I have a file with 8 columns
1743 abc 04 10 29 31 34 35
1742 def 11 19 21 23 27 52
1741 ghi 15 18 20 32 48 49
and I also have a awk line that print the complete line that contains some specific numbers. The code is
awk -v col=1 '{ delete c; for (i=col; i<=NF; ++i) ++c[$i];
if (c['"$1"']>0 && c['"$2"']>0 && c['"$3"']>0 && c['"$4"']>0) print }'
< input_file
(the variables $1,$2,$3 and $4 is because I'm using it on bash).
In the previous example, when I put the numbers 11 21 27 and 52 I'll get the line 1742.
How can I print the next or the previous line? Like in the previous example, if I use the numbers, 11 21 27 and 52 how I take the line 1743 or the line 1741?
$ cat a.sh
echo "BEFORE"
awk -v p1="$1" -v p2="$2" -v p3="$3" -v p4="$4" -v col=1 -f before.awk file
echo "AFTER"
awk -v p1="$1" -v p2="$2" -v p3="$3" -v p4="$4" -v col=1 -f after.awk file
Quoting #triplee: "To print the previous line, remember the previous line in a variable."
$ cat before.awk
prev { delete c;
for (i=col; i<=NF; ++i) ++c[$i]
if (c[p1]>0 && c[p2]>0 && c[p3]>0 && c[p4]>0) print prev
}
{ prev = $0 }
Again, #triplee: "To print the next line, remember that you want to, and print and reset this variable on the next iteration."
$ cat after.awk
f { print; f = 0 }
{
delete c;
for (i=col; i<=NF; ++i) ++c[$i]
if (c[p1]>0 && c[p2]>0 && c[p3]>0 && c[p4]>0) f = 1
}
$ ./a.sh 11 21 27 52
BEFORE
1743 abc 04 10 29 31 34 35
AFTER
1741 ghi 15 18 20 32 48 49
a different approach with double scanning
$ awk -v search="11 21 27 52" -v offset=-1 '
NR==FNR {n=split(search,s);
for(i=1;i<=n;i++) if(FS $0 FS !~ FS s[i] FS) next;
line=NR; next}
FNR==line+offset' file{,}
1743 abc 04 10 29 31 34 35
you can set offset to any value (not just -1,0,1).
N.B. It only find one match though, if there are multiple matches only the last one will be reported. This can be handled by keeping the matched line numbers in an array instead of a scalar value (here line variable).
I'd like to sum multiple columns in a text file similar to this:
GeneA Sample 34 7 8 16
GeneA Sample 17 7 10 91
GeneA Sample 42 9 8 11
I'd like to generate the sum at the bottom of columns 3-5 so it will look like:
GeneA Sample 34 7 8 16
GeneA Sample 17 7 10 91
GeneA Sample 42 9 8 11
93 23 26
I can use this for a single column but don't know how to specify a range of columns:
awk -F'\t' '{sum+=$3} END {print sum}' input file> out
The easiest way is just repeat summing for each column, i.
awk -F '\t' '{
s3 += $3
s4 += $4
s5 += $5
}
END {
print s3, s4, s5
}' input_file > out
In awk:
$ awk '
{
for(i=3;i<=NF;i++) # loop wanted fields
s[i]+=$i } # sum to hash, index on field #
END {
for(i=3;i<=NF;i++) # same old loop
printf "%s%s",s[i],(i==NF?ORS:OFS) } # output
' file
93 23 26 118
Currently the for loop goes thru every numeric field. Change the parameters if needed.
$ awk -v OFS='\t' '{s3+=$3; s4+=$4; s5+=$5; $1=$1} 1;
END {print "","",s3,s4,s5}' file
GeneA Sample 34 7 8 16
GeneA Sample 17 7 10 91
GeneA Sample 42 9 8 11
93 23 26
Try this. Note that NF just means number of fields. And AWK indexing starts with 1. So the example here has a range of 3 to the last col.
awk '{ for(i=3;i<=NF;i++) sum[i] += $i } END { for(i=3;i<=NF;i++) printf( "%d ", sum[i] ); print "" }' input_file
If you want fewer columns, say 3 and 4, then I'd suggest:
awk '{ for(i=3;i<=4 && i<=NF;i++) sum[i] += $i } END { for(i=3;i<=4 && i<=NF;i++) printf( "%d ", sum[i] ); print "" }' input_file
I have large file with 1000 columns. I want to rearrange so that last column should be the 3rd column. FOr this i have used,
cut -f1-2,1000,3- file > out.txt
But this does not change the order.
