I followed the following steps to install ELMoForManyLangs
! git clone https://github.com/HIT-SCIR/ELMoForManyLangs.git
cd ELMoForManyLangs/
! python setup.py install
from elmoformanylangs import Embedder
ModuleNotFoundError Traceback (most recent call last)
in ()
----> 1 from elmoformanylangs import Embedder
2 # e = Embedder('./zhs.model/')
But I did successfully deployed it.
running install
running bdist_egg
running egg_info
creating elmoformanylangs.egg-info
writing elmoformanylangs.egg-info/PKG-INFO
writing dependency_links to elmoformanylangs.egg-info/dependency_links.txt
writing requirements to elmoformanylangs.egg-info/requires.txt
writing top-level names to elmoformanylangs.egg-info/top_level.txt
writing manifest file 'elmoformanylangs.egg-info/SOURCES.txt'
writing manifest file 'elmoformanylangs.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
running build_py
creating build
creating build/lib
creating build/lib/elmoformanylangs
copying elmoformanylangs/biLM.py -> build/lib/elmoformanylangs
copying elmoformanylangs/__init__.py -> build/lib/elmoformanylangs
copying elmoformanylangs/__main__.py -> build/lib/elmoformanylangs
copying elmoformanylangs/utils.py -> build/lib/elmoformanylangs
copying elmoformanylangs/elmo.py -> build/lib/elmoformanylangs
copying elmoformanylangs/dataloader.py -> build/lib/elmoformanylangs
copying elmoformanylangs/frontend.py -> build/lib/elmoformanylangs
creating build/lib/elmoformanylangs/modules
copying elmoformanylangs/modules/lstm_cell_with_projection.py -> build/lib/elmoformanylangs/modules
copying elmoformanylangs/modules/encoder_base.py -> build/lib/elmoformanylangs/modules
copying elmoformanylangs/modules/embedding_layer.py -> build/lib/elmoformanylangs/modules
copying elmoformanylangs/modules/lstm.py -> build/lib/elmoformanylangs/modules
copying elmoformanylangs/modules/__init__.py -> build/lib/elmoformanylangs/modules
copying elmoformanylangs/modules/util.py -> build/lib/elmoformanylangs/modules
copying elmoformanylangs/modules/classify_layer.py -> build/lib/elmoformanylangs/modules
copying elmoformanylangs/modules/token_embedder.py -> build/lib/elmoformanylangs/modules
copying elmoformanylangs/modules/elmo.py -> build/lib/elmoformanylangs/modules
copying elmoformanylangs/modules/highway.py -> build/lib/elmoformanylangs/modules
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/egg
creating build/bdist.linux-x86_64/egg/elmoformanylangs
copying build/lib/elmoformanylangs/biLM.py -> build/bdist.linux-x86_64/egg/elmoformanylangs
copying build/lib/elmoformanylangs/__init__.py -> build/bdist.linux-x86_64/egg/elmoformanylangs
copying build/lib/elmoformanylangs/__main__.py -> build/bdist.linux-x86_64/egg/elmoformanylangs
copying build/lib/elmoformanylangs/utils.py -> build/bdist.linux-x86_64/egg/elmoformanylangs
copying build/lib/elmoformanylangs/elmo.py -> build/bdist.linux-x86_64/egg/elmoformanylangs
creating build/bdist.linux-x86_64/egg/elmoformanylangs/modules
copying build/lib/elmoformanylangs/modules/lstm_cell_with_projection.py -> build/bdist.linux-x86_64/egg/elmoformanylangs/modules
copying build/lib/elmoformanylangs/modules/encoder_base.py -> build/bdist.linux-x86_64/egg/elmoformanylangs/modules
copying build/lib/elmoformanylangs/modules/embedding_layer.py -> build/bdist.linux-x86_64/egg/elmoformanylangs/modules
copying build/lib/elmoformanylangs/modules/lstm.py -> build/bdist.linux-x86_64/egg/elmoformanylangs/modules
copying build/lib/elmoformanylangs/modules/__init__.py -> build/bdist.linux-x86_64/egg/elmoformanylangs/modules
copying build/lib/elmoformanylangs/modules/util.py -> build/bdist.linux-x86_64/egg/elmoformanylangs/modules
copying build/lib/elmoformanylangs/modules/classify_layer.py -> build/bdist.linux-x86_64/egg/elmoformanylangs/modules
copying build/lib/elmoformanylangs/modules/token_embedder.py -> build/bdist.linux-x86_64/egg/elmoformanylangs/modules
copying build/lib/elmoformanylangs/modules/elmo.py -> build/bdist.linux-x86_64/egg/elmoformanylangs/modules
copying build/lib/elmoformanylangs/modules/highway.py -> build/bdist.linux-x86_64/egg/elmoformanylangs/modules
copying build/lib/elmoformanylangs/dataloader.py -> build/bdist.linux-x86_64/egg/elmoformanylangs
copying build/lib/elmoformanylangs/frontend.py -> build/bdist.linux-x86_64/egg/elmoformanylangs
byte-compiling build/bdist.linux-x86_64/egg/elmoformanylangs/biLM.py to biLM.cpython-36.pyc
byte-compiling build/bdist.linux-x86_64/egg/elmoformanylangs/__init__.py to __init__.cpython-36.pyc
byte-compiling build/bdist.linux-x86_64/egg/elmoformanylangs/__main__.py to __main__.cpython-36.pyc
byte-compiling build/bdist.linux-x86_64/egg/elmoformanylangs/utils.py to utils.cpython-36.pyc
byte-compiling build/bdist.linux-x86_64/egg/elmoformanylangs/elmo.py to elmo.cpython-36.pyc
byte-compiling build/bdist.linux-x86_64/egg/elmoformanylangs/modules/lstm_cell_with_projection.py to lstm_cell_with_projection.cpython-36.pyc
byte-compiling build/bdist.linux-x86_64/egg/elmoformanylangs/modules/encoder_base.py to encoder_base.cpython-36.pyc
byte-compiling build/bdist.linux-x86_64/egg/elmoformanylangs/modules/embedding_layer.py to embedding_layer.cpython-36.pyc
byte-compiling build/bdist.linux-x86_64/egg/elmoformanylangs/modules/lstm.py to lstm.cpython-36.pyc
byte-compiling build/bdist.linux-x86_64/egg/elmoformanylangs/modules/__init__.py to __init__.cpython-36.pyc
byte-compiling build/bdist.linux-x86_64/egg/elmoformanylangs/modules/util.py to util.cpython-36.pyc
byte-compiling build/bdist.linux-x86_64/egg/elmoformanylangs/modules/classify_layer.py to classify_layer.cpython-36.pyc
byte-compiling build/bdist.linux-x86_64/egg/elmoformanylangs/modules/token_embedder.py to token_embedder.cpython-36.pyc
byte-compiling build/bdist.linux-x86_64/egg/elmoformanylangs/modules/elmo.py to elmo.cpython-36.pyc
byte-compiling build/bdist.linux-x86_64/egg/elmoformanylangs/modules/highway.py to highway.cpython-36.pyc
byte-compiling build/bdist.linux-x86_64/egg/elmoformanylangs/dataloader.py to dataloader.cpython-36.pyc
byte-compiling build/bdist.linux-x86_64/egg/elmoformanylangs/frontend.py to frontend.cpython-36.pyc
creating build/bdist.linux-x86_64/egg/EGG-INFO
copying elmoformanylangs.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO
copying elmoformanylangs.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying elmoformanylangs.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying elmoformanylangs.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying elmoformanylangs.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
zip_safe flag not set; analyzing archive contents...
