a tree).
As long as you can generate a delta, in theory, git can store it. The problem is normally git expects the context, on which it's generating delta's to be a file system, and similarly, when you checkout a point in the git hierarchy, it expects to generate a filesystem.
If you want to manage change, in a database, you have 2 discrete problems, and I would address them separately (if I were you). The first is schema, the second is data (although in your question, you state data isn't something you're concerned about). A problem I had in the past, was a Dev and Prod database, where Dev could take incremental changes to the schema, and those changes had to be documented in CVS, and propogated to live, along with additions to one of several 'static' tables. We did that by having a 3rd database, called Cruise, which contained only the static data. At any point the schema from Dev and Cruise could be compared, and we had a script to take the diff of those 2 files and produce an SQL file containing ALTER statements, to apply it. Similarly any new data, could be distilled to an SQL file containing INSERT commands. As long as fields and tables are only added, and never deleted, the process could automate generating the SQL statements to apply the delta.
The mechanism by which git generates deltas is diff and the mechanism by which it combines 1 or more deltas with a file, is called merge. If you can come up with a method for diffing and merging from a different context, git should work, but as has been discussed you may prefer a tool that does that for you. My first thought towards solving that is this https://git-scm.com/book/en/v2/Customizing-Git-Git-Configuration#External-Merge-and-Diff-Tools which details how to replace git's internal diff and merge tool. I'll update this answer, as I come up with a better solution to the problem, but in my case I expect to only have to manage data changes, in-so-far-as a DB based filestore may change, so my solution may not be exactly what you need.
There is a great project called Migrations under Doctrine that built just for this purpose.
Its still in alpha state and built for php.
http://docs.doctrine-project.org/projects/doctrine-migrations/en/latest/index.html
Take a look at RedGate SQL Source Control.
http://www.red-gate.com/products/sql-development/sql-source-control/
This tool is a SQL Server Management Studio snap-in which will allow you to place your database under Source Control with Git.
It's a bit pricey at $495 per user, but there is a 28 day free trial available.
NOTE
I am not affiliated with RedGate in any way whatsoever.
I've released a tool for sqlite that does what you're asking for. It uses a custom diff driver leveraging the sqlite projects tool 'sqldiff', UUIDs as primary keys, and leaves off the sqlite rowid. It is still in alpha so feedback is appreciated.
Postgres and mysql are trickier, as the binary data is kept in multiple files and may not even be valid if you were able to snapshot it.
https://github.com/cannadayr/git-sqlite
I want to make something similar, add my database changes to my version control system.
I am going to follow the ideas in this post from Vladimir Khorikov "Database versioning best practices". In summary i will
store both its schema and the reference data in a source control system.
for every modification we will create a separate SQL script with the changes
In case it helps!
You can't do it without atomicity, and you can't get atomicity without either using pg_dump or a snapshotting filesystem.
My postgres instance is on zfs, which I snapshot occasionally. It's approximately instant and consistent.
I think X-Istence is on the right track, but there are a few more improvements you can make to this strategy. First, use:
$pg_dump --schema ...
to dump the tables, sequences, etc and place this file under version control. You'll use this to separate the compatibility changes between your branches.
Next, perform a data dump for the set of tables that contain configuration required for your application to operate (should probably skip user data, etc), like form defaults and other data non-user modifiable data. You can do this selectively by using:
$pg_dump --table=.. <or> --exclude-table=..
This is a good idea because the repo can get really clunky when your database gets to 100Mb+ when doing a full data dump. A better idea is to back up a more minimal set of data that you require to test your app. If your default data is very large though, this may still cause problems though.
If you absolutely need to place full backups in the repo, consider doing it in a branch outside of your source tree. An external backup system with some reference to the matching svn rev is likely best for this though.
Also, I suggest using text format dumps over binary for revision purposes (for the schema at least) since these are easier to diff. You can always compress these to save space prior to checking in.
Finally, have a look at the postgres backup documentation if you haven't already. The way you're commenting on backing up 'the database' rather than a dump makes me wonder if you're thinking of file system based backups (see section 23.2 for caveats).
What you want, in spirit, is perhaps something like Post Facto, which stores versions of a database in a database. Check this presentation.
The project apparently never really went anywhere, so it probably won't help you immediately, but it's an interesting concept. I fear that doing this properly would be very difficult, because even version 1 would have to get all the details right in order to have people trust their work to it.
This question is pretty much answered but I would like to complement X-Istence's and Dana the Sane's answer with a small suggestion.
If you need revision control with some degree of granularity, say daily, you could couple the text dump of both the tables and the schema with a tool like rdiff-backup which does incremental backups. The advantage is that instead of storing snapshots of daily backups, you simply store the differences from the previous day.
With this you have both the advantage of revision control and you don't waste too much space.
In any case, using git directly on big flat files which change very frequently is not a good solution. If your database becomes too big, git will start to have some problems managing the files.
Here is what i am trying to do in my projects:
separate data and schema and default data.
The database configuration is stored in configuration file that is not under version control (.gitignore)
The database defaults (for setting up new Projects) is a simple SQL file under version control.
For the database schema create a database schema dump under the version control.
The most common way is to have update scripts that contains SQL Statements, (ALTER Table.. or UPDATE). You also need to have a place in your database where you save the current version of you schema)
Take a look at other big open source database projects (piwik,or your favorite cms system), they all use updatescripts (1.sql,2.sql,3.sh,4.php.5.sql)
But this a very time intensive job, you have to create, and test the updatescripts and you need to run a common updatescript that compares the version and run all necessary update scripts.
So theoretically (and thats what i am looking for) you could
dumped the the database schema after each change (manually, conjob, git hooks (maybe before commit))