Could anyone help using cut or awk?
Also, I want to rearrange columns 10 and 11 as shown below:
Example:
1 10 11 2 3 4 5 6 7 8 9 12 13 14 15 16 17 18 19 20
try this awk one-liner:
awk '{$3=$NF OFS $3;$NF=""}7' file
this is moving the last col to the 3rd col. if you have 1000, then it does it with 1000th col.
EDIT
if the file is tab-delimited, you could try:
awk -F'\t' -v OFS="\t" '{$3=$NF OFS $3;$NF=""}7' file
EDIT2
add an example:
kent$ seq 20|paste -s -d'\t'
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
kent$ seq 20|paste -s -d'\t'|awk -F'\t' -v OFS="\t" '{$3=$NF OFS $3;$NF=""}7'
1 2 20 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
EDIT3
You didn't give any input example. so assume you don't have empty columns in original file. (no continuous multi-tabs):
kent$ seq 20|paste -s -d'\t'|awk -F'\t' -v OFS="\t" '{$3=$10 FS $11 FS $3;$10=$11="";gsub(/\t+/,"\t")}7'
1 2 10 11 3 4 5 6 7 8 9 12 13 14 15 16 17 18 19 20
After all we could print those fields in a loop.
I THINK what you want is:
awk 'BEGIN{FS=OFS="\t"} {$3=$NF OFS $3; sub(OFS "[^" OFS "]*$","")}1' file
This might also work for you depending on your awk version:
awk 'BEGIN{FS=OFS="\t"} {$3=$NF OFS $3; NF--}1' file
Without the part after the semi-colon you'll have trailing tabs in your output.
Since many people are searching for this and even the best awk solution is not really pretty and easy to use I wanted to post my solution (mycut) written in Python:
#!/usr/bin/env python3
import sys
from signal import signal, SIGPIPE, SIG_DFL
signal(SIGPIPE,SIG_DFL)
#example usage: cat file | mycut 3 2 1
columns = [int(x) for x in sys.argv[1:]]
delimiter = "\t"
for line in sys.stdin:
parts = line.split(delimiter)
print("\t".join([parts[col] for col in columns]))
I think about adding the other features of cut like changing the delimiter and a feature to use a * to print the remaning columns. But then it will get an own page.
A shell wrapper function for awk' that uses simpler syntax:
# Usage: rearrange int_n [int_o int_p ... ] < file
rearrange ()
{
unset n;
n="{ print ";
while [ "$1" ]; do
n="$n\$$1\" \" ";
shift;
done;
n="$n }";
awk "$n" | grep '\w'
}
Examples...
echo foo bar baz | rearrange 2 3 1
bar baz foo
Using bash brace expansion, rearrange first and last 5 items in descending order:
echo {1..1000}a | tr '\n' ' ' | rearrange {1000..995} {5..1}
1000a 999a 998a 997a 996a 995a 5a 4a 3a 2a 1a
Sorted 3-letter shells in /bin:
ls -lLSr /bin/?sh | rearrange 5 9
150792 /bin/csh
154072 /bin/ash
771552 /bin/zsh
1554072 /bin/ksh
Too cumbersome:
awk '{print " "$4" "$5" "$6" "$7" "$8" "$9" "$10" "$11" "$12" "$13}' things
awk '{for(i=1;i<4;i++) $i="";print}' file
use cut
$ cut -f4-13 file
or if you insist on awk and $13 is the last field
$ awk '{$1=$2=$3="";print}' file
else
$ awk '{for(i=4;i<=13;i++)printf "%s ",$i;printf "\n"}' file
A solution that does not add extra leading or trailing whitespace:
awk '{ for(i=4; i<NF; i++) printf "%s",$i OFS; if(NF) printf "%s",$NF; printf ORS}'
### Example ###
$ echo '1 2 3 4 5 6 7' |
awk '{for(i=4;i<NF;i++)printf"%s",$i OFS;if(NF)printf"%s",$NF;printf ORS}' |
tr ' ' '-'
4-5-6-7
Sudo_O proposes an elegant improvement using the ternary operator NF?ORS:OFS
$ echo '1 2 3 4 5 6 7' |
awk '{ for(i=4; i<=NF; i++) printf "%s",$i (i==NF?ORS:OFS) }' |
tr ' ' '-'
4-5-6-7
EdMorton gives a solution preserving original whitespaces between fields:
$ echo '1 2 3 4 5 6 7' |
awk '{ sub(/([^ ]+ +){3}/,"") }1' |
tr ' ' '-'
4---5----6-7
BinaryZebra also provides two awesome solutions:
(these solutions even preserve trailing spaces from original string)
$ echo -e ' 1 2\t \t3 4 5 6 7 \t 8\t ' |
awk -v n=3 '{ for ( i=1; i<=n; i++) { sub("^["FS"]*[^"FS"]+["FS"]+","",$0);} } 1 ' |
sed 's/ /./g;s/\t/->/g;s/^/"/;s/$/"/'
"4...5...6.7.->.8->."