creating dist
creating 'dist/elmoformanylangs-0.0.2-py3.6.egg' and adding 'build/bdist.linux-x86_64/egg' to it
removing 'build/bdist.linux-x86_64/egg' (and everything under it)
Processing elmoformanylangs-0.0.2-py3.6.egg
Copying elmoformanylangs-0.0.2-py3.6.egg to /usr/local/lib/python3.6/dist-packages
Adding elmoformanylangs 0.0.2 to easy-install.pth file
Installed /usr/local/lib/python3.6/dist-packages/elmoformanylangs-0.0.2-py3.6.egg
Processing dependencies for elmoformanylangs==0.0.2
Searching for overrides
Reading https://pypi.org/simple/overrides/
Downloading https://files.pythonhosted.org/packages/7a/b2/2cb6a3fc8ee1dc8617e07e476be19723748ddfcce0c6b9db7a5f2d5b9598/overrides-2.0.tar.gz#sha256=63293d9b03629507396ddd961bd5773f136d602f34b9b3da93351dfa163fc0d9
Best match: overrides 2.0
Processing overrides-2.0.tar.gz
Writing /tmp/easy_install-_c47zox2/overrides-2.0/setup.cfg
Running overrides-2.0/setup.py -q bdist_egg --dist-dir /tmp/easy_install-_c47zox2/overrides-2.0/egg-dist-tmp-677wh9fn
zip_safe flag not set; analyzing archive contents...
Moving overrides-2.0-py3.6.egg to /usr/local/lib/python3.6/dist-packages
Adding overrides 2.0 to easy-install.pth file
Installed /usr/local/lib/python3.6/dist-packages/overrides-2.0-py3.6.egg
Searching for numpy==1.17.2
Best match: numpy 1.17.2
Adding numpy 1.17.2 to easy-install.pth file
Installing f2py script to /usr/local/bin
Installing f2py3 script to /usr/local/bin
Installing f2py3.6 script to /usr/local/bin
Using /tensorflow-2.0.0-rc2/python3.6
Searching for h5py==2.10.0
Best match: h5py 2.10.0
Adding h5py 2.10.0 to easy-install.pth file
Using /tensorflow-2.0.0-rc2/python3.6
Searching for torch==1.2.0
Best match: torch 1.2.0
Adding torch 1.2.0 to easy-install.pth file
Installing convert-caffe2-to-onnx script to /usr/local/bin
Installing convert-onnx-to-caffe2 script to /usr/local/bin
Using /usr/local/lib/python3.6/dist-packages
Searching for six==1.12.0
Best match: six 1.12.0
Adding six 1.12.0 to easy-install.pth file
Using /usr/local/lib/python3.6/dist-packages
Finished processing dependencies for elmoformanylangs==0.0.2
The path in e = Embedder('./zhs.model/') is the absolute path, it is not the relative path.
e.g. '/content/drive/Colab Notebooks/../zhs.model/'
Related
I tried to install tensornets in my ubuntu anaconda environment but the message bellow appears.
I installed:
numpy 1.17.0,
tensoflow 1.14.0,
pandas 1.1.5,
opencv,
keras,
cmake,
dlib
$ pip install tensornets
collecting tensornets
Using cached tensornets-0.4.6.tar.gz (651 kB)
Installing build dependencies ... done
WARNING: Missing build requirements in pyproject.toml for tensornets from https://files.pythonhosted.org/packages/71/22/2c9402bbf142b94dc39d8a3c9884690ae87706a8bc1453d6cf0630525173/tensornets-0.4.6.tar.gz#sha256=e1095082b45a06168d56450d8c8fa49780d8aef8d4d1fcc64efceadb743f9ceb.
WARNING: The project does not specify a build backend, and pip cannot fall back to setuptools without 'wheel'.
Getting requirements to build wheel ... done
Installing backend dependencies ... done
Preparing wheel metadata ... done
Building wheels for collected packages: tensornets
Building wheel for tensornets (PEP 517) ... error
ERROR: Command errored out with exit status 1:
command: /home/mario/miniconda3/envs/VARVO_LINUX/bin/python /home/mario/miniconda3/envs/VARVO_LINUX/lib/python3.6/site-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmp2bm7gwnh
cwd: /tmp/pip-install-vupow4g5/tensornets_24fc2060cce2460b9b6417949ee1e6b6
Complete output (86 lines):
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.6
creating build/lib.linux-x86_64-3.6/tensornets
copying tensornets/utils.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/unet.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/inceptions.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/densenets.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/preprocess.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/capsulenets.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/tnets.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/resnets.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/nasnets.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/init.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/middles.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/version_utils.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/squeezenets.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/vggs.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/darknets.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/zf.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/layers.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/pretrained.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/mobilenets.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/ops.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/detections.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/efficientnets.py -> build/lib.linux-x86_64-3.6/tensornets
copying tensornets/wavenets.py -> build/lib.linux-x86_64-3.6/tensornets
creating build/lib.linux-x86_64-3.6/tensornets/datasets
copying tensornets/datasets/init.py -> build/lib.linux-x86_64-3.6/tensornets/datasets
copying tensornets/datasets/imagenet.py -> build/lib.linux-x86_64-3.6/tensornets/datasets
copying tensornets/datasets/voc.py -> build/lib.linux-x86_64-3.6/tensornets/datasets
copying tensornets/datasets/coco.py -> build/lib.linux-x86_64-3.6/tensornets/datasets
creating build/lib.linux-x86_64-3.6/tensornets/contrib_framework
copying tensornets/contrib_framework/init.py -> build/lib.linux-x86_64-3.6/tensornets/contrib_framework
copying tensornets/contrib_framework/arg_scope.py -> build/lib.linux-x86_64-3.6/tensornets/contrib_framework
copying tensornets/contrib_framework/variables.py -> build/lib.linux-x86_64-3.6/tensornets/contrib_framework
creating build/lib.linux-x86_64-3.6/tensornets/contrib_layers
copying tensornets/contrib_layers/utils.py -> build/lib.linux-x86_64-3.6/tensornets/contrib_layers
copying tensornets/contrib_layers/init.py -> build/lib.linux-x86_64-3.6/tensornets/contrib_layers
copying tensornets/contrib_layers/initializers.py -> build/lib.linux-x86_64-3.6/tensornets/contrib_layers
copying tensornets/contrib_layers/normalization.py -> build/lib.linux-x86_64-3.6/tensornets/contrib_layers
copying tensornets/contrib_layers/optimizers.py -> build/lib.linux-x86_64-3.6/tensornets/contrib_layers
