awk all lines of the input file where first and the second field are the same - awk

I am having time here with the following task. I need to print all lines of the input file
where 1st field matches the 2nd. Here is my syntax, which apparently is not working:
awk '$1==$2 {print $0}' < inputfile, any ideas what is wrong ?

The third field would be $3, no?
awk '$1==$3' inputfile
(Since we're here, you could delete the print $0, which is implied, and also the < redirection.)

Related

How to find and match an exact string in a column using AWK?

I'm having trouble on matching an exact string that I want to find in a file using awk.
I have the file called "sup_groups.txt" that contains:
(the structure is: "group_name:pw:group_id:user1<,user2>...")
adm:x:4:syslog,adm1
admins:x:1006:adm2,adm12,manuel
ssl-cert:x:122:postgres
ala2:x:1009:aceto,salvemini
conda:x:1011:giovannelli,galise,aceto,caputo,haymele,salvemini,scala,adm2,adm12
adm1Group:x:1022:adm2,adm1,adm3
docker:x:998:manuel
now, I want to extract the records that have in the user list the user "adm1" and print the first column (the group name), but you can see that there is a user called "adm12", so when i do this:
awk -F: '$4 ~ "adm1" {print $1}' sup_groups.txt
the output is:
adm
admins
conda
adm1Group
the command of course also prints those records that contain the string "adm12", but I don't want these lines because I'm interested only on the user "adm1".
So, How can I change this command so that it just prints the lines 1 and 6 (excluding 2 and 5)?
thank you so much and sorry for my bad English
EDIT: thank you for the answers, u gave me inspiration for the solution, i think this might work as well as your solutions but more simplified:
awk -F: '$4 ~ "adm,|adm1$|:adm1," {print $1}' sup_groups.txt
basically I'm using ORs covering all the cases and excluding the "adm12"
let me know if you think this is correct
1st solution: Using split function of awk. With your shown samples, please try following awk code.
awk -F':' '
{
num=split($4,arr,",")
for(i=1;i<=num;i++){
if(arr[i]=="adm1"){
print
}
}
}
' Input_file
Explanation: Adding detailed explanation for above.
awk -F':' ' ##Starting awk program from here setting field separator as : here.
{
num=split($4,arr,",") ##Using split to split 4th field into array arr with delimiter of ,
for(i=1;i<=num;i++){ ##Running for loop till value of num(total elements of array arr).
if(arr[i]=="adm1"){ ##Checking condition if arr[i] value is equal to adm1 then do following.
print ##printing current line here.
}
}
}
' Input_file ##Mentioning Input_file name here.
2nd solution: Using regex and conditions in awk.
awk -F':' '$4~/^adm1,/ || $4~/,adm1,/ || $4~/,adm1$/' Input_file
OR if 4th field doesn't have comma at all then try following:
awk -F':' '$4~/^adm1,/ || $4~/,adm1,/ || $4~/,adm1$/ || $4=="adm1"' Input_file
Explanation: Making field separator as : and checking condition if 4th field is either equal to ^adm1,(starting adm1,) OR its equal to ,adm1, OR its equal to ,adm1$(ending with ,adm1) then print that line.
This should do the trick:
$ awk -F: '"," $4 "," ~ ",adm1," { print $1 }' file
The idea behind this is the encapsulate both the group field between commas such that each group entry is encapsulated by commas. So instead of searching for adm1 you search for ,adm1,
So if your list looks like:
adm2,adm12,manuel
and, by adding commas, you convert it too:
,adm2,adm12,manuel,
you can always search for ,adm1, and find the perfect match .
once u setup FS per task requirements, then main body becomes barely just :
NF = !_ < NF
or even more straight forward :
{m,n,g}awk —- --NF
=
{m,g}awk 'NF=!_<NF' OFS= FS=':[^:]*:[^:]*:[^:]*[^[:alpha:]]?adm[0-9]+.*$'
adm
admins
conda
adm1Group

Can I delete a field in awk?