$ echo -e ' 1 2\t \t3 4 5 6 7 \t 8\t ' |
awk -v n=3 '{ print gensub("["FS"]*([^"FS"]+["FS"]+){"n"}","",1); }' |
sed 's/ /./g;s/\t/->/g;s/^/"/;s/$/"/'
"4...5...6.7.->.8->."
The solution given by larsr in the comments is almost correct:
$ echo '1 2 3 4 5 6 7' |
awk '{for (i=3;i<=NF;i++) $(i-2)=$i; NF=NF-2; print $0}' | tr ' ' '-'
3-4-5-6-7
This is the fixed and parametrized version of larsr solution:
$ echo '1 2 3 4 5 6 7' |
awk '{for(i=n;i<=NF;i++)$(i-(n-1))=$i;NF=NF-(n-1);print $0}' n=4 | tr ' ' '-'
4-5-6-7
All other answers before Sep-2013 are nice but add extra spaces:
Example of answer adding extra leading spaces:
$ echo '1 2 3 4 5 6 7' |
awk '{$1=$2=$3=""}1' |
tr ' ' '-'
---4-5-6-7
Example of answer adding extra trailing space
$ echo '1 2 3 4 5 6 7' |
awk '{for(i=4;i<=13;i++)printf "%s ",$i;printf "\n"}' |
tr ' ' '-'
4-5-6-7-------
Try this:
awk '{ $1=""; $2=""; $3=""; print $0 }'
The correct way to do this is with an RE interval because it lets you simply state how many fields to skip, and retains inter-field spacing for the remaining fields.
e.g. to skip the first 3 fields without affecting spacing between remaining fields given the format of input we seem to be discussing in this question is simply:
$ echo '1 2 3 4 5 6' |
awk '{sub(/([^ ]+ +){3}/,"")}1'
4 5 6
If you want to accommodate leading spaces and non-blank spaces, but again with the default FS, then it's:
$ echo ' 1 2 3 4 5 6' |
awk '{sub(/[[:space:]]*([^[:space:]]+[[:space:]]+){3}/,"")}1'
4 5 6
If you have an FS that's an RE you can't negate in a character set, you can convert it to a single char first (RS is ideal if it's a single char since an RS CANNOT appear within a field, otherwise consider SUBSEP), then apply the RE interval subsitution, then convert to the OFS. e.g. if chains of "."s separated the fields:
$ echo '1...2.3.4...5....6' |
awk -F'[.]+' '{gsub(FS,RS);sub("([^"RS"]+["RS"]+){3}","");gsub(RS,OFS)}1'
4 5 6
Obviously if OFS is a single char AND it can't appear in the input fields you can reduce that to:
$ echo '1...2.3.4...5....6' |
awk -F'[.]+' '{gsub(FS,OFS); sub("([^"OFS"]+["OFS"]+){3}","")}1'
4 5 6
Then you have the same issue as with all the loop-based solutions that reassign the fields - the FSs are converted to OFSs. If that's an issue, you need to look into GNU awks' patsplit() function.
