I am installing BOWTIE as below in amazonlinux:
wget https://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.2.4/bowtie2-2.2.4-source.zip
unzip bowtie2-2.2.4-source.zip
cd bowtie2-2.2.4
make
echo "BOWTIE installed successfully."
I am getting the below error when I issue the 'make' command:
/bin/sh: hostname: command not found
Can anyone help me to fix this issue
which: no hostname in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin)
bash-4.2# hostname
bash: hostname: command not found
You have to install
yum install bind-utils -y
Related
according to https://redis.io/docs/stack/get-started/install/linux/, I am trying to install redis-stack on my ubuntu machine with ppa:
curl -fsSL https://packages.redis.io/gpg | sudo gpg --dearmor -o /usr/share/keyrings/redis-archive-keyring.gpg
echo "deb [signed-by=/usr/share/keyrings/redis-archive-keyring.gpg] https://packages.redis.io/deb $(lsb_release -cs) main" | sudo tee /etc/apt/sources.list.d/redis.list
sudo apt-get update
sudo apt-get install redis-stack-server
However with error:
E: Unable to locate package redis-stack-server
So, I am trying to download linux binary file to machine, still error:
$ ./bin/redis-stack-server
Starting redis-stack-server, database path ./var/db/redis-stack
./bin/redis-server: error while loading shared libraries: libssl.so.1.0.0: cannot open shared object file: No such file or directory
I'm following the current crystal installation docs, my installation stops at the first moment and give the error:
gpg: connecting dirmngr at '/tmp/apt-key-gpghome.4GKHZljOFL/S.dirmngr' failed: IPC connect call failed
gpg: keyserver receive failed: No dirmngr
I've already installed dirmngr.
First of all, you need to remove crystal.list from sources directory to install from start manually.
sudo rm /etc/apt/sources.list.d/crystal.list
And then:
curl -s "https://keyserver.ubuntu.com/pks/lookup?op=get&search=0x09617FD37CC06B54" | sudo apt-key add -
echo "deb https://dist.crystal-lang.org/apt crystal main" > /etc/apt/sources.list.d/crystal.list
sudo apt-get update
sudo apt-get install crystal
I have searched many answers. But, none of them solved my issues.
I have tried to install homebrew via terminal, by using /usr/bin/ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)"
Following error received:
Attempt 1:
Donal-Mac-mini:~ mymac$ ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)"
==> This script will install:
/usr/local/bin/brew
/usr/local/share/doc/homebrew
/usr/local/share/man/man1/brew.1
/usr/local/share/zsh/site-functions/_brew
/usr/local/etc/bash_completion.d/brew
/usr/local/Homebrew
Press RETURN to continue or any other key to abort
==> Downloading and installing Homebrew...
ssh_exchange_identification: read: Operation timed out
fatal: Could not read from remote repository.
Please make sure you have the correct access rights
and the repository exists.
Failed during: git fetch origin master:refs/remotes/origin/master --tags --force
Donal-Mac-mini:~ mymac$
Attempt 2:
Donal-Mac-mini:~ mymac$ git clone https://github.com/Homebrew/homebrew.git
Cloning into 'homebrew'...
ssh_exchange_identification: read: Operation timed out
fatal: Could not read from remote repository.
Please make sure you have the correct access rights
and the repository exists.
Donal-Mac-mini:~ mymac$
Issue fixed with the help of these link.
By Adding, SSH keys to my GitHub account and tried to install Homebrew.
Successfully installed.
Following steps:
Generate Key to your GitHub Account:
ssh-keygen -t rsa -b 4096 -C "yourusername#github.com"
Password:
It will ask minimum 5 chars password
To Check PORT:
eval "$(ssh-agent -s)"
Add Generated Key to Git:
ssh-add -K ~/.ssh/id_rsa
Copy that Key:
pbcopy < ~/.ssh/id_rsa.pub
PASTE IN SSH KEYS under SETTINGS in YOUR GITHUB ACC:
Next in Terminal,
ssh -T git#github.com
Hi yourusername! You've successfully authenticated, but GitHub does not provide shell access.
Start to Install Homebrew.
I installed zabbix-sender but when execute zabbix-sender i get command not found.
