File: 0: Unexpected from Google BigQuery load job - google-bigquery

I've a compressed json file (900MB, newline delimited) and load into a new table via bq command and get the load failure:
e.g.
bq load --project_id=XXX --source_format=NEWLINE_DELIMITED_JSON --ignore_unknown_values mtdataset.mytable gs://xxx/data.gz schema.json
Waiting on bqjob_r3ec270ec14181ca7_000001461d860737_1 ... (1049s) Current status: DONE
BigQuery error in load operation: Error processing job 'XXX:bqjob_r3ec270ec14181ca7_000001461d860737_1': Too many errors encountered. Limit is: 0.
Failure details:
- File: 0: Unexpected. Please try again.
Why the error?
I tried again with the --max_bad_records, still not useful error message
bq load --project_id=XXX --source_format=NEWLINE_DELIMITED_JSON --ignore_unknown_values --max_bad_records 2 XXX.test23 gs://XXX/20140521/file1.gz schema.json
Waiting on bqjob_r518616022f1db99d_000001461f023f58_1 ... (319s) Current status: DONE
BigQuery error in load operation: Error processing job 'XXX:bqjob_r518616022f1db99d_000001461f023f58_1': Unexpected. Please try again.
And also cannot find any useful message in the console.
To BigQuery team, can you have a look using the job ID?

As far I know there are two error sections on a job. There is one error result, and that's what you see now. And there is a second, which should be a stream of errors. This second is important as you could have errors in it, but the actual job might succeed.
Also you can set the --max_bad_records=3 on the BQ tool. Check here for more params https://developers.google.com/bigquery/bq-command-line-tool
You probably have an error that is for each line, so you should try a sample set from this big file first.
Also there is an open feature request to improve the error message, you can star (vote) this ticket https://code.google.com/p/google-bigquery-tools/issues/detail?id=13
This answer will be picked up by the BQ team, so for them I am sharing that: We need an endpoint where we can query based on a jobid, the state, or the stream of errors. It would help a lot to get a full list of errors, it would help debugging the BQ jobs. This could be easy to implement.

I looked up this job in the BigQuery logs, and unfortunately, there isn't any more information than "failed to read" somewhere after about 930 MB have been read.
I've filed a bug that we're dropping important error information in one code path and submitted a fix. However, this fix won't be live until next week, and all that will do is give us more diagnostic information.
Since this is repeatable, it isn't likely a transient error reading from GCS. That means one of two problems: we have trouble decoding the .gz file, or there is something wrong with that particular GCS object.
For the first issue, you could try decompressing the file and re-uploading it as uncompressed. While it may sound like a pain to send gigabytes of data over the network, the good news is that the import will be faster since it can be done in parallel (we can't import a compressed file in parallel since it can only be read sequentially).
For the second issue (which is somewhat less likely) you could try downloading the file yourself to make sure you don't get errors, or try re-uploading the same file and seeing if that works.

Related

Ontotext GraphDB Repository cannot be used for queries

I am getting an error message while trying to sparql in a particular repository.
Error :
The currently selected repository cannot be used for queries due to an error:
Page [id=7, ref=1,private=false,deprecated=false] from pso has size of 206 != 820 which is written in the index: PageIndex#244 [OPENED] ref:3 (parent=null freePages=1 privatePages=0 deprecatedPages=0 unusedPages=0)
So I tried to recreate the repository by uploading a new RDF file, but still issue persist. Any solution? Thanks in advance
The error indicates an inconsistency between what is written in the index (pso.index) and the actual page (pso). Is there any chance that the binary files were modified/over-written/partially merged? Under normal operation, you should never get this an error.
The only way to hide this error is to start GraphDB with: ./graphdb -Dthrow.exception.on.index.inconsistency=false. I will recommend doing this only for dumping the repository content into an RDF file, drop the repository, and recreate it.

