Information about CGAL and alternatives - embedded

I'm working on a problem that will eventually run in an embedded microcontroller (ESP8266). I need to perform some fairly simple operations on linear equations. I don't need much, but do need to be able work with points and linear equations to:
Define an equations for lines either from two known points, or one
point and a gradient
Calculate a new x,y point on an equation line that is a specific distance from another point on that equation line
Drop a perpendicular onto an equation line from a point
Perform variations of cosine-rule calculations on points and triangle sides defined as equations
I've roughed up some code for this a while ago based on high school "y = mx + c" concepts, but it's flawed (it fails with infinities when lines are vertical), and currently in Scala. Since I suspect I'm reinventing a wheel that's not my primary goal, I'd like to use someone else's work for this!
I've come across CGAL, and it seems very likely it's capable of all this and more, but I have two questions about it (given that it seems to take ages to get enough understanding of this kind of huge library to actually be able to answer simple questions!)
It seems to assert some kind of mathematical perfection in it's calculations, but that's not important to me, and my system will be severely memory constrained. Does it use/offer memory efficient approximations?
Is it possible (and hopefully easy) to separate out just a limited subset of features, or am I going to find the entire library (or even a very large subset) heading into my memory limited machine?
And, I suppose the inevitable follow up: are there more suitable libraries I'm unaware of?
TIA!

The problems that you are mentioning sound fairly simple indeed, so I'm wondering if you really need any library at all. Maybe if you post your original code we could help you fix it--your problem sounds like you need to redo a calculation avoiding a division by zero.
As for your point (2) about separating a limited number of features from CGAL, giving the size and the coding style of that project, from my experience that will be significantly more complicated (if at all possible) than fixing your own code.
In case you want to try a simpler library than CGAL, maybe you could try Boost.Geometry
Regards,

Related

Synopsys: Repeated compiles produce different results. How to automate iterated compile?

I'm new to using Design Compiler. In the past, I've done mostly FPGA work. Right now, I'm using Synopsys to determine the minimum are necessary to represent some circuits (using the Nangate 45nm library). I'm not doing P&R right now; I'm just trying to determine transistor area.
My only optimization constraint is to minimize area. I've noticed that if I tell DC to compile more than one time in a row, it produces different (and usually smaller) results each time.
I've looked and looked and failed to see if this is mentioned in a manual or anywhere in any discussion. Is it meant to work this way?
This suggests that optimization is stopping earlier than it could, so it's not REALLY minimizing area. Any idea why?
Is there a way I can tell it to increase the effort and/or tell it to automatically iterate compiles so that it will converge on the smallest design?
I'm guessing that DC is expecting to meet timing constraints, but I've given it a purely combinatorial block and no timing constraint. Did they never consider the usage scenario when all you want to do is work out the minimum gate area for a combinatorial circuit?
On a pure combinatorial circuit you can use a set_max_delay constraint and DC will attempt to meet that.
For reduced area you can use -map_effort high or -map_effort ultra to get it to work harder.
DC is a funny beast, and the algorithms it uses change as processes advance and make certain activities more or less useful. A lot of pre-layout optimization is less useful since the whole situation can change once the gates are actually placed and routed.
I filed a support ticket with Synopsys. I was using a 2010 version of design compiler. Apparently, area optimization has been improved since then, and the 2014 version will minimize area in one compiler pass.

Software where equations are the principal objects of interest?

I'm working on a program where the main entities are mathematical equations.
Equations can only return a double or a boolean result.
The problems:
1- Lots of equations. (~300 per file)
2- There has to be a computations-log at the end, so every equation should somehow be able to log itself.
3- It has to be fast, as fast as possible, because those few hundred equations could be triggered a million times. (Think of it as a big optimization loop).
4- I want to enforce a certain order of appearance for the logged equations that is not necessarily similar that of the code.
Currently, I'm using C. (or C, with a little bit of C++), and writing every equation as a function-like macro. I'm wondering though if this is the right way to go. Has this kind of problems been tackled before? Is there some other language that's better suited to this than C? And is there any design patterns or practices that I need to be aware of for this specific class of problems?
So the equations are turning into compiled code, not interpreted?
If so, that's the fastest.
However, if your logging involves I/O, that might be the biggest time-taker, which you can determine for sure by turning it off and comparing execution time.
If so, possible ways around it are:
generating output in binary, rather than formatting numbers.
not writing any more than you have to, like events rather than long records.
trying not to be rotary-disk-bound, like writing to a memory file or a solid-state disk.