copying tensornets/contrib_layers/layers.py -> build/lib.linux-x86_64-3.6/tensornets/contrib_layers
copying tensornets/contrib_layers/regularizers.py -> build/lib.linux-x86_64-3.6/tensornets/contrib_layers
copying tensornets/contrib_layers/summaries.py -> build/lib.linux-x86_64-3.6/tensornets/contrib_layers
copying tensornets/contrib_layers/rev_block_lib.py -> build/lib.linux-x86_64-3.6/tensornets/contrib_layers
creating build/lib.linux-x86_64-3.6/tensornets/references
copying tensornets/references/init.py -> build/lib.linux-x86_64-3.6/tensornets/references
copying tensornets/references/rcnns.py -> build/lib.linux-x86_64-3.6/tensornets/references
copying tensornets/references/yolo_utils.py -> build/lib.linux-x86_64-3.6/tensornets/references
copying tensornets/references/rpn_utils.py -> build/lib.linux-x86_64-3.6/tensornets/references
copying tensornets/references/yolos.py -> build/lib.linux-x86_64-3.6/tensornets/references
creating build/lib.linux-x86_64-3.6/tensornets/references/darkflow_utils
copying tensornets/references/darkflow_utils/init.py -> build/lib.linux-x86_64-3.6/tensornets/references/darkflow_utils
copying tensornets/references/darkflow_utils/box.py -> build/lib.linux-x86_64-3.6/tensornets/references/darkflow_utils
running egg_info
writing tensornets.egg-info/PKG-INFO
writing dependency_links to tensornets.egg-info/dependency_links.txt
writing top-level names to tensornets.egg-info/top_level.txt
reading manifest file 'tensornets.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'tensornets.egg-info/SOURCES.txt'
copying tensornets/datasets/coco.names -> build/lib.linux-x86_64-3.6/tensornets/datasets
copying tensornets/datasets/voc.names -> build/lib.linux-x86_64-3.6/tensornets/datasets
copying tensornets/references/coco.names -> build/lib.linux-x86_64-3.6/tensornets/references
copying tensornets/references/voc.names -> build/lib.linux-x86_64-3.6/tensornets/references
copying tensornets/references/darkflow_utils/init.pyc -> build/lib.linux-x86_64-3.6/tensornets/references/darkflow_utils
copying tensornets/references/darkflow_utils/box.pyc -> build/lib.linux-x86_64-3.6/tensornets/references/darkflow_utils
copying tensornets/references/darkflow_utils/get_boxes.c -> build/lib.linux-x86_64-3.6/tensornets/references/darkflow_utils
copying tensornets/references/darkflow_utils/get_boxes.pyx -> build/lib.linux-x86_64-3.6/tensornets/references/darkflow_utils
copying tensornets/references/darkflow_utils/get_boxes.so -> build/lib.linux-x86_64-3.6/tensornets/references/darkflow_utils
copying tensornets/references/darkflow_utils/nms.c -> build/lib.linux-x86_64-3.6/tensornets/references/darkflow_utils
copying tensornets/references/darkflow_utils/nms.pxd -> build/lib.linux-x86_64-3.6/tensornets/references/darkflow_utils
copying tensornets/references/darkflow_utils/nms.pyx -> build/lib.linux-x86_64-3.6/tensornets/references/darkflow_utils
copying tensornets/references/darkflow_utils/nms.so -> build/lib.linux-x86_64-3.6/tensornets/references/darkflow_utils
running build_ext
building 'tensornets.references.darkflow_utils.nms' extension
creating build/temp.linux-x86_64-3.6
creating build/temp.linux-x86_64-3.6/tensornets
creating build/temp.linux-x86_64-3.6/tensornets/references
creating build/temp.linux-x86_64-3.6/tensornets/references/darkflow_utils
gcc -pthread -B /home/mario/miniconda3/envs/VARVO_LINUX/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/tmp/pip-build-env-5o3ttz/overlay/lib/python3.6/site-packages/numpy/core/include -I/home/mario/miniconda3/envs/VARVO_LINUX/include/python3.6m -c tensornets/references/darkflow_utils/nms.c -o build/temp.linux-x86_64-3.6/tensornets/references/darkflow_utils/nms.o
error: command 'gcc' failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for tensornets
Failed to build tensornets
ERROR: Could not build wheels for tensornets which use PEP 517 and cannot be installed directly
The problem was in the gcc compiler
I followed this tutorial: https://linuxize.com/post/how-to-install-gcc-compiler-on-ubuntu-18-04/
In summary:
1.- Update
$sudo apt update
2.- Install build-essential
$sudo apt install build-essential
2.1.- Optional (documentation)
$sudo apt-get install manpages-dev
3.- Verify GCC compiler installation
$gcc --version
So, I was trying to install PyAutoGui, when I got an error. I found that Pillow is the problem. I get an error when installing, how do I resolve this and successfully install Pillow? When executing in a cmd:
C:\Python34\Scripts\pip install Pillow
I receive the following log:
copying PIL\IcnsImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\IcoImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\Image.py -> build\lib.win-amd64-3.4\PIL
copying PIL\ImageChops.py -> build\lib.win-amd64-3.4\PIL
copying PIL\ImageCms.py -> build\lib.win-amd64-3.4\PIL
copying PIL\ImageColor.py -> build\lib.win-amd64-3.4\PIL
copying PIL\ImageDraw.py -> build\lib.win-amd64-3.4\PIL
copying PIL\ImageDraw2.py -> build\lib.win-amd64-3.4\PIL
copying PIL\ImageEnhance.py -> build\lib.win-amd64-3.4\PIL
copying PIL\ImageFile.py -> build\lib.win-amd64-3.4\PIL
copying PIL\ImageFilter.py -> build\lib.win-amd64-3.4\PIL
copying PIL\ImageFont.py -> build\lib.win-amd64-3.4\PIL
copying PIL\ImageGrab.py -> build\lib.win-amd64-3.4\PIL
copying PIL\ImageMath.py -> build\lib.win-amd64-3.4\PIL
copying PIL\ImageMode.py -> build\lib.win-amd64-3.4\PIL
copying PIL\ImageMorph.py -> build\lib.win-amd64-3.4\PIL
copying PIL\ImageOps.py -> build\lib.win-amd64-3.4\PIL
copying PIL\ImagePalette.py -> build\lib.win-amd64-3.4\PIL
copying PIL\ImagePath.py -> build\lib.win-amd64-3.4\PIL
copying PIL\ImageQt.py -> build\lib.win-amd64-3.4\PIL
copying PIL\ImageSequence.py -> build\lib.win-amd64-3.4\PIL
copying PIL\ImageShow.py -> build\lib.win-amd64-3.4\PIL
copying PIL\ImageStat.py -> build\lib.win-amd64-3.4\PIL
copying PIL\ImageTk.py -> build\lib.win-amd64-3.4\PIL
copying PIL\ImageTransform.py -> build\lib.win-amd64-3.4\PIL
copying PIL\ImageWin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\ImImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\ImtImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\IptcImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\Jpeg2KImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\JpegImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\JpegPresets.py -> build\lib.win-amd64-3.4\PIL