Flink s3 read error: Data read has a different length than the expected

Using flink 1.7.0, but also seen on flink 1.8.0. We are getting frequent but somewhat random errors when reading gzipped objects from S3 through the flink .readFile source:
org.apache.flink.fs.s3base.shaded.com.amazonaws.SdkClientException: Data read has a different length than the expected: dataLength=9713156; expectedLength=9770429; includeSkipped=true; in.getClass()=class org.apache.flink.fs.s3base.shaded.com.amazonaws.services.s3.AmazonS3Client$2; markedSupported=false; marked=0; resetSinceLastMarked=false; markCount=0; resetCount=0
at org.apache.flink.fs.s3base.shaded.com.amazonaws.util.LengthCheckInputStream.checkLength(LengthCheckInputStream.java:151)
at org.apache.flink.fs.s3base.shaded.com.amazonaws.util.LengthCheckInputStream.read(LengthCheckInputStream.java:93)
at org.apache.flink.fs.s3base.shaded.com.amazonaws.internal.SdkFilterInputStream.read(SdkFilterInputStream.java:76)
at org.apache.flink.fs.shaded.hadoop3.org.apache.hadoop.fs.s3a.S3AInputStream.closeStream(S3AInputStream.java:529)
at org.apache.flink.fs.shaded.hadoop3.org.apache.hadoop.fs.s3a.S3AInputStream.close(S3AInputStream.java:490)
at java.io.FilterInputStream.close(FilterInputStream.java:181)
at org.apache.flink.fs.s3.common.hadoop.HadoopDataInputStream.close(HadoopDataInputStream.java:89)
at java.util.zip.InflaterInputStream.close(InflaterInputStream.java:227)
at java.util.zip.GZIPInputStream.close(GZIPInputStream.java:136)
at org.apache.flink.api.common.io.InputStreamFSInputWrapper.close(InputStreamFSInputWrapper.java:46)
at org.apache.flink.api.common.io.FileInputFormat.close(FileInputFormat.java:861)
at org.apache.flink.api.common.io.DelimitedInputFormat.close(DelimitedInputFormat.java:536)
at org.apache.flink.streaming.api.functions.source.ContinuousFileReaderOperator$SplitReader.run(ContinuousFileReaderOperator.java:336)
ys
Within a given job, we generally see many / most of the jobs read successfully, but there's pretty much always at least one failure (say out of 50 files).
It seems this error is actually originating from the AWS client, so perhaps flink has nothing to do with it, but I'm hopeful someone might have an insight as to how to make this work reliably.
When the error occurs, it ends up killing the source and canceling all the connected operators. I'm still new to flink, but I would think that this is something that could be recoverable from a previous snapshot? Should I expect that flink will retry reading the file when this kind of exception occurs?
Maybe you can try to add more connection for s3a like
flink:
...
config: |
fs.s3a.connection.maximum: 320

BigQuery loads manually but not through the Java SDK

I have a Dataflow pipeline, running locally. The objective is to read a JSON file using TEXTIO, make sessions and load it into BigQuery. Given the structure I have to create a temp directory in GCS and then load it into BigQuery using that. Previously I had a data schema error that prevented me to load the data, see here. That issue is resolved.
So now when I run the pipeline locally it ends with dumping a temporary JSON newline delimited file into GCS. The SDK then gives me the following:
Starting BigQuery load job beam_job_xxxx_00001-1: try 1/3
INFO [main] (BigQueryIO.java:2191) - BigQuery load job failed: beam_job_xxxx_00001-1
...
Exception in thread "main" com.google.cloud.dataflow.sdk.Pipeline$PipelineExecutionException: java.lang.RuntimeException: Failed to create the load job beam_job_xxxx_00001, reached max retries: 3
at com.google.cloud.dataflow.sdk.Pipeline.run(Pipeline.java:187)
at pedesys.Dataflow.main(Dataflow.java:148)
Caused by: java.lang.RuntimeException: Failed to create the load job beam_job_xxxx_00001, reached max retries: 3
at com.google.cloud.dataflow.sdk.io.BigQueryIO$Write$WriteTables.load(BigQueryIO.java:2198)
at com.google.cloud.dataflow.sdk.io.BigQueryIO$Write$WriteTables.processElement(BigQueryIO.java:2146)
The errors are not very descriptive and the data is still not loaded in BigQuery. What is puzzling is that if I go to the BigQuery UI and load the same temporary file from GCS that was dumped by the SDK's Dataflow pipeline manually, in the same table, it works beautifully.
The relevant code parts are as follows:
PipelineOptions options = PipelineOptionsFactory.create();
options.as(BigQueryOptions.class)
.setTempLocation("gs://test/temp");
Pipeline p = Pipeline.create(options)
...
...
session_windowed_items.apply(ParDo.of(new FormatAsTableRowFn()))
.apply(BigQueryIO.Write
.named("loadJob")
.to("myproject:db.table")
.withSchema(schema)
.withCreateDisposition(BigQueryIO.Write.CreateDisposition.CREATE_IF_NEEDED)
.withWriteDisposition(BigQueryIO.Write.WriteDisposition.WRITE_APPEND)
);
The SDK is swallowing the error/exception and not reporting it to users. It's most likely a schema problem. To get the actual error that is happening you need to fetch the job details by either:
CLI - bq show -j job beam_job_<xxxx>_00001-1
Browser/Web: use "try it" at the bottom of the page here.
#jkff has raised an issue here to improve the error reporting.