How to make a 2D Soft-body physics engine?

The definition of rigid body in Box2d is
A chunk of matter that is so strong
that the distance between any two bits
of matter on the chunk is completely
constant.
And this is exactly what i don't want as i would like to make 2D (maybe 3D eventually), elastic, deformable, breakable, and even sticky bodies.
What I'm hoping to get out of this community are resources that teach me the math behind how objects bend, break and interact. I don't care about the molecular or chemical properties of these objects, and often this is all I find when I try to search for how to calculate what a piece of wood, metal, rubber, goo, liquid, organic material, etc. might look like after a force is applied to it.
Also, I'm a very visual person, so diagrams and such are EXTREMELY HELPFUL for me.
================================================================================
Ignore these questions, they're old, and I'm only keeping them here for contextual purposes
1.Are there any simple 2D soft-body physics engines out there like this?
preferably free or opensource?
2.If not would it be possible to make my own without spending years on it?
3.Could i use existing engines like bullet and box2d as a start and simply transform their code, or would this just lead to more problems later, considering my 1 year of programming experience and bullet being 3D?
4.Finally, if i were to transform another library, would it be the best change box2D's already 2d code, Bullet's already soft code, or mixing both's source code?
Thanks!
(1) Both Bullet and PhysX have support for deformable objects in some capacity. Bullet is open source and PhysX is free to use. They both have ports for windows, mac, linux and all the major consoles.
(2) You could hack something together if you really know what you are doing, and it might even work. However, there will probably be bugs unless you have a damn good understanding of how Box2D's sequential impulse constraint solver works and what types of measures are going to be necessary to keep your system stable. That said, there are many ways to get deformable objects working with minimal fuss within a game-like environment. The first option is to take a second (or higher) order approximation of the deformation. This lets you deal with deformations in much the same way as you deal with rigid motions, only now you have a few extra degrees of freedom. See for example the following paper:
http://www.matthiasmueller.info/publications/MeshlessDeformations_SIG05.pdf
A second method is pressure soft bodies, which basically model the body as a set of particles with some distance constraints and pressure forces. This is what both PhysX and Bullet do, and it is a pretty standard technique by now (for example, Gish used it):
http://citeseerx.ist.psu.edu%2Fviewdoc%2Fdownload%3Fdoi%3D10.1.1.4.2828%26rep%3Drep1%26type%3Dpdf
If you google around, you can find lots of tutorials on implementing it, but I can't vouch for their quality. Finally, there has been a more recent push to trying to do deformable objects the `right' way using realistic elastic models and finite element type approaches. This is still an area of active research, so it is not for the faint of heart. For example, you could look at any number of the papers in this year's SIGGRAPH proceedings:
http://kesen.realtimerendering.com/sig2011.html
(3) Probably not. Though there are certain 2D style games that can work with a 3D physics engine (for example top down type games) for special effects.
(4) Based on what I just said, you should probably know the answer by now. If you are the adventurous sort and got some time to kill and the will to learn, then I say go for it! Of course it will be hard at first, but like anything it gets easier over time. Plus, learning new stuff is lots of fun!
On the other hand, if you just want results now, then don't do it. It will take a lot of time, and you will probably fail (a lot). If you just want to make games, then stick to the existing libraries and build on whatever abstractions it provides you.
Quick and partial answer:
rigid body are easy to model due to their property (you can use physic tools, like "Torseur+ (link on french on wikipedia, english equivalent points to screw theory) to modelate forces applying at any point in your element.
in comparison, non-solid elements move from almost solid (think very hard rubber : it can move but is almost solid) to almost liquid (think very soft ruber, latex). Meaning that dynamical properties applying to that knd of objects are much complex and depend of the nature of the object
Take the example of a spring : it's easy to model independantly (f=k.x), but creating a generic tool able to model that specific case is a nightmare (especially if you think of corner cases : extension is not infinite, compression reaches a lower point, material is non linear...)
as far as I know, when dealing with "elastic" materials, people do their own modelisation for their own purpose (a generic one does not exist)
now the answers:
Probably not, not that I know at least
not easily, see previously why
Unless you got high level background in elastic materials, I fear it's gonna be painful
Hope this helped
Some specific cases such as deformable balls can be simulated pretty well using spring-joint bodies:
Here is an implementation example with cocos2d: http://2sa-studio.blogspot.com/2014/05/soft-bodies-with-cocos2d-v3.html
Depending on the complexity of the deformable objects that you need, you might be able to emulate them using box2d, constraining rigid bodies with joints or springs. I did it in the past using a box2d clone for xna (farseer) and it worked nicely. Hope this helps.
The physics of your question breaks down into two different topics:
Inelastic Collisions: The math here is easy, and you could write a pretty decent library yourself without too much work for 2D points/balls. (And with more work, you could learn the physics for extended bodies.)
Materials Bending and Breaking: This will be hard. In general, you will have to model many of the topics in Mechanical Engineering:
Continuum Mechanics
Structural Analysis
Failure Analysis
Stress Analysis
Strain Analysis
I am not being glib. Modeling the bending and breaking of materials is, in general, a very detailed and varied topic. It will take a long time. And the only way to succeed will be to understand the science well enough that you can make clever shortcuts in limiting the scope of the science you need to model in your game.
However, the other half of your problem (modeling Inelastic Collisions) is a much more achievable goal.
Good luck!

