Resetting the DB after each test run - testing

I have following problem:
I have a DB pre-filled with lot of test data. After each test run I would like to throw away changes made by the test procedure. I already tried to do this with an embedded H2 DB. I would just overwrite the DB files with the original ones and the problem would be solved. But another problem emerged: H2 doesn't support multi-threading without running as a server.
After that I looked at HSQLDB. If I understand it correctly, if it is used as normal file DB (not in-memory) it will still load the contents of the DB into the memory and persist the changed to disk after some time.
Is there any possibility to just read the file DB into memory, use it there and throw away any changes at the end? This would be perfect. A solution using rollbacks would be great too.
Thanks,
Daniel

For the H2 database:
To load a database from script, append ;INIT=runscript from '~/create.sql' to the database URL. You could also load the script from a resource in the classpath; for this replace ~/create.sql with classpath:/com/acme/init/create.sql. You can use that in combination of an in-memory database (jdbc:h2:mem:test;...) if you are not interested about the changes.
To use the H2 database in multi-threaded mode, append ;MULTI_THREADED=1 to the database URL. This applies to all modes (in-memory, embedded, client/server).

HSQLDB has an option for this usage.
After creating the test database, perform SHUTDOWN. You will have a .properties and .script files. In the .properties file add this line:
files_readonly=true
Then use this database for the tests. No rollback or any special action will be necessary when the app exits.
Alternatively, append this to your test application's connection URL, ;files_readonly=true
See this Chapter of the Guide:
http://www.hsqldb.org/doc/2.0/guide/dbproperties-chapt.html#dpc_db_file_mem
For multi-threaded application testing, the database transaction model is usually MVCC, which you set in the original database.

Related

SQL (or any relational db) engine with SCM-friendly backing store [duplicate]

