Where is the list of available built-in colormap names? - matplotlib

Question
Where in the matplotlib documentations lists the name of available built-in colormap names to set as the name argument in matplotlib.cm.get_cmap(name)?
Choosing Colormaps in Matplotlib says:
Matplotlib has a number of built-in colormaps accessible via matplotlib.cm.get_cmap.
matplotlib.cm.get_cmap says:
matplotlib.cm.get_cmap(name=None, lut=None)
Get a colormap instance, defaulting to rc values if name is None.
name: matplotlib.colors.Colormap or str or None, default: None
https://www.kite.com/python/docs/matplotlib.pyplot.colormaps shows multiple names.
autumn sequential linearly-increasing shades of red-orange-yellow
bone sequential increasing black-white color map with a tinge of blue, to emulate X-ray film
cool linearly-decreasing shades of cyan-magenta
copper sequential increasing shades of black-copper
flag repetitive red-white-blue-black pattern (not cyclic at endpoints)
gray sequential linearly-increasing black-to-white grayscale
hot sequential black-red-yellow-white, to emulate blackbody radiation from an object at increasing temperatures
hsv cyclic red-yellow-green-cyan-blue-magenta-red, formed by changing the hue component in the HSV color space
inferno perceptually uniform shades of black-red-yellow
jet a spectral map with dark endpoints, blue-cyan-yellow-red; based on a fluid-jet simulation by NCSA [1]
magma perceptually uniform shades of black-red-white
pink sequential increasing pastel black-pink-white, meant for sepia tone colorization of photographs
plasma perceptually uniform shades of blue-red-yellow
prism repetitive red-yellow-green-blue-purple-...-green pattern (not cyclic at endpoints)
spring linearly-increasing shades of magenta-yellow
summer sequential linearly-increasing shades of green-yellow
viridis perceptually uniform shades of blue-green-yellow
winter linearly-increasing shades of blue-green
However, simply google 'matplotlib colormap names' seems not hitting the right documentation. I suppose there is a page listing the names as a enumeration or constant strings. Please help find it out.

There is some example code in the documentation (thanks to #Patrick Fitzgerald for posting the link in the comments, because it's not half as easy to find as it should be) which demonstrates how to generate a plot with an overview of the installed colormaps.
However, this uses an explicit list of maps, so it's limited to the specific version of matplotlib for which the documentation was written, as maps are added and removed between versions. To see what exactly your environment has, you can use this (somewhat crudely) adapted version of the code:
import numpy as np
import matplotlib.pyplot as plt
gradient = np.linspace(0, 1, 256)
gradient = np.vstack((gradient, gradient))
def plot_color_gradients(cmap_category, cmap_list):
# Create figure and adjust figure height to number of colormaps
nrows = len(cmap_list)
figh = 0.35 + 0.15 + (nrows + (nrows - 1) * 0.1) * 0.22
fig, axs = plt.subplots(nrows=nrows + 1, figsize=(6.4, figh))
fig.subplots_adjust(top=1 - 0.35 / figh, bottom=0.15 / figh,
left=0.2, right=0.99)
axs[0].set_title(cmap_category + ' colormaps', fontsize=14)
for ax, name in zip(axs, cmap_list):
ax.imshow(gradient, aspect='auto', cmap=plt.get_cmap(name))
ax.text(-0.01, 0.5, name, va='center', ha='right', fontsize=10,
transform=ax.transAxes)
# Turn off *all* ticks & spines, not just the ones with colormaps.
for ax in axs:
ax.set_axis_off()
cmaps = [name for name in plt.colormaps() if not name.endswith('_r')]
plot_color_gradients('all', cmaps)
plt.show()
This plots just all of them, without regarding the categories.
Since plt.colormaps() produces a list of all the map names, this version only removes all the names ending in '_r', (because those are the inverted versions of the other ones), and plots them all.
That's still a fairly long list, but you can have a look and then manually update/remove items from cmaps narrow it down to the ones you would consider for a given task.
You can also automatically reduce the list to monochrome/non-monochrome maps, because they provide that properties as an attribute:
cmaps_mono = [name for name in cmaps if plt.get_cmap(name).is_gray()]
cmaps_color = [name for name in cmaps if not plt.get_cmap(name).is_gray()]
That should at least give you a decent starting point.
It'd be nice if there was some way within matplotlib to select just certain types of maps (categorical, perceptually uniform, suitable for colourblind viewers ...), but I haven't found a way to do that automatically.