(and only in some very special cases create updatescripts)
After that in your common updatescript (run the normal updatescripts, for the special cases) and then compare the schemas (the dump and current database) and then automatically generate the nessesary ALTER Statements. There some tools that can do this already, but haven't found yet a good one.
What I do in my personal projects is, I store my whole database to dropbox and then point MAMP, WAMP workflow to use it right from there.. That way database is always up-to-date where ever I need to do some developing. But that's just for dev! Live sites is using own server for that off course! :)
Storing each level of database changes under git versioning control is like pushing your entire database with each commit and restoring your entire database with each pull.
If your database is so prone to crucial changes and you cannot afford to loose them, you can just update your pre_commit and post_merge hooks.
I did the same with one of my projects and you can find the directions here.
That's how I do it:
Since your have free choise about DB type use a filebased DB like e.g. firebird.
Create a template DB which has the schema that fits your actual branch and store it in your repository.
When executing your application programmatically create a copy of your template DB, store it somewhere else and just work with that copy.
This way you can put your DB schema under version control without the data. And if you change your schema you just have to change the template DB
We used to run a social website, on a standard LAMP configuration. We had a Live server, Test server, and Development server, as well as the local developers machines. All were managed using GIT.
On each machine, we had the PHP files, but also the MySQL service, and a folder with Images that users would upload. The Live server grew to have some 100K (!) recurrent users, the dump was about 2GB (!), the Image folder was some 50GB (!). By the time that I left, our server was reaching the limit of its CPU, Ram, and most of all, the concurrent net connection limits (We even compiled our own version of network card driver to max out the server 'lol'). We could not (nor should you assume with your website) put 2GB of data and 50GB of images in GIT.
To manage all this under GIT easily, we would ignore the binary folders (the folders containing the Images) by inserting these folder paths into .gitignore. We also had a folder called SQL outside the Apache documentroot path. In that SQL folder, we would put our SQL files from the developers in incremental numberings (001.florianm.sql, 001.johns.sql, 002.florianm.sql, etc). These SQL files were managed by GIT as well. The first sql file would indeed contain a large set of DB schema. We don't add user-data in GIT (eg the records of the users table, or the comments table), but data like configs or topology or other site specific data, was maintained in the sql files (and hence by GIT). Mostly its the developers (who know the code best) that determine what and what is not maintained by GIT with regards to SQL schema and data.
When it got to a release, the administrator logs in onto the dev server, merges the live branch with all developers and needed branches on the dev machine to an update branch, and pushed it to the test server. On the test server, he checks if the updating process for the Live server is still valid, and in quick succession, points all traffic in Apache to a placeholder site, creates a DB dump, points the working directory from 'live' to 'update', executes all new sql files into mysql, and repoints the traffic back to the correct site. When all stakeholders agreed after reviewing the test server, the Administrator did the same thing from Test server to Live server. Afterwards, he merges the live branch on the production server, to the master branch accross all servers, and rebased all live branches. The developers were responsible themselves to rebase their branches, but they generally know what they are doing.
If there were problems on the test server, eg. the merges had too many conflicts, then the code was reverted (pointing the working branch back to 'live') and the sql files were never executed. The moment that the sql files were executed, this was considered as a non-reversible action at the time. If the SQL files were not working properly, then the DB was restored using the Dump (and the developers told off, for providing ill-tested SQL files).
Today, we maintain both a sql-up and sql-down folder, with equivalent filenames, where the developers have to test that both the upgrading sql files, can be equally downgraded. This could ultimately be executed with a bash script, but its a good idea if human eyes kept monitoring the upgrade process.
It's not great, but its manageable. Hope this gives an insight into a real-life, practical, relatively high-availability site. Be it a bit outdated, but still followed.
Update Aug 26, 2019:
Netlify CMS is doing it with GitHub, an example implementation can be found here with all information on how they implemented it netlify-cms-backend-github
I say don't. Data can change at any given time. Instead you should only commit data models in your code, schema and table definitions (create database and create table statements) and sample data for unit tests. This is kinda the way that Laravel does it, committing database migrations and seeds.
I would recommend neXtep (Link removed - Domain was taken over by a NSFW-Website) for version controlling the database it has got a good set of documentation and forums that explains how to install and the errors encountered. I have tested it for postgreSQL 9.1 and 9.3, i was able to get it working for 9.1 but for 9.3 it doesn't seems to work.
Use a tool like iBatis Migrations (manual, short tutorial video) which allows you to version control the changes you make to a database throughout the lifecycle of a project, rather than the database itself.
This allows you to selectively apply individual changes to different environments, keep a changelog of which changes are in which environments, create scripts to apply changes A through N, rollback changes, etc.
I'd like to put the entire database under version control, what
database engine can I use so that I can put the actual database under
version control instead of its dump?
This is not database engine dependent. By Microsoft SQL Server there are lots of version controlling programs. I don't think that problem can be solved with git, you have to use a pgsql specific schema version control system. I don't know whether such a thing exists or not...
Use a version-controlled database, of which there are now several.
https://www.dolthub.com/blog/2021-09-17-database-version-control/
These products don't apply version control on top of another type of database -- they are their own database engines that support version control operations. So you need to migrate to them or start building on them in the first place.
I write one of them, DoltDB, which combines the interfaces of MySQL and Git. Check it out here:
https://github.com/dolthub/dolt
I wish it were simpler. Checking in the schema as a text file is a good start to capture the structure of the DB. For the content, however, I have not found a cleaner, better method for git than CSV files. One per table. The DB can then be edited on multiple branches and merges extremely well.