I'm doing a web app, and I need to make a branch for some major changes, the thing is, these changes require changes to the database schema, so I'd like to put the entire database under git as well.
How do I do that? is there a specific folder that I can keep under a git repository? How do I know which one? How can I be sure that I'm putting the right folder?
I need to be sure, because these changes are not backward compatible; I can't afford to screw up.
The database in my case is PostgreSQL
Edit:
Someone suggested taking backups and putting the backup file under version control instead of the database. To be honest, I find that really hard to swallow.
There has to be a better way.
Update:
OK, so there' no better way, but I'm still not quite convinced, so I will change the question a bit:
I'd like to put the entire database under version control, what database engine can I use so that I can put the actual database under version control instead of its dump?
Would sqlite be git-friendly?
Since this is only the development environment, I can choose whatever database I want.
Edit2:
What I really want is not to track my development history, but to be able to switch from my "new radical changes" branch to the "current stable branch" and be able for instance to fix some bugs/issues, etc, with the current stable branch. Such that when I switch branches, the database auto-magically becomes compatible with the branch I'm currently on.
I don't really care much about the actual data.
Take a database dump, and version control that instead. This way it is a flat text file.
Personally I suggest that you keep both a data dump, and a schema dump. This way using diff it becomes fairly easy to see what changed in the schema from revision to revision.
If you are making big changes, you should have a secondary database that you make the new schema changes to and not touch the old one since as you said you are making a branch.
I'm starting to think of a really simple solution, don't know why I didn't think of it before!!
Duplicate the database, (both the schema and the data).
In the branch for the new-major-changes, simply change the project configuration to use the new duplicate database.
This way I can switch branches without worrying about database schema changes.
EDIT:
By duplicate, I mean create another database with a different name (like my_db_2); not doing a dump or anything like that.
Use something like LiquiBase this lets you keep revision control of your Liquibase files. you can tag changes for production only, and have lb keep your DB up to date for either production or development, (or whatever scheme you want).
Irmin (branching + time travel)
Flur.ee (immutable + time travel + graph query)
XTDB (formerly called 'CruxDB') (time travel + query)
TerminusDB (immutable + branching + time travel + Graph Query!)
DoltDB (branching + time-travel + SQL query)
Quadrable (branching + remote state verification)
EdgeDB (no real time travel, but migrations derived by the compiler after schema changes)
Migra (diffing for Postgres schemas/data. Auto-generate migration scripts, auto-sync db state)
ImmuDB (immutable + time-travel)
I've come across this question, as I've got a similar problem, where something approximating a DB based Directory structure, stores 'files', and I need git to manage it. It's distributed, across a cloud, using replication, hence it's access point will be via MySQL.
The gist of the above answers, seem to similarly suggest an alternative solution to the problem asked, which kind of misses the point, of using Git to manage something in a Database, so I'll attempt to answer that question.
Git is a system, which in essence stores a database of deltas (differences), which can be reassembled, in order, to reproduce a context. The normal usage of git assumes that context is a filesystem, and those deltas are diff's in that file system, but really all git is, is a hierarchical database of deltas (hierarchical, because in most cases each delta is a commit with at least 1 parents, arranged in a tree).
As long as you can generate a delta, in theory, git can store it. The problem is normally git expects the context, on which it's generating delta's to be a file system, and similarly, when you checkout a point in the git hierarchy, it expects to generate a filesystem.
If you want to manage change, in a database, you have 2 discrete problems, and I would address them separately (if I were you). The first is schema, the second is data (although in your question, you state data isn't something you're concerned about). A problem I had in the past, was a Dev and Prod database, where Dev could take incremental changes to the schema, and those changes had to be documented in CVS, and propogated to live, along with additions to one of several 'static' tables. We did that by having a 3rd database, called Cruise, which contained only the static data. At any point the schema from Dev and Cruise could be compared, and we had a script to take the diff of those 2 files and produce an SQL file containing ALTER statements, to apply it. Similarly any new data, could be distilled to an SQL file containing INSERT commands. As long as fields and tables are only added, and never deleted, the process could automate generating the SQL statements to apply the delta.
The mechanism by which git generates deltas is diff and the mechanism by which it combines 1 or more deltas with a file, is called merge. If you can come up with a method for diffing and merging from a different context, git should work, but as has been discussed you may prefer a tool that does that for you. My first thought towards solving that is this https://git-scm.com/book/en/v2/Customizing-Git-Git-Configuration#External-Merge-and-Diff-Tools which details how to replace git's internal diff and merge tool. I'll update this answer, as I come up with a better solution to the problem, but in my case I expect to only have to manage data changes, in-so-far-as a DB based filestore may change, so my solution may not be exactly what you need.
There is a great project called Migrations under Doctrine that built just for this purpose.
Its still in alpha state and built for php.
http://docs.doctrine-project.org/projects/doctrine-migrations/en/latest/index.html
Take a look at RedGate SQL Source Control.