You can use my CMasher to make simple colormap overviews of a list of colormaps.
In your case, if you want to see what every colormap in MPL looks like, you can use the following:
import cmasher as cmr
import matplotlib.pyplot as plt
cmr.create_cmap_overview(plt.colormaps(), savefig='MPL_cmaps.png')
This will give you an overview with all colormaps that are registered in MPL, which will be all built-in colormaps and all colormaps my CMasher package adds, like shown below:

Related

Specify Matplotlib's kwargs to Seaborn's displot when hue is used

Suppose we have this:
import seaborn as sns
import pandas as pd
import numpy as np
samples = 2**13
data = pd.DataFrame({'Values': list(np.random.normal(size=samples)) + list(np.random.uniform(size=samples)),
'Kind': ['Normal'] * samples + ['Uniform'] * samples})
sns.displot(data, hue='Kind', x='Values', fill=True)
I want my Normal's histogram (or KDE) emphasized. I'd like it in red and non transparent in the background. Uniform should have alpha = .5.
How do I specify these style parameters in a "per hue" manner?
It's possible to do it with two separate histplots on the same Axes, as #Redox suggested. We can basically recreate the same plot, but with fine-grade control over colours and alpha. However I had to explicitly pass the number of bins in to get the same plot as yours. I also needed to define the colour for Uniform otherwise a ghost element would be added to the legend! I used C1, meaning the first default colour.
_, ax = plt.subplots()
sns.histplot(data=data[data.Kind=='Normal'], x="Values", ax=ax, label='Normal', color='tab:red',bins=130,alpha=1)
sns.histplot(data=data[data.Kind=='Uniform'], x="Values", ax=ax, label='Uniform', color='C1',bins=17, alpha=.5)
ax.set_xlabel('')
ax.legend()
Note that if you just want to set the colour without alpha you can already do this on a displot via the palette argument - pass in a dictionary of your unique hue values to colour names. However, the alpha that you pass in must be a scalar. I tried to use this clever answer to set colours as RGBA colours which include alpha, which seems to work with other figure level plots in Seaborn. However, displot overrides this and sets the alpha separately!

Adding a Rectangle Patch and Text Patch to 3D Collection in Matplotlib

Problem Statement
I'm attempting to add two patches -- a rectangle patch and a text patch -- to the same space within a 3D plot. The ultimate goal is to annotate the rectangle patch with a corresponding value (about 20 rectangles across 4 planes -- see Figure 3). The following code does not get all the way there, but does demonstrate a rendering issue where sometimes the text patch is completely visible and sometimes it isn't -- interestingly, if the string doesn't extend outside the rectangle patch, it never seems to become visible at all. The only difference between Figures 1 and 2 is the rotation of the plot viewer image. I've left the cmap code in the example below because it's a requirement of the project (and just in case it affects the outcome).
Things I've Tried
Reversing the order that the patches are drawn.
Applying zorder values -- I think art3d.pathpatch_2d_to_3d is overriding that.
Creating a patch collection -- I can't seem to find a way to add the rectangle patch and the text patch to the same 3D collection.
Conclusion
I suspect that setting zorder to each patch before adding them to a 3D collection may be the solution, but I can't seem to find a way to get to that outcome. Similar questions suggest this, but I haven't been able to apply their answers to this problem specifically.
Environment
macOS: Big Sur 11.2.3
Python 3.8
Matplotlib 3.3.4
Figure 1
Figure 2
Figure 3
The Code
Generates Figures 1 and 2 (not 3).
#! /usr/bin/env python3
# -*- coding: utf-8 -*-
from matplotlib.patches import Rectangle, PathPatch
from matplotlib.text import TextPath
from matplotlib.transforms import Affine2D
import mpl_toolkits.mplot3d.art3d as art3d
import matplotlib.pyplot as plt
from matplotlib.colors import Normalize
plt.style.use('dark_background')
fig = plt.figure()
ax = fig.gca(projection='3d')
cmap = plt.cm.bwr
norm = Normalize(vmin=50, vmax=80)
base_color = cmap(norm(50))
# Draw box
box = Rectangle((25, 25), width=50, height=50, color=cmap(norm(62)), ec='black', alpha=1)
ax.add_patch(box)
art3d.pathpatch_2d_to_3d(box, z=1, zdir="z")
# Draw text
text_path = TextPath((60, 50), "xxxx", size=10)
trans = Affine2D().rotate(0).translate(0, 1)
p1 = PathPatch(trans.transform_path(text_path))
ax.add_patch(p1)
art3d.pathpatch_2d_to_3d(p1, z=1, zdir="z")
ax.set_xlabel('x')
ax.set_xlim(0, 100)
ax.set_xticklabels([])
ax.xaxis.set_pane_color(base_color)
ax.set_ylabel('y')
ax.set_ylim(0, 100)
ax.set_yticklabels([])
ax.yaxis.set_pane_color(base_color)
ax.set_zlabel('z')
ax.set_zlim(1, 4)
ax.set_zticks([1, 2, 3, 4])
ax.zaxis.set_pane_color(base_color)
ax.set_zticklabels([])
plt.show()
This is a well-known problem with matplotlib 3D plotting: objects are drawn in a particular order, and those plotted last appear on "top" of the others, regardless of which should be in front in a "true" 3D plot.
See the FAQ here: https://matplotlib.org/mpl_toolkits/mplot3d/faq.html#my-3d-plot-doesn-t-look-right-at-certain-viewing-angles
My 3D plot doesn’t look right at certain viewing angles
This is probably the most commonly reported issue with mplot3d. The problem is that – from some viewing angles – a 3D object would appear in front of another object, even though it is physically behind it. This can result in plots that do not look “physically correct.”
Unfortunately, while some work is being done to reduce the occurrence of this artifact, it is currently an intractable problem, and can not be fully solved until matplotlib supports 3D graphics rendering at its core.
The problem occurs due to the reduction of 3D data down to 2D + z-order scalar. A single value represents the 3rd dimension for all parts of 3D objects in a collection. Therefore, when the bounding boxes of two collections intersect, it becomes possible for this artifact to occur. Furthermore, the intersection of two 3D objects (such as polygons or patches) can not be rendered properly in matplotlib’s 2D rendering engine.
This problem will likely not be solved until OpenGL support is added to all of the backends (patches are greatly welcomed). Until then, if you need complex 3D scenes, we recommend using MayaVi.

