linuxbrew installed cmake on a cluster cannot find lib in /usr/lib64 - cmake

Question

I'm trying to build caffe on a GGPU cluster. I've installed a lot of dependencies in a subfolder of my home using linuxbrew. One of those dependencies is an updated version of cmake(needed).
When i launch the command
cmake ..
i get this output
-- Boost version: 1.59.0
-- Found the following Boost libraries:
-- system
-- thread
-- filesystem
-- Found gflags (include: /home/cgvg/.linuxbrew/include, library: /home/cgvg/.linuxbrew/lib/libgflags.so)
-- Found glog (include: /home/cgvg/.linuxbrew/include, library: /home/cgvg/.linuxbrew/lib/libglog.so)
-- Found PROTOBUF Compiler: /home/cgvg/.linuxbrew/bin/protoc
-- Found lmdb (include: /home/cgvg/.linuxbrew/include, library: /home/cgvg/.linuxbrew/lib/liblmdb.a)
-- Found LevelDB (include: /home/cgvg/.linuxbrew/include, library: /home/cgvg/.linuxbrew/lib/libleveldb.so)
-- Found Snappy (include: /home/cgvg/.linuxbrew/include, library: /home/cgvg/.linuxbrew/lib/libsnappy.so)
-- CUDA detected: 7.5
-- Automatic GPU detection failed. Building for all known architectures.
-- Added CUDA NVCC flags for: sm_20 sm_21 sm_30 sm_35 sm_50
-- OpenCV found (/home/cgvg/sottile/opencv/share/OpenCV)
CMake Error at /home/cgvg/.linuxbrew/Cellar/cmake/3.4.1/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:148 (message):
Could NOT find Atlas (missing: Atlas_LAPACK_LIBRARY)
Call Stack (most recent call first):
/home/cgvg/.linuxbrew/Cellar/cmake/3.4.1/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:388 (_FPHSA_FAILURE_MESSAGE)
cmake/Modules/FindAtlas.cmake:42 (find_package_handle_standard_args)
cmake/Dependencies.cmake:88 (find_package)
CMakeLists.txt:38 (include)
-- Configuring incomplete, errors occurred!
See also "/home/cgvg/sottile/caffe/build/CMakeFiles/CMakeOutput.log".
See also "/home/cgvg/sottile/caffe/build/CMakeFiles/CMakeError.log".
and it seems there is nothing i can do to link the ATLAS libs correctly.
The missing libs are under
/usr/lib64/atlas-sse3
Is it possible that there exists a limitation such that my linuxbrewed cmake cannot link to upper folders?
In the error message it says that:
cmake/Modules/FindAtlas.cmake:42
I tried to modify that file adding the correct paths:
set(Atlas_INCLUDE_SEARCH_PATHS
/usr/include
$ENV{Atlas_ROOT_DIR}
$ENV{Atlas_ROOT_DIR}/include
)
set(Atlas_LIB_SEARCH_PATHS
/usr/lib64/atlas
/usr/lib64/atlas-sse3
$ENV{Atlas_ROOT_DIR}
$ENV{Atlas_ROOT_DIR}/lib
)
and nothing happened.
i tried to change the PATH and LD_LIBRARY_PATH:
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/lib64/atlas-sse3
LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/include/atlas-x86_64-base-sse3/
and nothing happened.
I'm not a linux veteran so i apologize if i missed some important information. Any suggestion is appreciated.
EDIT:
this is the content of /usr/lib64/atlas3-sse3:
libatlas.a libcblas.so.3.0 libf77blas.so.3.0 libptcblas.so.3
libatlas.so libclapack.so liblapack.a libptcblas.so.3.0
libatlas.so.3 libclapack.so.3 liblapack.so libptf77blas.a
libatlas.so.3.0 libclapack.so.3.0 liblapack.so.3 libptf77blas.so
libcblas.a libf77blas.a liblapack.so.3.0 libptf77blas.so.3
libcblas.so libf77blas.so libptcblas.a libptf77blas.so.3.0
libcblas.so.3 libf77blas.so.3 libptcblas.so
libatlas.a libcblas.so.3.0 libf77blas.so.3.0 libptcblas.so.3
libatlas.so libclapack.so liblapack.a libptcblas.so.3.0
libatlas.so.3 libclapack.so.3 liblapack.so libptf77blas.a
libatlas.so.3.0 libclapack.so.3.0 liblapack.so.3 libptf77blas.so
libcblas.a libf77blas.a liblapack.so.3.0 libptf77blas.so.3
libcblas.so libf77blas.so libptcblas.a libptf77blas.so.3.0
libcblas.so.3 libf77blas.so.3 libptcblas.so

Answer 1

It seems that lapack is bundled in atlas, for this reason FindAtlas.cmake is not able to find alapack_r, alapck or lapack_atlas.
It is enough to edit caffe_folder/cmake/Module/FindAtlas.cmake, look for Atlas_LAPACK_LIBRARY NAMES and add clapack to the list of libs.
It completely solve the problem.