http://www.red-gate.com/products/sql-development/sql-source-control/
This tool is a SQL Server Management Studio snap-in which will allow you to place your database under Source Control with Git.
It's a bit pricey at $495 per user, but there is a 28 day free trial available.
NOTE
I am not affiliated with RedGate in any way whatsoever.
I've released a tool for sqlite that does what you're asking for. It uses a custom diff driver leveraging the sqlite projects tool 'sqldiff', UUIDs as primary keys, and leaves off the sqlite rowid. It is still in alpha so feedback is appreciated.
Postgres and mysql are trickier, as the binary data is kept in multiple files and may not even be valid if you were able to snapshot it.
https://github.com/cannadayr/git-sqlite
I want to make something similar, add my database changes to my version control system.
I am going to follow the ideas in this post from Vladimir Khorikov "Database versioning best practices". In summary i will
store both its schema and the reference data in a source control system.
for every modification we will create a separate SQL script with the changes
In case it helps!
You can't do it without atomicity, and you can't get atomicity without either using pg_dump or a snapshotting filesystem.
My postgres instance is on zfs, which I snapshot occasionally. It's approximately instant and consistent.
I think X-Istence is on the right track, but there are a few more improvements you can make to this strategy. First, use:
$pg_dump --schema ...
to dump the tables, sequences, etc and place this file under version control. You'll use this to separate the compatibility changes between your branches.
Next, perform a data dump for the set of tables that contain configuration required for your application to operate (should probably skip user data, etc), like form defaults and other data non-user modifiable data. You can do this selectively by using:
$pg_dump --table=.. <or> --exclude-table=..
This is a good idea because the repo can get really clunky when your database gets to 100Mb+ when doing a full data dump. A better idea is to back up a more minimal set of data that you require to test your app. If your default data is very large though, this may still cause problems though.
If you absolutely need to place full backups in the repo, consider doing it in a branch outside of your source tree. An external backup system with some reference to the matching svn rev is likely best for this though.
Also, I suggest using text format dumps over binary for revision purposes (for the schema at least) since these are easier to diff. You can always compress these to save space prior to checking in.
Finally, have a look at the postgres backup documentation if you haven't already. The way you're commenting on backing up 'the database' rather than a dump makes me wonder if you're thinking of file system based backups (see section 23.2 for caveats).
What you want, in spirit, is perhaps something like Post Facto, which stores versions of a database in a database. Check this presentation.
The project apparently never really went anywhere, so it probably won't help you immediately, but it's an interesting concept. I fear that doing this properly would be very difficult, because even version 1 would have to get all the details right in order to have people trust their work to it.
This question is pretty much answered but I would like to complement X-Istence's and Dana the Sane's answer with a small suggestion.
If you need revision control with some degree of granularity, say daily, you could couple the text dump of both the tables and the schema with a tool like rdiff-backup which does incremental backups. The advantage is that instead of storing snapshots of daily backups, you simply store the differences from the previous day.
With this you have both the advantage of revision control and you don't waste too much space.
In any case, using git directly on big flat files which change very frequently is not a good solution. If your database becomes too big, git will start to have some problems managing the files.
Here is what i am trying to do in my projects:
separate data and schema and default data.
The database configuration is stored in configuration file that is not under version control (.gitignore)
The database defaults (for setting up new Projects) is a simple SQL file under version control.
For the database schema create a database schema dump under the version control.
The most common way is to have update scripts that contains SQL Statements, (ALTER Table.. or UPDATE). You also need to have a place in your database where you save the current version of you schema)
Take a look at other big open source database projects (piwik,or your favorite cms system), they all use updatescripts (1.sql,2.sql,3.sh,4.php.5.sql)
But this a very time intensive job, you have to create, and test the updatescripts and you need to run a common updatescript that compares the version and run all necessary update scripts.
So theoretically (and thats what i am looking for) you could
dumped the the database schema after each change (manually, conjob, git hooks (maybe before commit))
(and only in some very special cases create updatescripts)
After that in your common updatescript (run the normal updatescripts, for the special cases) and then compare the schemas (the dump and current database) and then automatically generate the nessesary ALTER Statements. There some tools that can do this already, but haven't found yet a good one.
What I do in my personal projects is, I store my whole database to dropbox and then point MAMP, WAMP workflow to use it right from there.. That way database is always up-to-date where ever I need to do some developing. But that's just for dev! Live sites is using own server for that off course! :)
Storing each level of database changes under git versioning control is like pushing your entire database with each commit and restoring your entire database with each pull.
If your database is so prone to crucial changes and you cannot afford to loose them, you can just update your pre_commit and post_merge hooks.
I did the same with one of my projects and you can find the directions here.
That's how I do it:
Since your have free choise about DB type use a filebased DB like e.g. firebird.