This is test.txt:
0x01,0xDF,0x93,0x65,0xF8
0x01,0xB0,0x01,0x03,0x02,0x00,0x64,0x06,0x01,0xB0
0x01,0xB2,0x00,0x76
If I run
awk -F, 'BEGIN{OFS=","}{$2="";print $0}' test.txt
the result is:
0x01,,0x93,0x65,0xF8
0x01,,0x01,0x03,0x02,0x00,0x64,0x06,0x01,0xB0
0x01,,0x00,0x76
The $2 wasn't deleted, it just became empty.
I hope, when printing $0, that the result is:
0x01,0x93,0x65,0xF8
0x01,0x01,0x03,0x02,0x00,0x64,0x06,0x01,0xB0
0x01,0x00,0x76
All the existing solutions are good though this is actually a tailor made job for cut:
cut -d, -f 1,3- file
0x01,0x93,0x65,0xF8
0x01,0x01,0x03,0x02,0x00,0x64,0x06,0x01,0xB0
0x01,0x00,0x76
If you want to remove 3rd field then use:
cut -d, -f 1,2,4- file
To remove 4th field use:
cut -d, -f 1-3,5- file
I believe simplest would be to use sub function to replace first occurrence of continuous ,,(which are getting created after you made 2nd field NULL) with single ,. But this assumes that you don't have any commas in between field values.
awk 'BEGIN{FS=OFS=","}{$2="";sub(/,,/,",");print $0}' Input_file
2nd solution: OR you could use match function to catch regex from first comma to next comma's occurrence and get before and after line of matched string.
awk '
match($0,/,[^,]*,/){
print substr($0,1,RSTART-1)","substr($0,RSTART+RLENGTH)
}' Input_file
It's a bit heavy-handed, but this moves each field after field 2 down a place, and then changes NF so the unwanted field is not present:
$ awk -F, -v OFS=, '{ for (i = 2; i < NF; i++) $i = $(i+1); NF--; print }' test.txt
0x01,0x93,0x65,0xF8
0x01,0x01,0x03,0x02,0x00,0x64,0x06,0x01
0x01,0x00,0x76
$
Tested with both GNU Awk 4.1.3 and BSD Awk ("awk version 20070501" on macOS Mojave 10.14.6 — don't ask; it frustrates me too, but sometimes employers are not very good at forward thinking). Setting NF may or may not work on older versions of Awk — I was a little surprised it did work, but the surprise was a pleasant one, for a change.
If Awk is not an absolute requirement, and the input is indeed as trivial as in your example, sed might be a simpler solution.
sed 's/,[^,]*//' test.txt
This is especially elegant if you want to remove the second field. A more generic approach to remove, the nth field would require you to put in a regex which matches the first n - 1 followed by the nth, then replace that with just the the first n - 1.
So for n = 4 you'd have
sed 's/\([^,]*,[^,]*,[^,]*,\)[^,]*,/\1/' test.txt
or more generally, if your sed dialect understands braces for specifying repetitions
sed 's/\(\([^,]*,\)\{3\}\)[^,]*,/\1/' test.txt
Some sed dialects allow you to lose all those pesky backslashes with an option like -r or -E but again, this is not universally supported or portable.
In case it's not obvious, [^,] matches a single character which is not (newline or) comma; and \1 recalls the text from first parenthesized match (back reference; \2 recalls the second, etc).
Also, this is completely unsuitable for escaped or quoted fields (though I'm not saying it can't be done). Every comma acts as a field separator, no matter what.
With GNU sed you can add a number modifier to substitute nth match of non-comma characters followed by comma:
sed -E 's/[^,]*,//2' file
Using awk in a regex-free way, with the option to choose which line will be deleted:
awk '{ col = 2; n = split($0,arr,","); line = ""; for (i = 1; i <= n; i++) line = line ( i == col ? "" : ( line == "" ? "" : "," ) arr[i] ); print line }' test.txt
Step by step:
{
col = 2 # defines which column will be deleted
n = split($0,arr,",") # each line is split into an array
# n is the number of elements in the array
line = "" # this will be the new line
for (i = 1; i <= n; i++) # roaming through all elements in the array
line = line ( i == col ? "" : ( line == "" ? "" : "," ) arr[i] )
# appends a comma (except if line is still empty)
# and the current array element to the line (except when on the selected column)
print line # prints line
}
Another solution:
You can just pipe the output to another sed and squeeze the delimiters.
$ awk -F, 'BEGIN{OFS=","}{$2=""}1 ' edward.txt | sed 's/,,/,/g'
0x01,0x93,0x65,0xF8
0x01,0x01,0x03,0x02,0x00,0x64,0x06,0x01,0xB0
0x01,0x00,0x76
$
Commenting on the first solution of #RavinderSingh13 using sub() function:
awk 'BEGIN{FS=OFS=","}{$2="";sub(/,,/,",");print $0}' Input_file
The gnu-awk manual: https://www.gnu.org/software/gawk/manual/html_node/Changing-Fields.html
It is important to note that making an assignment to an existing field changes the value of $0 but does not change the value of NF, even when you assign the empty string to a field." (4.4 Changing the Contents of a Field)
So, following the first solution of RavinderSingh13 but without using, in this case,sub() "The field is still there; it just has an empty value, delimited by the two colons":
awk 'BEGIN {FS=OFS=","} {$2="";print $0}' file
0x01,,0x93,0x65,0xF8
0x01,,0x01,0x03,0x02,0x00,0x64,0x06,0x01,0xB0
0x01,,0x00,0x76
My solution:
awk -F, '
{
regex = "^"$1","$2
sub(regex, $1, $0);
print $0;
}'
or one line code:
awk -F, '{regex="^"$1","$2;sub(regex, $1, $0);print $0;}' test.txt
I found that OFS="," was not necessary
I would do it following way, let file.txt content be:
0x01,0xDF,0x93,0x65,0xF8
0x01,0xB0,0x01,0x03,0x02,0x00,0x64,0x06,0x01,0xB0
0x01,0xB2,0x00,0x76
then
awk 'BEGIN{FS=",";OFS=""}{for(i=2;i<=NF;i+=1){$i="," $i};$2="";print}' file.txt
output
0x01,0x93,0x65,0xF8
0x01,0x01,0x03,0x02,0x00,0x64,0x06,0x01,0xB0
0x01,0x00,0x76
Explanation: I set OFS to nothing (empty string), then for 2nd and following column I add , at start. Finally I set what is now comma and value to nothing. Keep in mind this solution would need rework if you wish to remove 1st column.