copying PIL\McIdasImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\MicImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\MpegImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\MpoImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\MspImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\OleFileIO.py -> build\lib.win-amd64-3.4\PIL
copying PIL\PaletteFile.py -> build\lib.win-amd64-3.4\PIL
copying PIL\PalmImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\PcdImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\PcfFontFile.py -> build\lib.win-amd64-3.4\PIL
copying PIL\PcxImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\PdfImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\PixarImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\PngImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\PpmImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\PsdImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\PSDraw.py -> build\lib.win-amd64-3.4\PIL
copying PIL\PyAccess.py -> build\lib.win-amd64-3.4\PIL
copying PIL\SgiImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\SpiderImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\SunImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\TarIO.py -> build\lib.win-amd64-3.4\PIL
copying PIL\TgaImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\TiffImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\TiffTags.py -> build\lib.win-amd64-3.4\PIL
copying PIL\WalImageFile.py -> build\lib.win-amd64-3.4\PIL
copying PIL\WebPImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\WmfImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\XbmImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\XpmImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\XVThumbImagePlugin.py -> build\lib.win-amd64-3.4\PIL
copying PIL\_binary.py -> build\lib.win-amd64-3.4\PIL
copying PIL\_tkinter_finder.py -> build\lib.win-amd64-3.4\PIL
copying PIL\_util.py -> build\lib.win-amd64-3.4\PIL
copying PIL\__init__.py -> build\lib.win-amd64-3.4\PIL
running egg_info
writing top-level names to Pillow.egg-info\top_level.txt
writing requirements to Pillow.egg-info\requires.txt
writing dependency_links to Pillow.egg-info\dependency_links.txt
writing Pillow.egg-info\PKG-INFO
warning: manifest_maker: standard file '-c' not found
reading manifest file 'Pillow.egg-info\SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.sh'
no previously-included directories found matching 'docs\_static'
warning: no previously-included files found matching '.coveragerc'
warning: no previously-included files found matching '.editorconfig'
warning: no previously-included files found matching '.landscape.yaml'
warning: no previously-included files found matching 'appveyor.yml'
warning: no previously-included files found matching 'build_children.sh'
warning: no previously-included files found matching 'tox.ini'
warning: no previously-included files matching '.git*' found anywhere in distribution
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.so' found anywhere in distribution
writing manifest file 'Pillow.egg-info\SOURCES.txt'
running build_ext
The headers or library files could not be found for zlib,
a required dependency when compiling Pillow from source.
Please see the install instructions at:
http://pillow.readthedocs.io/en/latest/installation.html
Traceback (most recent call last):
File "C:\Users\User\AppData\Local\Temp\pip_build_User\Pillow\setup.py", line 779, in <module>
zip_safe=not debug_build(), )
File "C:\Python34\lib\distutils\core.py", line 148, in setup
dist.run_commands()
File "C:\Python34\lib\distutils\dist.py", line 955, in run_commands
self.run_command(cmd)
File "C:\Python34\lib\distutils\dist.py", line 974, in run_command
cmd_obj.run()
File "C:\Python34\lib\site-packages\setuptools\command\install.py", line 54, in run
return _install.run(self)
File "C:\Python34\lib\distutils\command\install.py", line 554, in run
self.run_command('build')
File "C:\Python34\lib\distutils\cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "C:\Python34\lib\distutils\dist.py", line 974, in run_command
cmd_obj.run()
File "C:\Python34\lib\distutils\command\build.py", line 126, in run
self.run_command(cmd_name)
File "C:\Python34\lib\distutils\cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "C:\Python34\lib\distutils\dist.py", line 974, in run_command
cmd_obj.run()
File "C:\Python34\lib\distutils\command\build_ext.py", line 348, in run
self.build_extensions()
File "C:\Users\User\AppData\Local\Temp\pip_build_User\Pillow\setup.py", line 549, in build_extensions
raise RequiredDependencyException(f)
__main__.RequiredDependencyException: zlib
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "C:\Users\User\AppData\Local\Temp\pip_build_User\Pillow\setup.py", line 791, in <module>
raise RequiredDependencyException(msg)
__main__.RequiredDependencyException:
The headers or library files could not be found for zlib,
a required dependency when compiling Pillow from source.
Please see the install instructions at:
http://pillow.readthedocs.io/en/latest/installation.html
----------------------------------------
Cleaning up...
Command C:\Python34\python.exe -c "import setuptools, tokenize;__file__='C:\\Users\\User\\AppData\\Local\\Temp\\pip_build_User\\Pillow\\setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record C:\Users\User\AppData\Local\Temp\pip-r710478a-record\install-record.txt --single-version-externally-managed --compile failed with error code 1 in C:\Users\User\AppData\Local\Temp\pip_build_User\Pillow
Storing debug log for failure in C:\Users\User\pip\pip.log
C:\Users\User>
Just reinstalled everything. Works now.
when trying to execute this command:
scrapyd-deploy test -p project=myProject
I get the following error:
Traceback (most recent call last):
File "/usr/bin/scrapyd-deploy", line 269, in <module>
main()
File "/usr/bin/scrapyd-deploy", line 95, in main
egg, tmpdir = _build_egg()
File "/usr/bin/scrapyd-deploy", line 236, in _build_egg
retry_on_eintr(check_call, [sys.executable, 'setup.py', 'clean', '-a', 'bdist_egg', '-d', d], stdout=o, stderr=e)
File "/usr/local/lib/python2.7/dist-packages/scrapy/utils/python.py", line 331, in retry_on_eintr
return function(*args, **kw)
File "/usr/lib/python2.7/subprocess.py", line 540, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['/usr/bin/python', 'setup.py', 'clean', '-a', 'bdist_egg', '-d', '/tmp/scrapydeploy-wV3h4k']' returned non-zero exit status 1
I have installed scrapyd-deploy and scrapyd-client, as well as setuptools and scrapyd of course.