Pretty much all the answers currently add either leading spaces, trailing spaces or some other separator issue. To select from the fourth field where the separator is whitespace and the output separator is a single space using awk would be:
awk '{for(i=4;i<=NF;i++)printf "%s",$i (i==NF?ORS:OFS)}' file
To parametrize the starting field you could do:
awk '{for(i=n;i<=NF;i++)printf "%s",$i (i==NF?ORS:OFS)}' n=4 file
And also the ending field:
awk '{for(i=n;i<=m=(m>NF?NF:m);i++)printf "%s",$i (i==m?ORS:OFS)}' n=4 m=10 file
awk '{$1=$2=$3="";$0=$0;$1=$1}1'
Input
1 2 3 4 5 6 7
Output
4 5 6 7
echo 1 2 3 4 5| awk '{ for (i=3; i<=NF; i++) print $i }'
Another way to avoid using the print statement:
$ awk '{$1=$2=$3=""}sub("^"FS"*","")' file
In awk when a condition is true print is the default action.
I can't believe nobody offered plain shell:
while read -r a b c d; do echo "$d"; done < file
Options 1 to 3 have issues with multiple whitespace (but are simple).
That is the reason to develop options 4 and 5, which process multiple white spaces with no problem.
Of course, if options 4 or 5 are used with n=0 both will preserve any leading whitespace as n=0 means no splitting.
Option 1
A simple cut solution (works with single delimiters):
$ echo '1 2 3 4 5 6 7 8' | cut -d' ' -f4-
4 5 6 7 8
Option 2
Forcing an awk re-calc sometimes solve the problem (works with some versions of awk) of added leading spaces:
$ echo '1 2 3 4 5 6 7 8' | awk '{ $1=$2=$3="";$0=$0;} NF=NF'
4 5 6 7 8
Option 3
Printing each field formated with printf will give more control:
$ echo ' 1 2 3 4 5 6 7 8 ' |
awk -v n=3 '{ for (i=n+1; i<=NF; i++){printf("%s%s",$i,i==NF?RS:OFS);} }'
4 5 6 7 8
However, all previous answers change all FS between fields to OFS. Let's build a couple of solutions to that.
Option 4
A loop with sub to remove fields and delimiters is more portable, and doesn't trigger a change of FS to OFS:
$ echo ' 1 2 3 4 5 6 7 8 ' |
awk -v n=3 '{ for(i=1;i<=n;i++) { sub("^["FS"]*[^"FS"]+["FS"]+","",$0);} } 1 '
4 5 6 7 8
NOTE: The "^["FS"]*" is to accept an input with leading spaces.
Option 5
It is quite possible to build a solution that does not add extra leading or trailing whitespace, and preserve existing whitespace using the function gensub from GNU awk, as this:
$ echo ' 1 2 3 4 5 6 7 8 ' |
awk -v n=3 '{ print gensub("["FS"]*([^"FS"]+["FS"]+){"n"}","",1); }'
4 5 6 7 8
It also may be used to swap a field list given a count n:
$ echo ' 1 2 3 4 5 6 7 8 ' |
awk -v n=3 '{ a=gensub("["FS"]*([^"FS"]+["FS"]+){"n"}","",1);
b=gensub("^(.*)("a")","\\1",1);
print "|"a"|","!"b"!";
}'
|4 5 6 7 8 | ! 1 2 3 !
Of course, in such case, the OFS is used to separate both parts of the line, and the trailing white space of the fields is still printed.
Note1: ["FS"]* is used to allow leading spaces in the input line.
Cut has a --complement flag that makes it easy (and fast) to delete columns. The resulting syntax is analogous with what you want to do -- making the solution easier to read/understand. Complement also works for the case where you would like to delete non-contiguous columns.