How do I use colourmaps with variable alpha in a Seaborn kdeplot without seeing the contour lines?

Python version: 3.6.4 (Anaconda on Windows)
Seaborn: 0.8.1
Matplotlib: 2.1.2
I'm trying to create a 2D Kernel Density plot using Seaborn but I want each step in the colourmap to have a different alpha value. I had a look at this question to create a matplotlib colourmap with alpha values: Add alpha to an existing matplotlib colormap.
I have a problem in that the lines between contours are visible. The result I get is here:
I thought that I had found the answer when I found this question: Hide contour linestroke on pyplot.contourf to get only fills. I tried the method outlined in the answer (using set_edgecolor("face") but it did not work in this case. That question also seemed to be related to vector graphics formats and I am just writing out a PNG.
Here is my script:
import numpy as np
import seaborn as sns
import matplotlib.colors as cols
import matplotlib.pyplot as plt
def alpha_cmap(cmap):
my_cmap = cmap(np.arange(cmap.N))
# Set a square root alpha.
x = np.linspace(0, 1, cmap.N)
my_cmap[:,-1] = x ** (0.5)
my_cmap = cols.ListedColormap(my_cmap)
return my_cmap
xs = np.random.uniform(size=100)
ys = np.random.uniform(size=100)
kplot = sns.kdeplot(data=xs, data2=ys,
cmap=alpha_cmap(plt.cm.viridis),
shade=True,
shade_lowest=False,
n_levels=30)
plt.savefig("example_plot.png")
Guided by some comments on this question I have tried some other methods that have been successful when this problem has come up. Based on this question (Matplotlib Contourf Plots Unwanted Outlines when Alpha < 1) I have tried altering the plot call to:
sns.kdeplot(data=xs, data2=ys,
cmap=alpha_cmap(plt.cm.viridis),
shade=True,
shade_lowest=False,
n_levels=30,
antialiased=True)
With antialiased=True the lines between contours are replaced by a narrow white line:
I have also tried an approach similar to this question - Pyplot pcolormesh confused when alpha not 1. This approach is based on looping over the PathCollections in kplot.collections and tuning the parameters of the edges so that they become invisible. I have tried adding this code and tweaking the linewidth -
for thing in kplot.collections:
thing.set_edgecolor("face")
thing.set_linewidth(0.01)
fig.canvas.draw()
This results in a mix of white and dark lines - .
I believe that I will not be able to tune the line width to make the lines disappear because of the variable width of the contour bands.
Using both methods (antialiasing + linewidth) makes this version, which looks cool but isn't quite what I want:
I also found this question - Changing Transparency of/Remove Contour Lines in Matplotlib
This one suggests overplotting a second plot with a different number of contour levels on the same axis, like:
kplot = sns.kdeplot(data=xs, data2=ys,
ax=ax,
cmap=alpha_cmap(plt.cm.viridis),
shade=True,
shade_lowest=False,
n_levels=30,
antialiased=True)
kplot = sns.kdeplot(data=xs, data2=ys,
ax=ax,
cmap=alpha_cmap(plt.cm.viridis),
shade=True,
shade_lowest=False,
n_levels=35,
antialiased=True)
This results in:
This is better, and almost works. The problem here is I need variable (and non-linear) alpha throughout the colourmap. The variable banding and lines seem to be a result of the combinations of alpha when contours are plotted over each other. I also still see some clear/white lines in the result.

