nextflow

nextflow

handle input from multiple processes example in nextflow dsl2

How to filter list of tuples?

Nexflow only processes one of my paired sample in a subworkflow

Nextflow DSL2: how to combine outputs (channels) from multiple processes into input of another process by part of filename?

How do I process files with matching pattern in nextflow?

Nextflow unzip gz file error: not a regular file

Nextflow DSL2 output from different processes mixed up as input in later processes

Get array from 1 to number of columns of csv in nextflow

Best way to combine Nextflow pipelines within Nextflow

How to save the multiple output of single process in publishDir in Nextflow

Merge multiple output chunks to one file in nextflow

publish two separate result directories from nextflow process

Passing list of filenames to nextflow process

Nextflow name collision

How to access the version information within Nextflow's manifest scope

how to get first items in channel of tuples in Nextflow

How to force Nextflow process to recalculate and ignore cache in resumed workflow

getting weird "missing output " error when running a nextflow pipeline

Nextflow - No such variable: prefix

Execute a nextflow process for each CSV record (line)

Error caused by missing output files while running Nextflow

getting weird error while running a nextflow pipeline

How to process multiple samples as input in Nextflow?

Nextflow tutorial getting error "no such variable"

Why is a conditional channel source causing a downstream process to not execute an instance for each value in a different channel?

Nextflow report an error : No such variable : from

nextflow's process don't chain, stops after first success

Nextflow: Not all items in channel used by process

Input param not working as conditional switch in Nextflow processes

How to get the path of the current temporary working directory in nextflow

NextFlow: How to fail if channel is empty ( .ifEmpty() )

Why do I get a `java.nio.file.ProviderMismatchException` when I access `isEmpty()` on a staged file

How to output a value channel that has paths using Nextflow

Nextflow: publishDir, output channels, and output subdirectories

Cannot find ./bin scripts when running Nextflow with a container

Unable to install nextflow correctly

Nextflow dynamic includes and output

change the location of the .nextflow folder?

Problems getting two output files in Nextflow

Nextflow, Limit the number of concurrent workers in Google

nextflow input and output a tuple with keys

`errorStrategy` setting to stop current process but continue pipeline

Nextflow: add unique ID, hash, or row number to tuple

Running jobs concurrently with multiple steps

nextflow: change part of the script basing on a parameter

Take process input from either of two channels

Extract sample ids from nextflow fromPath()

nextflow .collect() method in RNA-seq example workflow

How to merge multiple grouped output files in nextflow

Provide NextFlow workflow inputs (not parameters) via the CLI

How to enumerate files in channel to use `collectFile`

Nextflow and Preemptible Machines in Google Life Sciences

Nextflow join file to tuple

Overriding Nextflow Parameters with Commandline Arguments

Nextflow multiple inputs with different number of files

Nextflow deepTools fingerprint

Nextflow in cmd process is expanded

Nextflow Channel create with condition

How to call a process in workflow.onError

Nextflow: output not being "found", despite setting publishDir

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