[root#db1 zabbix]# yum info zabbix-sender
Loaded plugins: fastestmirror
Loading mirror speeds from cached hostfile
Installed Packages
Name : zabbix-sender
Arch : x86_64
Version : 3.4.6
Release : 1.el7
Size : 1.0 M
Repo : installed
From repo : _ftp
Summary : Zabbix Sender
URL : http://www.zabbix.com/
License : GPLv2+
Description : Zabbix sender command line utility
when i use thi command
[root#db2 zabbix]# zabbix_sender -z zabbix -s db2 -k mysql[Binlog_cache_disk_use] -o 2000 -vv
-bash: zabbix_sender: command not found
Why does this happen?
[root#db1 zabbix]# !r
rpm -lq zabbix-sender
/usr/bin/zabbix_sender
/usr/share/doc/zabbix-sender-3.4.6
/usr/share/doc/zabbix-sender-3.4.6/AUTHORS
/usr/share/doc/zabbix-sender-3.4.6/COPYING
/usr/share/doc/zabbix-sender-3.4.6/ChangeLog
/usr/share/doc/zabbix-sender-3.4.6/NEWS
/usr/share/doc/zabbix-sender-3.4.6/README
/usr/share/man/man1/zabbix_sender.1.gz
[root#db1 zabbix]# zabbix-sender -z zabbix -s db1 -k mysql[Uptime] -o 1540 -vv
-bash: zabbix-sender: command not found
[root#db1 zabbix]#
checked again
I understand why does this happen! I remove Zabbix-sender and install again. when using Zabbix-sender -z Zabbix -s db1 -k mysql[Uptime] -o 1540 -vv there is no problem and working but after execute prel MySQL-check.pl root password then Zabbix-sender it seems to be removed. Does anyone know why? I using this template link
List files provided by rpm package:
$ rpm -ql zabbix-sender
/usr/bin/zabbix_sender
...
Try /usr/bin/zabbix_sender - do you have correct PATH setting (is /usr/bin/ included there)?
I just created a docker container and tried to install SQL Relay inside it.
I've checked the prerequisites here and followed the installation documents here.
However, at the end of make install of sqlrelay, I saw an error like this:
update-rc.d: /etc/init.d/sqlrelay: file does not exist
update-rc.d: /etc/init.d/sqlrcachemanager: file does not exist
make[1]: *** [install] Error 1
make[1]: Leaving directory `/sqlrelay-0.66.0/init'
make: *** [install-init] Error 2
What might be wrong with my installation?
Here's the docker file I used to start my installation:
FROM ubuntu:trusty
RUN apt-get update && \
apt-get install libxml2-dev libpcre3 libpcre3-dev libmysqld-dev -y
RUN apt-get install mysql-server libmysqlclient-dev -y
# sql relay prerequisites
RUN apt-get install g++ make perl php5-dev python-dev ruby-dev \
tcl-dev openjdk-7-jdk erlang-dev nodejs-dev node-gyp mono-devel \
libmariadbclient-dev libpq-dev firebird-dev libfbclient2 libsqlite3-dev \
unixodbc-dev freetds-dev mdbtools-dev -y
COPY rudiments-0.56.0.tar.gz /
COPY sqlrelay-0.66.0.tar.gz /
EXPOSE 80
Here are the outputs of ./configure, make, and make install inside sqlrelay-0.66.0 folder:
configure_log
make_log
make_install_log
If you need more information of my installation process, just let me know. I can provide it.
I think you should use ADD instead of COPY in your lines such as
COPY rudiments-0.56.0.tar.gz /
Your COPY just copies the .tar.gz, but does not unpack them
as with ADD
If the <src> parameter of ADD is an archive in a recognised compression format, it will be unpacked
This is extracted from
What is the difference between the `COPY` and `ADD` commands in a Dockerfile?
I have recently hit the same issue. The issue I found was that the init Makefile was incorrectly detecting the use of systemctl on Ubuntu Trusty and putting the scripts there. Later on the script would try to find the scripts in init.d and fail.
The solution is to edit the Makefile: sqlrelay-X.X.X/init/Makefile
Replace:
install:
if ( test -d "/lib/systemd/system" ); \
With:
install:
if ( test -d "/lib/systemd/system_x" ); \
Make a similar change to the uninstall option later in the script and it will now correctly install on Ubuntu.