Create a template DB which has the schema that fits your actual branch and store it in your repository.
When executing your application programmatically create a copy of your template DB, store it somewhere else and just work with that copy.
This way you can put your DB schema under version control without the data. And if you change your schema you just have to change the template DB
We used to run a social website, on a standard LAMP configuration. We had a Live server, Test server, and Development server, as well as the local developers machines. All were managed using GIT.
On each machine, we had the PHP files, but also the MySQL service, and a folder with Images that users would upload. The Live server grew to have some 100K (!) recurrent users, the dump was about 2GB (!), the Image folder was some 50GB (!). By the time that I left, our server was reaching the limit of its CPU, Ram, and most of all, the concurrent net connection limits (We even compiled our own version of network card driver to max out the server 'lol'). We could not (nor should you assume with your website) put 2GB of data and 50GB of images in GIT.
To manage all this under GIT easily, we would ignore the binary folders (the folders containing the Images) by inserting these folder paths into .gitignore. We also had a folder called SQL outside the Apache documentroot path. In that SQL folder, we would put our SQL files from the developers in incremental numberings (001.florianm.sql, 001.johns.sql, 002.florianm.sql, etc). These SQL files were managed by GIT as well. The first sql file would indeed contain a large set of DB schema. We don't add user-data in GIT (eg the records of the users table, or the comments table), but data like configs or topology or other site specific data, was maintained in the sql files (and hence by GIT). Mostly its the developers (who know the code best) that determine what and what is not maintained by GIT with regards to SQL schema and data.
When it got to a release, the administrator logs in onto the dev server, merges the live branch with all developers and needed branches on the dev machine to an update branch, and pushed it to the test server. On the test server, he checks if the updating process for the Live server is still valid, and in quick succession, points all traffic in Apache to a placeholder site, creates a DB dump, points the working directory from 'live' to 'update', executes all new sql files into mysql, and repoints the traffic back to the correct site. When all stakeholders agreed after reviewing the test server, the Administrator did the same thing from Test server to Live server. Afterwards, he merges the live branch on the production server, to the master branch accross all servers, and rebased all live branches. The developers were responsible themselves to rebase their branches, but they generally know what they are doing.
If there were problems on the test server, eg. the merges had too many conflicts, then the code was reverted (pointing the working branch back to 'live') and the sql files were never executed. The moment that the sql files were executed, this was considered as a non-reversible action at the time. If the SQL files were not working properly, then the DB was restored using the Dump (and the developers told off, for providing ill-tested SQL files).
Today, we maintain both a sql-up and sql-down folder, with equivalent filenames, where the developers have to test that both the upgrading sql files, can be equally downgraded. This could ultimately be executed with a bash script, but its a good idea if human eyes kept monitoring the upgrade process.
It's not great, but its manageable. Hope this gives an insight into a real-life, practical, relatively high-availability site. Be it a bit outdated, but still followed.
Update Aug 26, 2019:
Netlify CMS is doing it with GitHub, an example implementation can be found here with all information on how they implemented it netlify-cms-backend-github
I say don't. Data can change at any given time. Instead you should only commit data models in your code, schema and table definitions (create database and create table statements) and sample data for unit tests. This is kinda the way that Laravel does it, committing database migrations and seeds.
I would recommend neXtep (Link removed - Domain was taken over by a NSFW-Website) for version controlling the database it has got a good set of documentation and forums that explains how to install and the errors encountered. I have tested it for postgreSQL 9.1 and 9.3, i was able to get it working for 9.1 but for 9.3 it doesn't seems to work.
Use a tool like iBatis Migrations (manual, short tutorial video) which allows you to version control the changes you make to a database throughout the lifecycle of a project, rather than the database itself.
This allows you to selectively apply individual changes to different environments, keep a changelog of which changes are in which environments, create scripts to apply changes A through N, rollback changes, etc.
I'd like to put the entire database under version control, what
database engine can I use so that I can put the actual database under
version control instead of its dump?
This is not database engine dependent. By Microsoft SQL Server there are lots of version controlling programs. I don't think that problem can be solved with git, you have to use a pgsql specific schema version control system. I don't know whether such a thing exists or not...
Use a version-controlled database, of which there are now several.
https://www.dolthub.com/blog/2021-09-17-database-version-control/
These products don't apply version control on top of another type of database -- they are their own database engines that support version control operations. So you need to migrate to them or start building on them in the first place.
I write one of them, DoltDB, which combines the interfaces of MySQL and Git. Check it out here:
https://github.com/dolthub/dolt
I wish it were simpler. Checking in the schema as a text file is a good start to capture the structure of the DB. For the content, however, I have not found a cleaner, better method for git than CSV files. One per table. The DB can then be edited on multiple branches and merges extremely well.