This command:
python setup.py clean -a bdist_egg
produces the output:
running clean
removing 'build/lib.linux-x86_64-2.7' (and everything under it)
removing 'build/bdist.linux-x86_64' (and everything under it)
'build/scripts-2.7' does not exist -- can't clean it
removing 'build'
running bdist_egg
running egg_info
writing NOAA.egg-info/PKG-INFO
writing top-level names to NOAA.egg-info/top_level.txt
writing dependency_links to NOAA.egg-info/dependency_links.txt
writing entry points to NOAA.egg-info/entry_points.txt
reading manifest file 'NOAA.egg-info/SOURCES.txt'
writing manifest file 'NOAA.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
running build_py
creating build
creating build/lib.linux-x86_64-2.7
creating build/lib.linux-x86_64-2.7/NOAA
copying NOAA/pipelines.py -> build/lib.linux-x86_64-2.7/NOAA
copying NOAA/__init__.py -> build/lib.linux-x86_64-2.7/NOAA
copying NOAA/noaa-template.py -> build/lib.linux-x86_64-2.7/NOAA
copying NOAA/noaa-original.py -> build/lib.linux-x86_64-2.7/NOAA
copying NOAA/settings-template.py -> build/lib.linux-x86_64-2.7/NOAA
copying NOAA/tika-python.py -> build/lib.linux-x86_64-2.7/NOAA
copying NOAA/settings.py -> build/lib.linux-x86_64-2.7/NOAA
copying NOAA/mysqldb.py -> build/lib.linux-x86_64-2.7/NOAA
copying NOAA/noaa.py -> build/lib.linux-x86_64-2.7/NOAA
copying NOAA/items.py -> build/lib.linux-x86_64-2.7/NOAA
creating build/lib.linux-x86_64-2.7/NOAA/spiders
copying NOAA/spiders/spider1.py -> build/lib.linux-x86_64-2.7/NOAA/spiders
copying NOAA/spiders/spider2.py -> build/lib.linux-x86_64-2.7/NOAA/spiders
(output omitted... There are a lot of spiders)
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/egg
creating build/bdist.linux-x86_64/egg/NOAA
copying build/lib.linux-x86_64-2.7/NOAA/pipelines.py -> build/bdist.linux-x86_64/egg/NOAA
creating build/bdist.linux-x86_64/egg/NOAA/spiders
copying build/lib.linux-x86_64-2.7/NOAA/spiders/spider1.py -> build/bdist.linux-x86_64/egg/NOAA/spiders
copying build/lib.linux-x86_64-2.7/NOAA/spiders/spider2.py -> build/bdist.linux-x86_64/egg/NOAA/spiders
(output omitted... There are a lot of spiders)
byte-compiling build/bdist.linux-x86_64/egg/NOAA/pipelines.py to pipelines.pyc
byte-compiling build/bdist.linux-x86_64/egg/NOAA/spiders/spider1.py to spider1.pyc
byte-compiling build/bdist.linux-x86_64/egg/NOAA/spiders/spider2.py to spider2.pyc
(output omitted... There are a lot of spiders)
byte-compiling build/bdist.linux-x86_64/egg/NOAA/__init__.py to __init__.pyc
byte-compiling build/bdist.linux-x86_64/egg/NOAA/noaa-template.py to noaa-template.pyc
byte-compiling build/bdist.linux-x86_64/egg/NOAA/noaa-original.py to noaa-original.pyc
byte-compiling build/bdist.linux-x86_64/egg/NOAA/settings-template.py to settings-template.pyc
byte-compiling build/bdist.linux-x86_64/egg/NOAA/tika-python.py to tika-python.pyc
byte-compiling build/bdist.linux-x86_64/egg/NOAA/settings.py to settings.pyc
byte-compiling build/bdist.linux-x86_64/egg/NOAA/mysqldb.py to mysqldb.pyc
byte-compiling build/bdist.linux-x86_64/egg/NOAA/noaa.py to noaa.pyc
byte-compiling build/bdist.linux-x86_64/egg/NOAA/items.py to items.pyc
creating build/bdist.linux-x86_64/egg/EGG-INFO
copying NOAA.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO
copying NOAA.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying NOAA.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying NOAA.egg-info/entry_points.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying NOAA.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
zip_safe flag not set; analyzing archive contents...
creating 'dist/NOAA-1.0-py2.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it
removing 'build/bdist.linux-x86_64/egg' (and everything under it)
When trying to schedule a spider with this command:
curl http://localhost:6800/schedule.json -d project=myproject -d spider=spider1.py
I get this error:
Traceback (most recent call last):
File "/usr/local/lib/python2.7/dist-packages/twisted/web
req.requestReceived(command, path, version)
File "/usr/local/lib/python2.7/dist-packages/twisted/web
self.process()
File "/usr/local/lib/python2.7/dist-packages/twisted/web
self.render(resrc)
File "/usr/local/lib/python2.7/dist-packages/twisted/web
body = resrc.render(self)
--- <exception caught here> ---
File "/usr/local/lib/python2.7/dist-packages/scrapyd/web
return JsonResource.render(self, txrequest)
File "/usr/local/lib/python2.7/dist-packages/scrapyd/uti
r = resource.Resource.render(self, txrequest)
File "/usr/local/lib/python2.7/dist-packages/twisted/web
return m(request)
File "/usr/local/lib/python2.7/dist-packages/scrapyd/web
spiders = get_spider_list(project)
File "/usr/local/lib/python2.7/dist-packages/scrapyd/uti
runner = Config().get('runner')
File "/usr/local/lib/python2.7/dist-packages/scrapyd/con
self.cp.read(sources)
File "/usr/lib/python2.7/ConfigParser.py", line 305, in
self._read(fp, filename)
File "/usr/lib/python2.7/ConfigParser.py", line 512, in
raise MissingSectionHeaderError(fpname, lineno, line)
ConfigParser.MissingSectionHeaderError: File contains no s
file: /etc/scrapyd/conf.d/twistd.pid, line: 1
'24262'
Funny thing is, if I add what I believe to be a section header ([section header])to that twistd.pid file, I get an error saying that it contains something other than a numerical value of the pid of twistd.
Are these issues interrelated?
I was getting the same error .. what worked for me was using the command with sudo.
The error might be because the command is not getting the proper permissions.
sudo scrapyd-deploy test -p project=myProject
So I'm trying to install lxml on my machine, and I can't seem to get it to work.
I've got Windows 8.1 64-bit and python 3.5
I've used both
pip install lxml
and
easy_install lxml
I keep getting this error message:
C:\Users\jgarber\Downloads>pip install readability-lxml --upgrade Requirement already up-to-date: readability-lxml in c:\python\lib\site-packages\ readability_lxml-0.6.2-py3.5.egg Requirement already up-to-date: chardet in c:\python\lib\site-packages (from rea dability-lxml) Collecting lxml (from readability-lxml) Using cached lxml-3.6.4.tar.gz Requirement already up-to-date: cssselect in c:\python\lib\site-packages\csssele ct-1.0.0-py3.5.egg (from readability-lxml) Installing collected packages: lxml Running setup.py install for lxml ... error
Complete output from command c:\python\python.exe -u -c "import setuptools, tokenize;__file__='C:\\Users\\jgarber\\AppData\\Local\\Temp\\pip-build-bypbiu8j\ \lxml\\setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().r eplace('\r\n', '\n'), __file__, 'exec'))" install --record C:\Users\jgarber\AppD ata\Local\Temp\pip-j8svsde4-record\install-record.txt
--single-version-externall y-managed --compile:
Building lxml version 3.6.4.
Building without Cython.