Optimal optimization order

I am working on a system of optimisation problems. These tasks can be solved by a generic optimization accross all the state space. But some of my equations are independent of the remaining system( imagine a Jacobian Matrix with some blocks full of zero ) and i would like to use this fact to optimize first the joint equations and then taking the previous solution as an input finish to solve the independent components.
The rules that say the relation between the tasks can be represented as an oriented graph, but this graph contains cycle because of the joint equations, which mean that i can't use a topological sort on it.
Does anyone have an idea of how to solve this kind of pb?
Thx
There are a couple of types of frameworks you can look into (instead of inventing it yourself), which might solve your problem. The question is a bit to abstract to tell which one suits your needs, so take a look at these:
Use a solver framework to solve this optimization and look through the search space of. Take a look at Drools Planner, Gurobi, JGap, OpenTS, ...
Use a rules engine to apply the optimization changes. Take a look at Drools Expert, JESS, ...

How to test numerical analysis routines?

Are there any good online resources for how to create, maintain and think about writing test routines for numerical analysis code?
One of the limitations I can see for something like testing matrix multiplication is that the obvious tests (like having one matrix being the identity) may not fully test the functionality of the code.
Also, there is the fact that you are usually dealing with large data structures as well. Does anyone have some good ideas about ways to approach this, or have pointers to good places to look?
It sounds as if you need to think about testing in at least two different ways:
Some numerical methods allow for some meta-thinking. For example, invertible operations allow you to set up test cases to see if the result is within acceptable error bounds of the original. For example, matrix M-inverse times the matrix M * random vector V should result in V again, to within some acceptable measure of error.
Obviously, this example exercises matrix inverse, matrix multiplication and matrix-vector multiplication. I like chains like these because you can generate quite a lot of random test cases and get statistical coverage that would be a slog to have to write by hand. They don't exercise single operations in isolation, though.
Some numerical methods have a closed-form expression of their error. If you can set up a situation with a known solution, you can then compare the difference between the solution and the calculated result, looking for a difference that exceeds these known bounds.
Fundamentally, this question illustrates the problem that testing complex methods well requires quite a lot of domain knowledge. Specific references would require a little more specific information about what you're testing. I'd definitely recommend that you at least have Steve Yegge's recommended book list on hand.
If you're going to be doing matrix calculations, use LAPACK. This is very well-tested code. Very smart people have been working on it for decades. They've thought deeply about issues that the uninitiated would never think about.
In general, I'd recommend two kinds of testing: systematic and random. By systematic I mean exploring edge cases etc. It helps if you can read the source code. Often algorithms have branch points: calculate this way for numbers in this range, this other way for numbers in another range, etc. Test values close to the branch points on either side because that's where approximation error is often greatest.
Random input values are important too. If you rationally pick all the test cases, you may systematically avoid something that you don't realize is a problem. Sometimes you can make good use of random input values even if you don't have the exact values to test against. For example, if you have code to calculate a function and its inverse, you can generate 1000 random values and see whether applying the function and its inverse put you back close to where you started.
Check out a book by David Gries called The Science of Programming. It's about proving the correctness of programs. If you want to be sure that your programs are correct (to the point of proving their correctness), this book is a good place to start.
Probably not exactly what you're looking for, but it's the computer science answer to a software engineering question.