SQL Database in GitHub

I am building a Java app that uses an SQLite database to hold most of its data. For the end-user, the database would be almost entirely read-only, with very occasional edits. I'll (theoretically) be displaying/distributing it through my GitHub page, so my question is:
What's the best way to load the database into GitHub? (I'm using IntelliJ with DataGrip.)
I'd prefer to be able to update the database when I commit/push, instead of having to overwrite the whole file. The closest question I can find is How to include MySQL database schema on GitHub? but there could potentially be hundreds or thousands of entries, so I can't just rebuild the tables when the user installs the app.
I'm applying for entry-level developer jobs, and this project is going to be my main portfolio piece during job-hunting. I'm trying to make sure it is not only functional but also makes a good impression. Any help is (very) greatly appreciated.
EDIT:
After moving my .db file into the folder connected to GitHub (same level as my src folder) apparently I can now commit/push it with the rest of my files. How do I make sure that the connection from my Java code to the database stays valid once it is loaded onto another user's system? Can I just stick with
connection = DriverManager.getConnection("jdbc:sqlite:mydatabase.db");
or do I need to rework the path?
Upon starting, if your application can't find a corresponding sqlite database file, have it create one. Then do initial load of your tables from either CSV, JSON or XML files.
You can upload these files to Git, as they are text formats.

How to automate source control with Oracle database

I work in an Oracle instance that has hundreds of schemas and multiple developers. We have a development instance where developers can integrate their work before test or production.
We want to have source control for all the DDL run in this integrated development database. Currently this is done through a product Red Gate which we run manually after we make a change to the database. Redgate finds the changes between what is in the schema and what was last checked into source control and makes a script of the differences and puts this into source control.
The problem however is of course that running regdate can take some time and people run it infrequently or not at all for small changes. Also redgate will only look in one schema at a time and it would be VERY time consuming to manually run it against all schemas to guarantee that they are up to date. However if the source controlled code cannot be relied upon it becomes less useful...
What would seem to be ideal would be to have some software that could periodically (even once a day), or when triggered by DDL being run, update the source control (preferably github as this is used by other teams) from all the schemas.
I cannot seem to see any existing software which can be simply used to do this.
Is there a problem with doing this? (there is no need to address multiple developers overwriting each others work on the same day as we have this covered in a separate process) Is anyone doing this? Can anyone recommend a way to do this?
We do this with help of a PL/SQL function, a python script and a shell script:
The PL/SQL function can generate the DDL of a whole schema and returns this as CLOB
The python script connects to the database, fetches the DDL and stores it in files
The shell script runs the Source Control to add the modifications (we use Bazaar here).
You can see the scripts on PasteBin:
The PL/SQL function is here: http://pastebin.com/AG2Fa9zL
The python program (schema_exporter.py): http://pastebin.com/nd8Lf0gK
The shell script:
The shell script:
python schema_exporter.py
d=$(date +%Y-%m-%d__%H_%M_%S)
bzr add
bzr st | grep -q -E 'added|modified' && commit -m "Database objects on $d"
exit 0
This shell script is configured to run from cron every day.
Being in the database version control space for 5 years (as director of product management at DBmaestro) and having worked as a DBA for over two decades, I can tell you the simple fact that you cannot treat the database objects as you treat your Java, C# or other files and save the changes in simple DDL scripts.
There are many reasons and I'll name a few:
Files are stored locally on the developer’s PC and the change s/he
makes do not affect other developers. Likewise, the developer is not
affected by changes made by her colleague. In database this is
(usually) not the case and developers share the same database
environment, so any change that were committed to the database affect
others.
Publishing code changes is done using the Check-In / Submit Changes /
etc. (depending on which source control tool you use). At that point,
the code from the local directory of the developer is inserted into
the source control repository. Developer who wants to get the latest
code need to request it from the source control tool. In database the
change already exists and impacts other data even if it was not
checked-in into the repository.
During the file check-in, the source control tool performs a conflict
check to see if the same file was modified and checked-in by another
developer during the time you modified your local copy. Again there
is no check for this in the database. If you alter a procedure from
your local PC and at the same time I modify the same procedure with
code form my local PC then we override each other’s changes.
The build process of code is done by getting the label / latest
version of the code to an empty directory and then perform a build –