Determine actual errors from a load job

Using the Java SDK I am creating a load job for just a single record with a fairly complicated schema. When monitoring the status of the load job, it takes a surprisingly long time (but perhaps this is due to working out the schema), but then says:
11:21:06.975 [main] INFO xxx.GoogleBigQuery - Job status (21694ms) create_scans_1384744805079_172221126: DONE
11:24:50.618 [main] ERROR xxx.GoogleBigQuery - Job create_scans_1384744805079_172221126 caused error (invalid) with message
Too many errors encountered. Limit is: 0.
11:24:50.810 [main] ERROR xxx.GoogleBigQuery - {
"message" : "Too many errors encountered. Limit is: 0.",
"reason" : "invalid"
?}
BTW - how do I tell the job that it can have more than zero errors using Java?
This load job does not appear in the list of recent jobs in the console, and as far as I can see, none of the Java objects contains any more details about the actual errors encountered. So how can I pro-grammatically find out what is going wrong? All I can find is:
if (err != null) {
log.error("Job {} caused error ({}) with message\n{}", jobID, err.getReason(), err.getMessage());
try {
log.error(err.toPrettyString());
}
...
In general I am having a difficult time finding good documentation for some of these things and am working it out by trial and error and short snippets of code found on here and older groups. If there is a better source of information than the getting started guides, then I would appreciate any pointers to that information. The Javadoc does not really help and I cannot find any complete examples of loading, querying, testing for errors, cataloging errors and so on.
This job is submitted via a NEWLINE_DELIMITIED_JSON record, supplied to the job via:
InputStream dummy = getClass().getResourceAsStream("/googlebigquery/xxx.record");
final InputStreamContent jsonIn = new InputStreamContent("application/octet-stream", dummy);
createTableJob = bigQuery.jobs().insert(projectId, loadJob, jsonIn).execute();
My authentication and so on seems to work correctly as separate Java code to list the projects, and the datasets in the project all works correctly. So I just need help in working what the actual error is - does it not like the schema (I have records nested within records for instance), or does it think that there is an error in the data I am submitting.
Thanks in advance for any help. The job number cited above is an actual failed load job if that helps any Google staffers who might read this.
It sounds like you have a couple of questions, so I'll try to address them all.
First, the way to get the status of the job that failed is to call jobs().get(jobId), which returns a job object that has an errorResult object that has the error that caused the job to fail (e.g. "too many errors"). The errorStream list is a lost of all of the errors on the job, which should tell you which lines hit errors.
Note if you have the job id, it may be easier to use bq to lookup the job -- you can run bq show <job_id> to get the job error information. If you add the --format=prettyjson it will print out all of the information in the job.
A hint you also might want to consider is to supply your own job id when you create the job -- then even if there is an error starting the job (i.e. the insert() call fails, perhaps due to a network error) you can look up the job to see what actually happened.
To tell BigQuery that some errors are allowed during import, you can use the maxBadResults setting in the load job. See https://developers.google.com/resources/api-libraries/documentation/bigquery/v2/java/latest/com/google/api/services/bigquery/model/JobConfigurationLoad.html#getMaxBadRecords().

Bigquery : Unexpected. Please try again when loading a 53GB CSV/ 1.4GB gZIP

I was trying to load 1.4Gb gZIP data in to my BigQuery table and i am getting the error Unexpected. Please try again consistently
job_7f1aa8d29ae641459c82243530eb1c65
I was trying to load a structure Row ID,Order Priority,Discount,Unit Price,Shipping Cost,Customer ID,Customer Name,Ship Mode,Product Category,Product Sub-Category,Product Base Margin,Region,State or Province,City,Postal Code,Order Date,Ship Date,Profit,Quantity ordered new,Sales,Order ID
the error is not clear on whats going wrong.
anyone else encountered this error?
Thanks.
It looks like your job ran out of time-- a 53 GB CSV file is a lot to process in one thread. Best practice is to either split your data in multiple chunks, or upload uncompressed data which can be processed in parallel.
I'm in the process of raising the allowed time somewhat, and we'll work on improving the error message when this happens.