ERROR: b"'xslt-config' is not recognized as an internal or external command, \r\noperable program or batch file.\r\n"
** make sure the development packages of libxml2 and libxslt are installed *
*
Using build configuration of libxslt
running install
running build
running build_py
creating build
creating build\lib.win32-3.5
creating build\lib.win32-3.5\lxml
copying src\lxml\builder.py -> build\lib.win32-3.5\lxml
copying src\lxml\cssselect.py -> build\lib.win32-3.5\lxml
copying src\lxml\doctestcompare.py -> build\lib.win32-3.5\lxml
copying src\lxml\ElementInclude.py -> build\lib.win32-3.5\lxml
copying src\lxml\pyclasslookup.py -> build\lib.win32-3.5\lxml
copying src\lxml\sax.py -> build\lib.win32-3.5\lxml
copying src\lxml\usedoctest.py -> build\lib.win32-3.5\lxml
copying src\lxml\_elementpath.py -> build\lib.win32-3.5\lxml
copying src\lxml\__init__.py -> build\lib.win32-3.5\lxml
creating build\lib.win32-3.5\lxml\includes
copying src\lxml\includes\__init__.py -> build\lib.win32-3.5\lxml\includes
creating build\lib.win32-3.5\lxml\html
copying src\lxml\html\builder.py -> build\lib.win32-3.5\lxml\html
copying src\lxml\html\clean.py -> build\lib.win32-3.5\lxml\html
copying src\lxml\html\defs.py -> build\lib.win32-3.5\lxml\html
copying src\lxml\html\diff.py -> build\lib.win32-3.5\lxml\html
copying src\lxml\html\ElementSoup.py -> build\lib.win32-3.5\lxml\html
copying src\lxml\html\formfill.py -> build\lib.win32-3.5\lxml\html
copying src\lxml\html\html5parser.py -> build\lib.win32-3.5\lxml\html
copying src\lxml\html\soupparser.py -> build\lib.win32-3.5\lxml\html
copying src\lxml\html\usedoctest.py -> build\lib.win32-3.5\lxml\html
copying src\lxml\html\_diffcommand.py -> build\lib.win32-3.5\lxml\html
copying src\lxml\html\_html5builder.py -> build\lib.win32-3.5\lxml\html
copying src\lxml\html\_setmixin.py -> build\lib.win32-3.5\lxml\html
copying src\lxml\html\__init__.py -> build\lib.win32-3.5\lxml\html
creating build\lib.win32-3.5\lxml\isoschematron
copying src\lxml\isoschematron\__init__.py -> build\lib.win32-3.5\lxml\isosc hematron
copying src\lxml\lxml.etree.h -> build\lib.win32-3.5\lxml
copying src\lxml\lxml.etree_api.h -> build\lib.win32-3.5\lxml
copying src\lxml\includes\c14n.pxd -> build\lib.win32-3.5\lxml\includes
copying src\lxml\includes\config.pxd -> build\lib.win32-3.5\lxml\includes
copying src\lxml\includes\dtdvalid.pxd -> build\lib.win32-3.5\lxml\includes
copying src\lxml\includes\etreepublic.pxd -> build\lib.win32-3.5\lxml\includ es
copying src\lxml\includes\htmlparser.pxd -> build\lib.win32-3.5\lxml\include s
copying src\lxml\includes\relaxng.pxd -> build\lib.win32-3.5\lxml\includes
copying src\lxml\includes\schematron.pxd -> build\lib.win32-3.5\lxml\include s
copying src\lxml\includes\tree.pxd -> build\lib.win32-3.5\lxml\includes
copying src\lxml\includes\uri.pxd -> build\lib.win32-3.5\lxml\includes
copying src\lxml\includes\xinclude.pxd -> build\lib.win32-3.5\lxml\includes
copying src\lxml\includes\xmlerror.pxd -> build\lib.win32-3.5\lxml\includes
copying src\lxml\includes\xmlparser.pxd -> build\lib.win32-3.5\lxml\includes
copying src\lxml\includes\xmlschema.pxd -> build\lib.win32-3.5\lxml\includes
copying src\lxml\includes\xpath.pxd -> build\lib.win32-3.5\lxml\includes
copying src\lxml\includes\xslt.pxd -> build\lib.win32-3.5\lxml\includes
copying src\lxml\includes\etree_defs.h -> build\lib.win32-3.5\lxml\includes
copying src\lxml\includes\lxml-version.h -> build\lib.win32-3.5\lxml\include s
creating build\lib.win32-3.5\lxml\isoschematron\resources
creating build\lib.win32-3.5\lxml\isoschematron\resources\rng
copying src\lxml\isoschematron\resources\rng\iso-schematron.rng -> build\lib .win32-3.5\lxml\isoschematron\resources\rng
creating build\lib.win32-3.5\lxml\isoschematron\resources\xsl
copying src\lxml\isoschematron\resources\xsl\RNG2Schtrn.xsl -> build\lib.win 32-3.5\lxml\isoschematron\resources\xsl
copying src\lxml\isoschematron\resources\xsl\XSD2Schtrn.xsl -> build\lib.win 32-3.5\lxml\isoschematron\resources\xsl
creating build\lib.win32-3.5\lxml\isoschematron\resources\xsl\iso-schematron
-xslt1
copying src\lxml\isoschematron\resources\xsl\iso-schematron-xslt1\iso_abstra ct_expand.xsl -> build\lib.win32-3.5\lxml\isoschematron\resources\xsl\iso-schema tron-xslt1
copying src\lxml\isoschematron\resources\xsl\iso-schematron-xslt1\iso_dsdl_i nclude.xsl -> build\lib.win32-3.5\lxml\isoschematron\resources\xsl\iso-schematro n-xslt1
copying src\lxml\isoschematron\resources\xsl\iso-schematron-xslt1\iso_schema tron_message.xsl -> build\lib.win32-3.5\lxml\isoschematron\resources\xsl\iso-sch ematron-xslt1
copying src\lxml\isoschematron\resources\xsl\iso-schematron-xslt1\iso_schema tron_skeleton_for_xslt1.xsl -> build\lib.win32-3.5\lxml\isoschematron\resources\ xsl\iso-schematron-xslt1
copying src\lxml\isoschematron\resources\xsl\iso-schematron-xslt1\iso_svrl_f or_xslt1.xsl -> build\lib.win32-3.5\lxml\isoschematron\resources\xsl\iso-schemat ron-xslt1
copying src\lxml\isoschematron\resources\xsl\iso-schematron-xslt1\readme.txt
-> build\lib.win32-3.5\lxml\isoschematron\resources\xsl\iso-schematron-xslt1
running build_ext
building 'lxml.etree' extension
creating build\temp.win32-3.5
creating build\temp.win32-3.5\Release
creating build\temp.win32-3.5\Release\src
creating build\temp.win32-3.5\Release\src\lxml
C:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\BIN\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MD -Isrc\lxml\includes
-Ic:\python\include -Ic:\python\in clude "-IC:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\INCLUDE" "-IC:\P rogram Files (x86)\Windows Kits\10\include\10.0.10240.0\ucrt" "-IC:\Program File s (x86)\Windows Kits\8.1\include\shared" "-IC:\Program Files (x86)\Windows Kits\
8.1\include\um" "-IC:\Program Files (x86)\Windows Kits\8.1\include\winrt" /Tcsrc \lxml\lxml.etree.c /Fobuild\temp.win32-3.5\Release\src\lxml\lxml.etree.obj -w
cl : Command line warning D9025 : overriding '/W3' with '/w'
lxml.etree.c
src\lxml\includes\etree_defs.h(14): fatal error C1083: Cannot open include f ile: 'libxml/xmlversion.h': No such file or directory
Compile failed: command 'C:\\Program Files (x86)\\Microsoft Visual Studio 14 .0\\VC\\BIN\\cl.exe' failed with exit status 2
creating Users
creating Users\jgarber
creating Users\jgarber\AppData
creating Users\jgarber\AppData\Local
creating Users\jgarber\AppData\Local\Temp
C:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\BIN\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MD -I/usr/include/libxml2 "-IC:\Program Files (x86)\Micro soft Visual Studio 14.0\VC\INCLUDE" "-IC:\Program Files (x86)\Windows Kits\10\in clude\10.0.10240.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\8.1\include\shar ed" "-IC:\Program Files (x86)\Windows Kits\8.1\include\um" "-IC:\Program Files ( x86)\Windows Kits\8.1\include\winrt" /TcC:\Users\jgarber\AppData\Local\Temp\xmlX PathInit_qrahzea.c /FoUsers\jgarber\AppData\Local\Temp\xmlXPathInit_qrahzea.obj
xmlXPathInit_qrahzea.c
C:\Users\jgarber\AppData\Local\Temp\xmlXPathInit_qrahzea.c(1): fatal error C 1083: Cannot open include file: 'libxml/xpath.h': No such file or directory
****************************************************************************
*****
Could not find function xmlCheckVersion in library libxml2. Is libxml2 insta lled?