How do I create a bar chart that starts and ends in a certain range

I created a computer model (just for fun) to predict soccer match result. I ran a computer simulation to predict how many points that a team will gain. I get a list of simulation result for each team.
I want to plot something like confidence interval, but using bar chart.
I considered the following option:
I considered using matplotlib's candlestick, but this is not Forex price.
I also considered using matplotlib's errorbar, especially since it turns out I can mashes graphbar + errorbar, but it's not really what I am aiming for. I am actually aiming for something like Nate Silver's 538 election prediction result.
Nate Silver's is too complex, he colored the distribution and vary the size of the percentage. I just want a simple bar chart that plots on a certain range.
I don't want to resort to plot bar stacking like shown here
Matplotlib's barh (or bar) is probably suitable for this:
import numpy as np
import matplotlib.pylab as pl
x_mean = np.array([1, 3, 6 ])
x_std = np.array([0.3, 1, 0.7])
y = np.array([0, 1, 2 ])
pl.figure()
pl.barh(y, width=2*x_std, left=x_mean-x_std)
The bars have a horizontal width of 2*x_std and start at x_mean-x_std, so the center denotes the mean value.
It's not very pretty (yet), but highly customizable:

Coloring Intersection of Circles/Patches in Matplotlib

The following code:
# in ipython notebook, enable inline plotting with:
# %pylab inline --no-import-all
import matplotlib.pyplot as plt
# create some circles
circle1 = plt.Circle((-.5,0), 1, color='r', alpha=.2)
circle2 = plt.Circle(( .5,0), 1, color='b', alpha=.2)
# add them to the plot (bad form to use ;, but saving space)
# and control the display a bit
ax = plt.gca()
ax.add_artist(circle1); ax.add_artist(circle2)
ax.set_xlim(-2, 2); ax.set_ylim(-2, 2)
ax.set_aspect('equal')
# display it
plt.plot()
Produces the following plot:
I would like to specify the colors of the four regions (1) the background (currently white), (2 and 3) each individual event (the non-overlapping areas, currently blue and red), and (4) the intersection event (currently blended to purple). For example, I might color them red, green, blue, yellow -or- I might give them four different, precisely specified grayscale values (the later is more likely). [The colors will be generated based on characteristics of the underlying data.]
I specifically do not want to use alpha blending to "infer" a color in the intersection. I need to explicitly control the colors of all four regions.
I can think of a few strategies to solve this:
Ask mpl to extract the "primitive" patch objects that make up the three distinctly colored graphical regions (and do something similar to operate on the background) and then color them.
Given the circles, manually compute their intersections and color that intersection (somehow). Going point by point seems ugly.
Thanks!
I'm not 100% sure but I think matplotlib does not have the functionality to intersect polygons. But you could use shapely:
import shapely.geometry as sg
import matplotlib.pyplot as plt
import descartes
# create the circles with shapely
a = sg.Point(-.5,0).buffer(1.)
b = sg.Point(0.5,0).buffer(1.)
# compute the 3 parts
left = a.difference(b)
right = b.difference(a)
middle = a.intersection(b)
# use descartes to create the matplotlib patches
ax = plt.gca()
ax.add_patch(descartes.PolygonPatch(left, fc='b', ec='k', alpha=0.2))
ax.add_patch(descartes.PolygonPatch(right, fc='r', ec='k', alpha=0.2))
ax.add_patch(descartes.PolygonPatch(middle, fc='g', ec='k', alpha=0.2))
# control display
ax.set_xlim(-2, 2); ax.set_ylim(-2, 2)
ax.set_aspect('equal')
plt.show()