$ foo='1 2 3 %s 5 6 7'
$ echo "$foo" | cut --complement -d' ' -f1-3
%s 5 6 7
$
Perl solution which does not add leading or trailing whitespace:
perl -lane 'splice #F,0,3; print join " ",#F' file
The perl #F autosplit array starts at index 0 while awk fields start with $1
Perl solution for comma-delimited data:
perl -F, -lane 'splice #F,0,3; print join ",",#F' file
Python solution:
python -c "import sys;[sys.stdout.write(' '.join(line.split()[3:]) + '\n') for line in sys.stdin]" < file
For me the most compact and compliant solution to the request is
$ a='1 2\t \t3 4 5 6 7 \t 8\t ';
$ echo -e "$a" | awk -v n=3 '{while (i<n) {i++; sub($1 FS"*", "")}; print $0}'
And if you have more lines to process as for instance file foo.txt, don't forget to reset i to 0:
$ awk -v n=3 '{i=0; while (i<n) {i++; sub($1 FS"*", "")}; print $0}' foo.txt
Thanks your forum.
As I was annoyed by the first highly upvoted but wrong answer I found enough to write a reply there, and here the wrong answers are marked as such, here is my bit. I do not like proposed solutions as I can see no reason to make answer so complex.
I have a log where after $5 with an IP address can be more text or no text. I need everything from the IP address to the end of the line should there be anything after $5. In my case, this is actualy withn an awk program, not an awk oneliner so awk must solve the problem. When I try to remove the first 4 fields using the old nice looking and most upvoted but completely wrong answer:
echo " 7 27.10.16. Thu 11:57:18 37.244.182.218 one two three" | awk '{$1=$2=$3=$4=""; printf "[%s]\n", $0}'
it spits out wrong and useless response (I added [] to demonstrate):
[ 37.244.182.218 one two three]
Instead, if columns are fixed width until the cut point and awk is needed, the correct and quite simple answer is:
echo " 7 27.10.16. Thu 11:57:18 37.244.182.218 one two three" | awk '{printf "[%s]\n", substr($0,28)}'
which produces the desired output:
[37.244.182.218 one two three]
I've found this other possibility, maybe it could be useful also...
awk 'BEGIN {OFS=ORS="\t" }; {for(i=1; i<14; i++) print $i " "; print $NF "\n" }' your_file
Note: 1. For tabular data and from column $1 to $14
Use cut:
cut -d <The character between characters> -f <number of first column>,<number of last column> <file name>
e.g.: If you have file1 containing : car.is.nice.equal.bmw
Run : cut -d . -f1,3 file1 will print car.is.nice
This isn't very far from some of the previous answers, but does solve a couple of issues:
cols.sh:
#!/bin/bash
awk -v s=$1 '{for(i=s; i<=NF;i++) printf "%-5s", $i; print "" }'
Which you can now call with an argument that will be the starting column:
$ echo "1 2 3 4 5 6 7 8 9 10 11 12 13 14" | ./cols.sh 3
3 4 5 6 7 8 9 10 11 12 13 14
Or:
$ echo "1 2 3 4 5 6 7 8 9 10 11 12 13 14" | ./cols.sh 7
7 8 9 10 11 12 13 14
This is 1-indexed; if you prefer zero indexed, use i=s + 1 instead.
Moreover, if you would like to have to arguments for the starting index and end index, change the file to:
#!/bin/bash
awk -v s=$1 -v e=$2 '{for(i=s; i<=e;i++) printf "%-5s", $i; print "" }'
For example:
$ echo "1 2 3 4 5 6 7 8 9 10 11 12 13 14" | ./cols.sh 7 9
7 8 9
The %-5s aligns the result as 5-character-wide columns; if this isn't enough, increase the number, or use %s (with a space) instead if you don't care about alignment.
AWK printf-based solution that avoids % problem, and is unique in that it returns nothing (no return character) if there are less than 4 columns to print:
awk 'NF > 3 { for(i=4; i<NF; i++) printf("%s ", $(i)); print $(i) }'
Testing:
$ x='1 2 3 %s 4 5 6'
$ echo "$x" | awk 'NF > 3 { for(i=4; i<NF; i++) printf("%s ", $(i)); print $(i) }'
%s 4 5 6
$ x='1 2 3'
$ echo "$x" | awk 'NF > 3 { for(i=4; i<NF; i++) printf("%s ", $(i)); print $(i) }'
$ x='1 2 3 '
$ echo "$x" | awk 'NF > 3 { for(i=4; i<NF; i++) printf("%s ", $(i)); print $(i) }'
$