****************************************************************************
*****
error: command 'C:\\Program Files (x86)\\Microsoft Visual Studio 14.0\\VC\\B IN\\cl.exe' failed with exit status 2
---------------------------------------- Command "c:\python\python.exe -u -c "import setuptools, tokenize;__file__='C:\\U sers\\jgarber\\AppData\\Local\\Temp\\pip-build-bypbiu8j\\lxml\\setup.py';exec(co mpile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __ file__, 'exec'))" install --record C:\Users\jgarber\AppData\Local\Temp\pip-j8svs de4-record\install-record.txt --single-version-externally-managed
--compile" fai led with error code 1 in C:\Users\jgarber\AppData\Local\Temp\pip-build-bypbiu8j\ lxml\
I have also tried downloading the .whl from http://www.lfd.uci.edu/~gohlke/pythonlibs/#lxml and attempted to manually install the wheel but receive this error message:
C:\Users\jgarber\Downloads>pip install lxml-3.6.4-cp35-cp35m-win_amd64.whl
lxml-3.6.4-cp35-cp35m-win_amd64.whl is not a supported wheel on this platform.
even with the python -m pip install statement.
At this point I'm not sure what I'm missing, any help would be greatly appreciated.
By default, Python will install as 32-bit on Windows, even on 64-bit systems. Therefore, to match this, you must select the wheel for 32-bit systems.
You can verify that your Python interpreter is 32-bit, because the REPL will look like this when starting:
Python 3.5.2 (v3.5.2:4def2a2901a5, Jun 25 2016, 22:01:18) [MSC v.1900 32 bit (Intel)] on win32
You should pick the lxml-3.6.4-cp35-cp35m-win32.whl package for Python 3.5 on Windows (unless you explicitly selected 64-bit when downloading Python) which should solve your issue.
They fixed this issue as of lxml version 4.2.5.
If you are still getting this issue, see if your requirements file specifies a specific version of lxml. If so, you should be able to fix the problem by updating the specified version to 4.2.5 or above.
I can't manage to install biom format using pip install biom-format.
This is the error I get.
N85566:~ smitra$ pip install biom-format
Collecting biom-format
Using cached biom-format-2.1.5.tar.gz
Requirement already satisfied (use --upgrade to upgrade): click in /usr/local/lib/python2.7/site-packages (from biom-format)
Requirement already satisfied (use --upgrade to upgrade): numpy>=1.3.0 in /Library/Python/2.7/site-packages (from biom-format)
Requirement already satisfied (use --upgrade to upgrade): future>=0.14.3 in /usr/local/lib/python2.7/site-packages (from biom-format)
Collecting scipy>=0.13.0 (from biom-format)
Using cached scipy-0.17.0-cp27-none-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl
Collecting pyqi (from biom-format)
Building wheels for collected packages: biom-format
Running setup.py bdist_wheel for biom-format ... error
Complete output from command /usr/local/opt/python/bin/python2.7 -u -c "import setuptools, tokenize;__file__='/private/var/folders/w0/sg297rxj3738tghvhq3fhr5c0000gp/T/pip-build-TljllL/biom-format/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /var/folders/w0/sg297rxj3738tghvhq3fhr5c0000gp/T/tmpmTturCpip-wheel- --python-tag cp27:
running bdist_wheel
running build
running build_py
creating build
creating build/lib.macosx-10.10-x86_64-2.7
creating build/lib.macosx-10.10-x86_64-2.7/biom
copying biom/__init__.py -> build/lib.macosx-10.10-x86_64-2.7/biom
copying biom/err.py -> build/lib.macosx-10.10-x86_64-2.7/biom
copying biom/exception.py -> build/lib.macosx-10.10-x86_64-2.7/biom
copying biom/parse.py -> build/lib.macosx-10.10-x86_64-2.7/biom
copying biom/table.py -> build/lib.macosx-10.10-x86_64-2.7/biom
copying biom/util.py -> build/lib.macosx-10.10-x86_64-2.7/biom
creating build/lib.macosx-10.10-x86_64-2.7/tests
copying tests/__init__.py -> build/lib.macosx-10.10-x86_64-2.7/tests
copying tests/test_err.py -> build/lib.macosx-10.10-x86_64-2.7/tests
copying tests/test_parse.py -> build/lib.macosx-10.10-x86_64-2.7/tests
copying tests/test_table.py -> build/lib.macosx-10.10-x86_64-2.7/tests
copying tests/test_util.py -> build/lib.macosx-10.10-x86_64-2.7/tests
creating build/lib.macosx-10.10-x86_64-2.7/biom/cli
copying biom/cli/__init__.py -> build/lib.macosx-10.10-x86_64-2.7/biom/cli
copying biom/cli/installation_informer.py -> build/lib.macosx-10.10-x86_64-2.7/biom/cli
copying biom/cli/metadata_adder.py -> build/lib.macosx-10.10-x86_64-2.7/biom/cli
copying biom/cli/table_converter.py -> build/lib.macosx-10.10-x86_64-2.7/biom/cli
copying biom/cli/table_head.py -> build/lib.macosx-10.10-x86_64-2.7/biom/cli
copying biom/cli/table_normalizer.py -> build/lib.macosx-10.10-x86_64-2.7/biom/cli
copying biom/cli/table_subsetter.py -> build/lib.macosx-10.10-x86_64-2.7/biom/cli
copying biom/cli/table_summarizer.py -> build/lib.macosx-10.10-x86_64-2.7/biom/cli
copying biom/cli/table_validator.py -> build/lib.macosx-10.10-x86_64-2.7/biom/cli
copying biom/cli/uc_processor.py -> build/lib.macosx-10.10-x86_64-2.7/biom/cli
copying biom/cli/util.py -> build/lib.macosx-10.10-x86_64-2.7/biom/cli
creating build/lib.macosx-10.10-x86_64-2.7/tests/test_cli
copying tests/test_cli/__init__.py -> build/lib.macosx-10.10-x86_64-2.7/tests/test_cli
copying tests/test_cli/test_add_metadata.py -> build/lib.macosx-10.10-x86_64-2.7/tests/test_cli
copying tests/test_cli/test_show_install_info.py -> build/lib.macosx-10.10-x86_64-2.7/tests/test_cli
copying tests/test_cli/test_subset_table.py -> build/lib.macosx-10.10-x86_64-2.7/tests/test_cli
copying tests/test_cli/test_summarize_table.py -> build/lib.macosx-10.10-x86_64-2.7/tests/test_cli