compile. The output are binaries in which we copy & replace the
existing. We don't care what was before. In database we cannot
recreate the database as we need to maintain the data! Also the
deployment executes SQL scripts which were generated in the build
process.
When executing the SQL scripts (with the DDL, DCL, DML (for static
content) commands) you assume the current structure of the
environment match the structure when you create the scripts. If not,
then your scripts can fail as you are trying to add new column which
already exists.
Treating SQL scripts as code and manually generating them will cause
syntax errors, database dependencies errors, scripts that are not
reusable which complicate the task of developing, maintaining,
testing those scripts. In addition, those scripts may run on an
environment which is different from the one you though it would run
on.
Sometimes the script in the version control repository does not match
the structure of the object that was tested and then errors will
happen in production!
There are many more, but I think you got the picture.
What I found that works is the following:
Use an enforced version control system that enforces
check-out/check-in operations on the database objects. This will
make sure the version control repository matches the code that was
checked-in as it reads the metadata of the object in the check-in
operation and not as a separated step done manually. This also allow
several developers to work in parallel on the same database while
preventing them to accidently override each other code.
Use an impact analysis that utilize baselines as part of the
comparison to identify conflicts and identify if a difference (when
comparing the object's structure between the source control
repository and the database) is a real change that origin from
development or a difference that was origin from a different path and
then it should be skipped, such as different branch or an emergency
fix.
Use a solution that knows how to perform Impact Analysis for many
schemas at once, using UI or using API in order to eventually
automate the build & deploy process.
An article I wrote on this was published here, you are welcome to read it.
To me it seems like your way of working is backwards: developers run DDL against the DB in an unordered fashion and then you need an automated tool for inferring the changes (and the DDL) that was run.
The process would be in better control if you did the following instead:
Developers write DDL as SQL scripts, preferably using a migration tool such as Flyway (http://flywaydb.org/documentation/migration/sql.html).
Migration scripts are checked into version control
Migration scripts are periodically run against the DB (e.g. by the migration tool)
In this workflow, the DB would only get altered through automated migration scripts and no-one is allowed to do changes manually. Could this work for you?
(I develop the Oracle tools for Redgate)
Actually using the tools you can already what I think you're asking for using Schema Compare for Oracle.
You can compare multiple schemas either in the UI or via the command line - I think what you're after is automating the command line tool which can create difference scripts, sync between source and destination (live, snapshot or scripts) and generate reports.
You can automate the command line to sync to a scripts folder which is your source code checkout and then subsequently run a command to commit the changes.
I think that's all good :)
We built a commerical tool that bridges Oracle with Git. It helps you manage your database objects with Git. Basically, the database becomes the working directory for the developer. You can perform git operations in the database such as reset, commit, branch, merge etc... and the database code is updated automatically. It might be worth taking a look: https://www.gitora.com

C++ routine to delete data from database

Is there a mechanism in googletest framework that allows the test to clear the data even after a test fails (The code throws an exception and stops further execution (of clearing the data) if a test fails.
Thanks!
Run the tests on a temporary, in-memory database.
Since SQLite operates from a single file, you can use SetUp() in a test fixture to copy a pre configured database file to where your program expects the database to be, overwriting the "runtime" database file with the pre configured one before every test.
That way every test gets a completely fresh database, initialized with all tables and possibly base data of your choice without running any database creation scripts. That should keep test runs speedy.

HSQLDB delete all data and and configuration files

I have a problem about hsqldb database. Firstly I want to ask where hsqldb keep data in file system, it keeps in directory which we give in the jdbc URL,doesn't it? Secondly, after test finished I want to clear all of the things about data and files that is created for test. Which procedure I should follow?
Answer to your first question is yes - hsqldb creates a directory and stores everything it needs for the database there.
2nd question - if you want to start over from scratch with an empty database, you can delete the created directory, and the JDBC driver will recreate it when you try to connect. My guess is though that you want to keep the database intact, but just remove your test data? In that case you will need a cleanup script to explicitly remove the rows that you added. This usually lives in a 'teardown' function of your test case.
You might want to use an in-memory HSQL database.