Crm2013/15 Online and queries on huge data volumes

I'm working on a couple of million records, as soon as I try to run an advanced find, and put as a criteria a linked entity, the advanced find goes in timeout.
Create custom views on this allows me to filter properly? Anyone knows the proper way of using the advanced find this way? Are there limitations on the out of the box CRM that i should be aware of?
In CRM 2013 - it is possible to add indexes for specific fields by adding the columns to the quick find view for the entity.
You will need to wait for the Indexing Management Job to run (which is run every 24 hours by default) - see http://blogs.msdn.com/b/darrenliu/archive/2014/04/02/crm-2013-maintenance-jobs.aspx.
In previous version of CRM, it was necessary to add the indexes directly to the database - this may be necessary for more complex queries.
was too early to post an answer. The problem that I encountered was related to the OOB advanced find. Looking for example for an account with some related contacts (a really plain search with a linked entity) i had a SQL timeout. Everything was OOB so I was a little bit clueless and I opened a case to Microsoft. They found a bug, if i was changing the sorting the advanced find started to work again. They are still investigating. So wasn't a setting problem but a crm bug.

Using Phabricator for a full code audit

I recently got Phabricator installed and am hoping to use it for our future code reviews. Once issue I'm having is that we have a couple of projects that have never been reviewed/audited, and we're hoping to sit down and audit them.
However, I'm not sure how we can go about doing that using Phabricator. When it comes to auditing, Phabricator seems geared towards auditing individual commits, rather than a full codebase. I liked the ability to browse through the code in Phabricator, highlight sections and comment them (especially since we've got multiple people reviewing the same code, one of which is in a very different timezone), but I can't do that with the regular code viewer.
Is there a way to do a full code audit of an existing project on Phabricator, while still benefitting from the review features they have such as adding comments?
This feature doesn't exist in Phabricator. See the following:
https://secure.phabricator.com/T5744
https://secure.phabricator.com/T4348

Migrate from youtrack to jira

After using youtrack for quite a while my organization is considering a move to JIRA (because of many reasons). However JIRA doesn't seem to include a youtrack importer/migration out of the box (though there seems to be plenty of importers/migrations the other way around).
Has anyone migrated from youtrack to JIRA and have any experience in this?
Edit:
To anyone who might have this problem later, my final solution ended up something like this:
transfer all "basic" data by hand (user accounts, basic project setup etc)
write a small C# program using the atlassian sdk and the youtrack sdk that transfers from one to the other (creating empty placeholder issues if issues was missing due to someone deleting them in youtrack in order to keep numbering).
This approach worked good enough and I managed to transfer pretty much all data without any loss of any very important data (though of course all timestamps are messed up now, but we saw that as an acceptable loss).
Important to know is that youtrack handles issues moved from one project to another a bit counter-intuitive (they still show up in their first project even when they're moved away from there, but they have an issue id from their new project - a slight wtf when I ran into that the first time).
Also, while the atlassian sdk did allow me to "spoof" the creator of an issue (that is, being logged in as used A and creating an issue while telling the system that it's actually user B who is creating this issue) it does not allow you to do this with comments. So in order to transfer those properly I had to actually loop through the comments and log in with the corresponding new user and post the comments.
Also, attachments from youtrack was a bit annoying to download, so I ended up having to download those "by hand". :/
But all in all, it was relatively pain-free. Some assembly required, some final touch-ups required, but it was all done within a couple of days.
I had the same problem. After a discussion with JIM (Jira Importer) developer, I used YouTrack Rest API and Python script to make JSON files. Then I used JIM JSON import.
With this solution you can import almost all fields from YT - the standard one and files with description, links between issues and projects and so on...
I don't know if I can push it to GitHub, I have to ask my boss - I did it during my work hours.... But of course you can ask me if you want.
The easiest approach is probably to export the data from youtrack into CSV and use the JIRA CSV importer. You may have to modify some of the data to fit the expected format for the CSV importer