why does my awk code that should print word only on specific condition actually prints for all lines?

I am trying to learn awk functionalities and as a simple exercise I try to print values in a file where if the first word is PERMNO then it should print the third word else it should just ignore.
the code I am using is
awk '{if ($1 = "PERMNO"){ print $3}}' ddoutput.txt
Right now this prints third word from every line. But I expect it to print only the third word when the first word of line is PERMNO. What am I missing?
With $1 = "PERMNO" you're assigning PERMNO to first field, which always evaluates to true. You should use the == operator like:
awk '{if($1=="PERMNO"){print $3}}' file
Or more awkish:
awk '$1=="PERMNO"{print $3}' file

awk to parse field if specific value is in another

In the awk below I am trying to parse $2 using the _ only if $3 is a specific valus (ID). I am reading that parsed value into an array and going to use it as a key in a lookup. The awk does execute but the entire line 2 or line with ID in $3 prints not just the desired. The print statement is only to see what results (for testing only) and will not be part of the script. Thank you :).
awk
awk -F'\t' '$3=="ID"
f="$(echo $2|cut -d_ -f1,1)"
{
print $f
}' file
file tab-delimited
R_Index locus type
17 chr20:31022959 NON
18 chr11:118353210-chr9:20354877_KMT2A-MLLT3.K8M9 ID
desired
$f = chr11:118353210-chr9:20354877
Not completely clear, could you please try following.
awk '{split($2,array,"_");if(array[2]=="KMT2A-MLLT3.K8M9"){print array[1]}}' Input_file
Or if you want top change 2nd field's value along with printing all lines then try following once.
awk '{split($2,array,"_");if(array[2]=="KMT2A-MLLT3.K8M9"){$2=array[1]}} 1' Input_file

awk to parse field by using period and output unique digits

I am trying to use awk to parse $2 on using the first . in the string and output the digits with the header row above it. The current output is close but both commands seem to taking $1 as well. Do I need to specify something in the command to only prints the digits in $2, it seems close. Thank you :).
file
R_2016_09_20_12_47
IonXpress_007 16-0001.xxx.xxx
IonXpress_008 16-0002.xxx.xxx
IonXpress_009 16-0003.xxx.xxx
R_2016_09_20_12_46
IonXpress_007 16-0004.xxx.xxx
IonXpress_008 16-0005.xxx.xxx
IonXpress_009 16-0006.xxx.xxx
desired output
R_2016_09_20_12_47
16-0001
16-0002
16-0003
R_2016_09_20_12_46
16-0004
16-0005
16-0006
awk
awk -F. '{print $1}' file
cut
cut -d'.' -f1 file
current output
R_2016_09_20_12_47
IonXpress_007 16-0001
IonXpress_008 16-0002
IonXpress_009 16-0003
R_2016_09_20_12_46
IonXpress_001 16-0004
IonXpress_002 16-0005
IonXpress_003 16-0006
Try this :
% awk -F'[ .]' '{print $2 ? $2 : $1}' file
R_2016_09_20_12_47
16-0001
16-0002
16-0003
R_2016_09_20_12_46
16-0004
16-0005
16-0006
NOTE
i take space and . as separators
i use ternary operator to make a condition on $2