copying tests/test_cli/test_table_converter.py -> build/lib.macosx-10.10-x86_64-2.7/tests/test_cli
copying tests/test_cli/test_table_normalizer.py -> build/lib.macosx-10.10-x86_64-2.7/tests/test_cli
copying tests/test_cli/test_uc_processor.py -> build/lib.macosx-10.10-x86_64-2.7/tests/test_cli
copying tests/test_cli/test_validate_table.py -> build/lib.macosx-10.10-x86_64-2.7/tests/test_cli
running egg_info
writing requirements to biom_format.egg-info/requires.txt
writing biom_format.egg-info/PKG-INFO
writing top-level names to biom_format.egg-info/top_level.txt
writing dependency_links to biom_format.egg-info/dependency_links.txt
writing entry points to biom_format.egg-info/entry_points.txt
warning: manifest_maker: standard file '-c' not found
reading manifest file 'biom_format.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
no previously-included directories found matching 'docs/_build'
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '*.pyo' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
writing manifest file 'biom_format.egg-info/SOURCES.txt'
copying biom/_filter.c -> build/lib.macosx-10.10-x86_64-2.7/biom
copying biom/_filter.pyx -> build/lib.macosx-10.10-x86_64-2.7/biom
copying biom/_subsample.c -> build/lib.macosx-10.10-x86_64-2.7/biom
copying biom/_subsample.pyx -> build/lib.macosx-10.10-x86_64-2.7/biom
copying biom/_transform.c -> build/lib.macosx-10.10-x86_64-2.7/biom
copying biom/_transform.pyx -> build/lib.macosx-10.10-x86_64-2.7/biom
running build_ext
building 'biom._filter' extension
creating build/temp.macosx-10.10-x86_64-2.7
creating build/temp.macosx-10.10-x86_64-2.7/biom
clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -arch x86_64 -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c biom/_filter.c -o build/temp.macosx-10.10-x86_64-2.7/biom/_filter.o
biom/_filter.c:258:10: fatal error: 'numpy/arrayobject.h' file not found
#include "numpy/arrayobject.h"
^
1 error generated.
error: command 'clang' failed with exit status 1
----------------------------------------
Failed building wheel for biom-format
Running setup.py clean for biom-format
Failed to build biom-format
Installing collected packages: scipy, pyqi, biom-format
Found existing installation: scipy 0.12.0
Uninstalling scipy-0.12.0:
Exception:
Traceback (most recent call last):
File "/usr/local/lib/python2.7/site-packages/pip/basecommand.py", line 209, in main
status = self.run(options, args)
File "/usr/local/lib/python2.7/site-packages/pip/commands/install.py", line 317, in run
prefix=options.prefix_path,
File "/usr/local/lib/python2.7/site-packages/pip/req/req_set.py", line 726, in install
requirement.uninstall(auto_confirm=True)
File "/usr/local/lib/python2.7/site-packages/pip/req/req_install.py", line 746, in uninstall
paths_to_remove.remove(auto_confirm)
File "/usr/local/lib/python2.7/site-packages/pip/req/req_uninstall.py", line 115, in remove
renames(path, new_path)
File "/usr/local/lib/python2.7/site-packages/pip/utils/__init__.py", line 267, in renames
shutil.move(old, new)
File "/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 300, in move
rmtree(src)
File "/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 252, in rmtree
onerror(os.remove, fullname, sys.exc_info())
File "/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 250, in rmtree
os.remove(fullname)
OSError: [Errno 13] Permission denied: '/Library/Python/2.7/site-packages/scipy-0.12.0-py2.7.egg-info/dependency_links.txt'
N85566:~ smitra$
============
Another matter,
I tried to update numpy, which seems worked..but still shows me the earlier version. This is what I did.
=========
N85566:~ smitra$ pip install numpy --upgrade
Collecting numpy
Downloading numpy-1.11.0-cp27-cp27m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl (3.9MB)
100% |████████████████████████████████| 3.9MB 347kB/s
Installing collected packages: numpy
Found existing installation: numpy 1.7.1
Uninstalling numpy-1.7.1:
Exception:
Traceback (most recent call last):
File "/usr/local/lib/python2.7/site-packages/pip/basecommand.py", line 209, in main
status = self.run(options, args)
File "/usr/local/lib/python2.7/site-packages/pip/commands/install.py", line 317, in run
prefix=options.prefix_path,
File "/usr/local/lib/python2.7/site-packages/pip/req/req_set.py", line 726, in install
requirement.uninstall(auto_confirm=True)
File "/usr/local/lib/python2.7/site-packages/pip/req/req_install.py", line 746, in uninstall
paths_to_remove.remove(auto_confirm)
File "/usr/local/lib/python2.7/site-packages/pip/req/req_uninstall.py", line 115, in remove
renames(path, new_path)
File "/usr/local/lib/python2.7/site-packages/pip/utils/__init__.py", line 267, in renames
shutil.move(old, new)
File "/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 300, in move
rmtree(src)
File "/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 252, in rmtree
onerror(os.remove, fullname, sys.exc_info())
File "/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 250, in rmtree
os.remove(fullname)
OSError: [Errno 13] Permission denied: '/Library/Python/2.7/site-packages/numpy-1.7.1-py2.7.egg-info/dependency_links.txt'
N85566:~ smitra$
N85566:~ smitra$ python -c "import numpy; print numpy.version.version"
1.7.1
N85566:~ smitra$
==========
Any problem with PATH might be??
Please help me to fix this issue. Thanks, Mitra
I also had the same problem.
try this command:
sudo pip install -Iv https://pypi.python.org/packages/source/b/biom-format/biom-format-1.3.0.tar.gz#md5=bd35f9b7e1c7daf244fe2dffb2777606
hope to be helpful.
Adrian